jp.massbank.spectrumsearch.entity.file.MassBankRecord.java Source code

Introduction

Here is the source code for jp.massbank.spectrumsearch.entity.file.MassBankRecord.java

Source

package jp.massbank.spectrumsearch.entity.file;

import java.util.ArrayList;
import java.util.HashMap;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;

import org.apache.commons.lang3.StringUtils;

public class MassBankRecord {

    // Record Specific Information
    private String id;
    private String title;
    private String date;
    private List<String> authors;
    private String license;
    private List<String> copyrights;
    private List<String> publications;
    private List<String> comments;
    // Information of Chemical Compound Analyzed
    private List<String> chNames;
    private String chCompoundClass;
    private String chFormula;
    private Float chExtractMass;
    private String chSmiles;
    private String chIupac;
    private Map<String, String> chLinkMap;
    // Information of Biological Sample
    private String spScientificName;
    private String spName;
    private String spLineage;
    private Map<String, String> spLinkMap;
    private String spSample;
    // Analytical Methods and Conditions
    private AcInstrument acInstrument;
    private Map<String, String> acMassSpectrometryMap;
    private Map<String, String> acChromatographyMap;
    // Description of mass spectral data
    private Map<String, String> msFocusedIonMap;
    private Map<String, String> msDataProcessingMap;
    // Peak Information
    private List<Map<String, String>> pkAnnotationMap;
    private PkPeak pkPeak;

    public boolean isAvailable() {
        return StringUtils.isNotBlank(id);
    }

    public String getId() {
        return id;
    }

    public void setId(String id) {
        this.id = id;
    }

    public String getTitle() {
        return title;
    }

    public void setTitle(String title) {
        this.title = title;
    }

    public String getDate() {
        return date;
    }

    public void setDate(String date) {
        this.date = date;
    }

    public List<String> getAuthors() {
        if (authors == null) {
            authors = new ArrayList<String>();
        }
        return authors;
    }

    public void setAuthors(List<String> authors) {
        this.authors = authors;
    }

    public String getLicense() {
        return license;
    }

    public void setLicense(String license) {
        this.license = license;
    }

    public List<String> getCopyrights() {
        if (copyrights == null) {
            copyrights = new ArrayList<String>();
        }
        return copyrights;
    }

    public void setCopyrights(List<String> copyrights) {
        this.copyrights = copyrights;
    }

    public List<String> getPublications() {
        if (publications == null) {
            publications = new ArrayList<String>();
        }
        return publications;
    }

    public void setPublications(List<String> publications) {
        this.publications = publications;
    }

    public List<String> getComments() {
        if (comments == null) {
            comments = new ArrayList<String>();
        }
        return comments;
    }

    public void setComments(List<String> comments) {
        this.comments = comments;
    }

    public List<String> getChNames() {
        if (chNames == null) {
            chNames = new ArrayList<String>();
        }
        return chNames;
    }

    public void setChNames(List<String> ChemicalNames) {
        this.chNames = ChemicalNames;
    }

    public String getChCompoundClass() {
        return chCompoundClass;
    }

    public void setChCompoundClass(String chemicalCompoundClass) {
        this.chCompoundClass = chemicalCompoundClass;
    }

    public String getChFormula() {
        return chFormula;
    }

    public void setChFormula(String formula) {
        this.chFormula = formula;
    }

    public Float getChExtractMass() {
        return chExtractMass;
    }

    public void setChExtractMass(Float extractMass) {
        this.chExtractMass = extractMass;
    }

    public String getChSmiles() {
        return chSmiles;
    }

    public void setChSmiles(String smiles) {
        this.chSmiles = smiles;
    }

    public String getChIupac() {
        return chIupac;
    }

    public void setChIupac(String iupac) {
        this.chIupac = iupac;
    }

    public Map<String, String> getChLinkMap() {
        if (chLinkMap == null) {
            chLinkMap = new LinkedHashMap<String, String>();
        }
        return chLinkMap;
    }

    public void setChLinkMap(Map<String, String> linkMap) {
        this.chLinkMap = linkMap;
    }

    public String getSpScientificName() {
        return spScientificName;
    }

    public void setSpScientificName(String spScientificName) {
        this.spScientificName = spScientificName;
    }

    public String getSpName() {
        return spName;
    }

    public void setSpName(String spName) {
        this.spName = spName;
    }

    public String getSpLineage() {
        return spLineage;
    }

    public void setSpLineage(String spLineage) {
        this.spLineage = spLineage;
    }

    public Map<String, String> getSpLinkMap() {
        if (spLinkMap == null) {
            spLinkMap = new HashMap<String, String>();
        }
        return spLinkMap;
    }

    public void setSpLinkMap(Map<String, String> spLinkMap) {
        this.spLinkMap = spLinkMap;
    }

    public String getSpSample() {
        return spSample;
    }

    public void setSpSample(String spSample) {
        this.spSample = spSample;
    }

    public AcInstrument getAcInstrument() {
        if (acInstrument == null) {
            acInstrument = new AcInstrument();
        }
        return acInstrument;
    }

    public void setAcInstrument(AcInstrument instrument) {
        this.acInstrument = instrument;
    }

    public Map<String, String> getAcMassSpectrometryMap() {
        if (acMassSpectrometryMap == null) {
            acMassSpectrometryMap = new LinkedHashMap<String, String>();
        }
        return acMassSpectrometryMap;
    }

    public void setAcMassSpectrometryMap(Map<String, String> massSpectrometryMap) {
        this.acMassSpectrometryMap = massSpectrometryMap;
    }

    public Map<String, String> getAcChromatographyMap() {
        if (acChromatographyMap == null) {
            acChromatographyMap = new LinkedHashMap<String, String>();
        }
        return acChromatographyMap;
    }

    public void setAcChromatographyMap(Map<String, String> chromatographyMap) {
        this.acChromatographyMap = chromatographyMap;
    }

    public Map<String, String> getMsFocusedIonMap() {
        if (msFocusedIonMap == null) {
            msFocusedIonMap = new LinkedHashMap<String, String>();
        }
        return msFocusedIonMap;
    }

    public void setMsFocusedIonMap(Map<String, String> focusedIonMap) {
        this.msFocusedIonMap = focusedIonMap;
    }

    public Map<String, String> getMsDataProcessingMap() {
        if (msDataProcessingMap == null) {
            msDataProcessingMap = new LinkedHashMap<String, String>();
        }
        return msDataProcessingMap;
    }

    public void setMsDataProcessingMap(Map<String, String> dataProcessingMap) {
        this.msDataProcessingMap = dataProcessingMap;
    }

    public List<Map<String, String>> getPkAnnotationMap() {
        if (pkAnnotationMap == null) {
            pkAnnotationMap = new ArrayList<Map<String, String>>();
        }
        return pkAnnotationMap;
    }

    public void setPkAnnotationMap(List<Map<String, String>> annotationMap) {
        this.pkAnnotationMap = annotationMap;
    }

    public PkPeak getPkPeak() {
        if (pkPeak == null) {
            pkPeak = new PkPeak();
        }
        return pkPeak;
    }

    public void setPkPeak(PkPeak peak) {
        this.pkPeak = peak;
    }

}