Java tutorial
// Question Generation via Overgenerating Transformations and Ranking // Copyright (c) 2010 Carnegie Mellon University. All Rights Reserved. // // This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. // // For more information, bug reports, fixes, contact: // Michael Heilman // Carnegie Mellon University // mheilman@cmu.edu // http://www.cs.cmu.edu/~mheilman package MedArkRef; import arkref.parsestuff.TregexPatternFactory; import edu.stanford.nlp.ling.HasWord; import edu.stanford.nlp.ling.Label; import edu.stanford.nlp.parser.lexparser.LexicalizedParser; import edu.stanford.nlp.parser.lexparser.Options; import edu.stanford.nlp.process.DocumentPreprocessor; import edu.stanford.nlp.trees.*; import edu.stanford.nlp.trees.tregex.TregexMatcher; import edu.stanford.nlp.trees.tregex.TregexPattern; import edu.stanford.nlp.trees.tregex.tsurgeon.Tsurgeon; import edu.stanford.nlp.trees.tregex.tsurgeon.TsurgeonPattern; import edu.stanford.nlp.util.Pair; import net.didion.jwnl.data.IndexWord; import net.didion.jwnl.data.POS; import net.didion.jwnl.dictionary.Dictionary; import org.apache.commons.lang.StringUtils; import java.io.*; import java.net.Socket; import java.util.ArrayList; import java.util.List; public class AnalysisUtilities { private AnalysisUtilities() { parser = null; conjugator = new VerbConjugator(); conjugator.load(GlobalProperties.getProperties().getProperty("verbConjugationsFile", "config" + File.separator + "verbConjugations.txt")); headfinder = new CollinsHeadFinder(); tree_factory = new LabeledScoredTreeFactory(); tlp = new PennTreebankLanguagePack(); } public static void addPeriodIfNeeded(Tree input) { String tregexOpStr = "ROOT < (S=mainclause !< /\\./)"; TregexPattern matchPattern = TregexPatternFactory.getPattern(tregexOpStr); TregexMatcher matcher = matchPattern.matcher(input); if (matcher.find()) { TsurgeonPattern p; List<TsurgeonPattern> ps = new ArrayList<TsurgeonPattern>(); List<Pair<TregexPattern, TsurgeonPattern>> ops = new ArrayList<Pair<TregexPattern, TsurgeonPattern>>(); ps.add(Tsurgeon.parseOperation("insert (. .) >-1 mainclause")); p = Tsurgeon.collectOperations(ps); ops.add(new Pair<TregexPattern, TsurgeonPattern>(matchPattern, p)); Tsurgeon.processPatternsOnTree(ops, input); } } public static int getNumberOfMatchesInTree(String tregexExpression, Tree t) { int res = 0; TregexMatcher m = TregexPatternFactory.getPattern(tregexExpression).matcher(t); while (m.find()) { res++; } return res; } public static List<String> getSentences(String document) { DocumentPreprocessor dp = new DocumentPreprocessor(false); List<String> res = new ArrayList<String>(); String sentence; document = preprocess(document); String[] paragraphs = document.split("\\n"); for (int i = 0; i < paragraphs.length; i++) { StringReader reader = new StringReader(paragraphs[i]); List<List<? extends HasWord>> sents = new ArrayList<List<? extends HasWord>>(); try { sents = dp.getSentencesFromText(reader); } catch (Exception e) { e.printStackTrace(); } for (List<? extends HasWord> tmp1 : sents) { sentence = ""; for (HasWord tmp2 : tmp1) { String tmp = tmp2.word().toString(); sentence += tmp + " "; } sentence = sentence.trim(); res.add(sentence); } } return res; } public static String abbrevTree(Tree tree) { ArrayList<String> toks = new ArrayList<String>(); for (Tree L : tree.getLeaves()) { toks.add(L.label().toString()); } return tree.label().toString() + "[" + StringUtils.join(toks, " ") + "]"; } public static void downcaseFirstToken(Tree inputTree) { if (inputTree == null) { return; } Tree firstWordTree = inputTree.getLeaves().get(0); if (firstWordTree == null) return; Tree preterm = firstWordTree.parent(inputTree); String firstWord = firstWordTree.yield().toString(); if (firstWord != null && preterm != null && preterm.label() != null && !preterm.label().toString().matches("^NNP.*") && !firstWord.equals("I")) { //if(firstWord.indexOf('-') == -1 && !firstWord.equals("I")){ firstWord = firstWord.substring(0, 1).toLowerCase() + firstWord.substring(1); firstWordTree.label().setValue(firstWord); } //if(QuestionTransducer.DEBUG) System.err.println("downcaseFirstToken: "+inputTree.toString()); } public static void upcaseFirstToken(Tree inputTree) { Tree firstWordTree = inputTree.getLeaves().get(0); if (firstWordTree == null) return; String firstWord = firstWordTree.yield().toString(); firstWord = firstWord.substring(0, 1).toUpperCase() + firstWord.substring(1); firstWordTree.label().setValue(firstWord); //if(QuestionTransducer.DEBUG) System.err.println("upcaseFirstToken: "+inputTree.toString()); } public static String preprocess(String sentence) { //remove trailing whitespace sentence = sentence.trim(); //remove single words in parentheses. //the stanford parser api messed up on these //by removing the parentheses but not the word in them sentence = sentence.replaceAll("\\(\\S*\\)", ""); sentence = sentence.replaceAll("\\(\\s*\\)", ""); //some common unicode characters that the tokenizer throws out otherwise sentence = sentence.replaceAll("", "--"); sentence = sentence.replaceAll("", "'"); sentence = sentence.replaceAll("?", "\""); sentence = sentence.replaceAll("", "\""); sentence = sentence.replaceAll("|||", "e"); sentence = sentence.replaceAll("|||", "E"); sentence = sentence.replaceAll("|||", "i"); sentence = sentence.replaceAll("|?||?", "I"); sentence = sentence.replaceAll("||||||", "a"); sentence = sentence.replaceAll("|?|||||", "A"); sentence = sentence.replaceAll("||||", "o"); sentence = sentence.replaceAll("||||", "O"); sentence = sentence.replaceAll("|||", "u"); sentence = sentence.replaceAll("|||", "U"); sentence = sentence.replaceAll("", "n"); //contractions sentence = sentence.replaceAll("can't", "can not"); sentence = sentence.replaceAll("won't", "will not"); sentence = sentence.replaceAll("n't", " not"); //aren't shouldn't don't isn't sentence = sentence.replaceAll("are n't", "are not"); //simply remove other unicode characters //if not, the tokenizer replaces them with spaces, //which wreaks havoc on the final parse sometimes for (int i = 0; i < sentence.length(); i++) { if (sentence.charAt(i) > 'z') { sentence = sentence.substring(0, i) + sentence.substring(i + 1); } } //add punctuation to the end if necessary /*Matcher matcher = Pattern.compile(".*\\.['\"\n ]*$", Pattern.DOTALL).matcher(sentence); if(!matcher.matches()){ sentence += "."; }*/ return sentence; } public static String preprocessTreeString(String sentence) { sentence = sentence.replaceAll(" n't", " not"); sentence = sentence.replaceAll("\\(MD ca\\)", "(MD can)"); sentence = sentence.replaceAll("\\(MD wo\\)", "(MD will)"); sentence = sentence.replaceAll("\\(MD 'd\\)", "(MD would)"); sentence = sentence.replaceAll("\\(VBD 'd\\)", "(VBD had)"); sentence = sentence.replaceAll("\\(VBZ 's\\)", "(VBZ is)"); sentence = sentence.replaceAll("\\(VBZ 's\\)", "(VBZ is)"); sentence = sentence.replaceAll("\\(VBZ 's\\)", "(VBZ is)"); sentence = sentence.replaceAll("\\(VBP 're\\)", "(VBP are)"); return sentence; } public VerbConjugator getConjugator() { return conjugator; } public CollinsHeadFinder getHeadFinder() { return headfinder; } public static AnalysisUtilities getInstance() { if (instance == null) { instance = new AnalysisUtilities(); } return instance; } public arkref.parsestuff.AnalysisUtilities.ParseResult parseSentence(String sentence) { String result = ""; //System.err.println(sentence); //see if a parser socket server is available int port = new Integer(GlobalProperties.getProperties().getProperty("parserServerPort", "5556")); String host = "127.0.0.1"; Socket client; PrintWriter pw; BufferedReader br; String line; Tree parse = null; double parseScore = Double.MIN_VALUE; try { client = new Socket(host, port); pw = new PrintWriter(client.getOutputStream()); br = new BufferedReader(new InputStreamReader(client.getInputStream())); pw.println(sentence); pw.flush(); //flush to complete the transmission while ((line = br.readLine()) != null) { //if(!line.matches(".*\\S.*")){ // System.out.println(); //} if (br.ready()) { line = line.replaceAll("\n", ""); line = line.replaceAll("\\s+", " "); result += line + " "; } else { parseScore = new Double(line); } } br.close(); pw.close(); client.close(); if (parse == null) { parse = readTreeFromString("(ROOT (. .))"); parseScore = -99999.0; } if (GlobalProperties.getDebug()) System.err.println("result (parse):" + result); parse = readTreeFromString(result); return new arkref.parsestuff.AnalysisUtilities.ParseResult(true, parse, parseScore); } catch (Exception ex) { if (GlobalProperties.getDebug()) System.err.println("Could not connect to parser server."); //ex.printStackTrace(); } System.err.println("parsing:" + sentence); //if socket server not available, then use a local parser object if (parser == null) { try { Options op = new Options(); String serializedInputFileOrUrl = GlobalProperties.getProperties().getProperty("parserGrammarFile", "config" + File.separator + "englishFactored.ser.gz"); parser = new LexicalizedParser(serializedInputFileOrUrl, op); int maxLength = new Integer(GlobalProperties.getProperties().getProperty("parserMaxLength", "40")) .intValue(); parser.setMaxLength(maxLength); parser.setOptionFlags("-outputFormat", "oneline"); } catch (Exception e) { e.printStackTrace(); } } try { if (parser.parse(sentence)) { parse = parser.getBestParse(); //remove all the parent annotations (this is a hacky way to do it) String ps = parse.toString().replaceAll("\\[[^\\]]+/[^\\]]+\\]", ""); parse = AnalysisUtilities.getInstance().readTreeFromString(ps); parseScore = parser.getPCFGScore(); return new arkref.parsestuff.AnalysisUtilities.ParseResult(true, parse, parseScore); } } catch (Exception e) { } parse = readTreeFromString("(ROOT (. .))"); parseScore = -99999.0; return new arkref.parsestuff.AnalysisUtilities.ParseResult(false, parse, parseScore); } public String getLemma(String word, String pos) { if (!(pos.startsWith("N") || pos.startsWith("V") || pos.startsWith("J") || pos.startsWith("R")) || pos.startsWith("NNP")) { return word.toLowerCase(); } String res = word.toLowerCase(); if (res.equals("is") || res.equals("are") || res.equals("were") || res.equals("was")) { res = "be"; } else { try { IndexWord iw; if (pos.startsWith("V")) iw = Dictionary.getInstance().getMorphologicalProcessor().lookupBaseForm(POS.VERB, res); else if (pos.startsWith("N")) iw = Dictionary.getInstance().getMorphologicalProcessor().lookupBaseForm(POS.NOUN, res); else if (pos.startsWith("J")) iw = Dictionary.getInstance().getMorphologicalProcessor().lookupBaseForm(POS.ADJECTIVE, res); else iw = Dictionary.getInstance().getMorphologicalProcessor().lookupBaseForm(POS.ADVERB, res); if (iw == null) return res; res = iw.getLemma(); } catch (Exception e) { e.printStackTrace(); } } return res; } /** * Remove traces and non-terminal decorations (e.g., "-SUBJ" in "NP-SUBJ") from a Penn Treebank-style tree. * * @param inputTree */ public void normalizeTree(Tree inputTree) { inputTree.label().setFromString("ROOT"); List<Pair<TregexPattern, TsurgeonPattern>> ops = new ArrayList<Pair<TregexPattern, TsurgeonPattern>>(); List<TsurgeonPattern> ps = new ArrayList<TsurgeonPattern>(); String tregexOpStr; TregexPattern matchPattern; TsurgeonPattern p; TregexMatcher matcher; tregexOpStr = "/\\-NONE\\-/=emptynode"; matchPattern = TregexPatternFactory.getPattern(tregexOpStr); matcher = matchPattern.matcher(inputTree); ps.add(Tsurgeon.parseOperation("prune emptynode")); matchPattern = TregexPatternFactory.getPattern(tregexOpStr); p = Tsurgeon.collectOperations(ps); ops.add(new Pair<TregexPattern, TsurgeonPattern>(matchPattern, p)); Tsurgeon.processPatternsOnTree(ops, inputTree); Label nonterminalLabel; tregexOpStr = "/.+\\-.+/=nonterminal < __"; matchPattern = TregexPatternFactory.getPattern(tregexOpStr); matcher = matchPattern.matcher(inputTree); while (matcher.find()) { nonterminalLabel = matcher.getNode("nonterminal"); if (nonterminalLabel == null) continue; nonterminalLabel.setFromString(tlp.basicCategory(nonterminalLabel.value())); } } /** * remove extra quotation marks * (a hack due to annoying PTB conventions by which quote marks aren't in the same consituent) * * @param input */ public static void removeExtraQuotes(Tree input) { List<Pair<TregexPattern, TsurgeonPattern>> ops = new ArrayList<Pair<TregexPattern, TsurgeonPattern>>(); String tregexOpStr; TregexPattern matchPattern; TsurgeonPattern p; List<TsurgeonPattern> ps; ps = new ArrayList<TsurgeonPattern>(); tregexOpStr = "ROOT [ << (``=quote < `` !.. ('' < '')) | << (''=quote < '' !,, (`` < ``)) ] "; matchPattern = TregexPatternFactory.getPattern(tregexOpStr); ps.add(Tsurgeon.parseOperation("prune quote")); p = Tsurgeon.collectOperations(ps); ops.add(new Pair<TregexPattern, TsurgeonPattern>(matchPattern, p)); Tsurgeon.processPatternsOnTree(ops, input); } public static String getCleanedUpYield(Tree inputTree) { Tree copyTree = inputTree.deeperCopy(); //if(GlobalProperties.getDebug()) System.err.println("yield:"+copyTree.toString()); return cleanUpSentenceString(copyTree.yield().toString()); } public static String cleanUpSentenceString(String s) { String res = s; //if(res.length() > 1){ // res = res.substring(0,1).toUpperCase() + res.substring(1); //} res = res.replaceAll("\\s([\\.,!\\?\\-;:])", "$1"); res = res.replaceAll("(\\$)\\s", "$1"); res = res.replaceAll("can not", "cannot"); res = res.replaceAll("\\s*-LRB-\\s*", " ("); res = res.replaceAll("\\s*-RRB-\\s*", ") "); res = res.replaceAll("\\s*([\\.,?!])\\s*", "$1 "); res = res.replaceAll("\\s+''", "''"); //res = res.replaceAll("\"", ""); res = res.replaceAll("``\\s+", "``"); res = res.replaceAll("\\-[LR]CB\\-", ""); //brackets, e.g., [sic] res = res.replaceAll("\\. \\?", ".?"); res = res.replaceAll(" 's(\\W)", "'s$1"); res = res.replaceAll("(\\d,) (\\d)", "$1$2"); //e.g., "5, 000, 000" -> "5,000,000" res = res.replaceAll("``''", ""); //remove extra spaces res = res.replaceAll("\\s\\s+", " "); res = res.trim(); return res; } public static boolean cCommands(Tree root, Tree n1, Tree n2) { if (n1.dominates(n2)) return false; Tree n1Parent = n1.parent(root); while (n1Parent != null && n1Parent.numChildren() == 1) { n1Parent = n1Parent.parent(root); } if (n1Parent != null && n1Parent.dominates(n2)) return true; return false; } public Tree readTreeFromString(String parseStr) { //read in the input into a Tree data structure TreeReader treeReader = new PennTreeReader(new StringReader(parseStr), tree_factory); Tree inputTree = null; try { inputTree = treeReader.readTree(); } catch (IOException e) { e.printStackTrace(); } return inputTree; } public static boolean filterOutSentenceByPunctuation(String sentence) { //return (sentence.indexOf("\"") != -1 //|| sentence.indexOf("''") != -1 //|| sentence.indexOf("``") != -1 //|| sentence.indexOf("*") != -1); if (sentence.indexOf("*") != -1) { return true; } //if(sentence.matches("[^\\w\\-\\/\\?\\.,;:\\$\\#\\&\\(\\) ]")){ // return true; //} return false; } public String getSurfaceForm(String lemma, String pos) { return conjugator.getSurfaceForm(lemma, pos); } private LexicalizedParser parser; private static AnalysisUtilities instance; private VerbConjugator conjugator; private CollinsHeadFinder headfinder; private LabeledScoredTreeFactory tree_factory; private PennTreebankLanguagePack tlp; }