ispyb.server.mx.services.autoproc.PhasingStatistics3ServiceBean.java Source code

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Here is the source code for ispyb.server.mx.services.autoproc.PhasingStatistics3ServiceBean.java

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/*************************************************************************************************
 * This file is part of ISPyB.
 * 
 * ISPyB is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 * 
 * ISPyB is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License for more details.
 * 
 * You should have received a copy of the GNU Lesser General Public License
 * along with ISPyB.  If not, see <http://www.gnu.org/licenses/>.
 * 
 * Contributors : S. Delageniere, R. Leal, L. Launer, K. Levik, S. Veyrier, P. Brenchereau, M. Bodin, A. De Maria Antolinos
 ****************************************************************************************************/
package ispyb.server.mx.services.autoproc;

import java.util.List;

import javax.ejb.Stateless;
import javax.persistence.EntityManager;
import javax.persistence.NoResultException;
import javax.persistence.PersistenceContext;

import org.apache.log4j.Logger;
import org.hibernate.Criteria;
import org.hibernate.Session;
import org.hibernate.criterion.Order;
import org.hibernate.criterion.Restrictions;

import ispyb.server.common.exceptions.AccessDeniedException;

import ispyb.server.mx.vos.autoproc.PhasingStatistics3VO;

/**
 * <p>
 *  This session bean handles ISPyB PhasingStatistics3.
 * </p>
 */
@Stateless
public class PhasingStatistics3ServiceBean implements PhasingStatistics3Service, PhasingStatistics3ServiceLocal {

    private final static Logger LOG = Logger.getLogger(PhasingStatistics3ServiceBean.class);

    // Generic HQL request to find instances of PhasingStatistics3 by pk
    // TODO choose between left/inner join
    private static final String FIND_BY_PK() {
        return "from PhasingStatistics3VO vo " + "where vo.phasingStatisticsId = :pk";
    }

    // Generic HQL request to find all instances of PhasingStatistics3
    // TODO choose between left/inner join
    private static final String FIND_ALL() {
        return "from PhasingStatistics3VO vo ";
    }

    @PersistenceContext(unitName = "ispyb_db")
    private EntityManager entityManager;

    public PhasingStatistics3ServiceBean() {
    };

    /**
     * Create new PhasingStatistics3.
     * @param vo the entity to persist.
     * @return the persisted entity.
     */
    public PhasingStatistics3VO create(final PhasingStatistics3VO vo) throws Exception {

        checkCreateChangeRemoveAccess();
        // TODO Edit this business code
        this.checkAndCompleteData(vo, true);
        this.entityManager.persist(vo);
        return vo;
    }

    /**
     * Update the PhasingStatistics3 data.
     * @param vo the entity data to update.
     * @return the updated entity.
     */
    public PhasingStatistics3VO update(final PhasingStatistics3VO vo) throws Exception {

        checkCreateChangeRemoveAccess();
        // TODO Edit this business code
        this.checkAndCompleteData(vo, false);
        return entityManager.merge(vo);
    }

    /**
     * Remove the PhasingStatistics3 from its pk
     * @param vo the entity to remove.
     */
    public void deleteByPk(final Integer pk) throws Exception {

        checkCreateChangeRemoveAccess();
        PhasingStatistics3VO vo = findByPk(pk);
        // TODO Edit this business code            
        delete(vo);
    }

    /**
     * Remove the PhasingStatistics3
     * @param vo the entity to remove.
     */
    public void delete(final PhasingStatistics3VO vo) throws Exception {

        checkCreateChangeRemoveAccess();
        // TODO Edit this business code
        entityManager.remove(vo);
    }

    /**
     * Finds a Scientist entity by its primary key and set linked value objects if necessary
     * @param pk the primary key
     * @return the PhasingStatistics3 value object
     */
    public PhasingStatistics3VO findByPk(final Integer pk) throws Exception {

        checkCreateChangeRemoveAccess();
        // TODO Edit this business code
        try {
            return (PhasingStatistics3VO) entityManager.createQuery(FIND_BY_PK()).setParameter("pk", pk)
                    .getSingleResult();
        } catch (NoResultException e) {
            return null;
        }
    }

    /**
     * Find all PhasingStatistics3s and set linked value objects if necessary
     * @param withLink1
     * @param withLink2
     */
    @SuppressWarnings("unchecked")
    public List<PhasingStatistics3VO> findAll() throws Exception {

        List<PhasingStatistics3VO> foundEntities = entityManager.createQuery(FIND_ALL()).getResultList();
        return foundEntities;
    }

    /**
     * Check if user has access rights to create, change and remove PhasingStatistics3 entities. If not set rollback only and throw AccessDeniedException
     * @throws AccessDeniedException
     */
    private void checkCreateChangeRemoveAccess() throws Exception {

        //AuthorizationServiceLocal autService = (AuthorizationServiceLocal) ServiceLocator.getInstance().getService(AuthorizationServiceLocalHome.class);         // TODO change method to the one checking the needed access rights
        //autService.checkUserRightToChangeAdminData();
    }

    /**
     * Find all PhasingStatistics3 related to a given autoProc
     */
    @SuppressWarnings("unchecked")
    public List<PhasingStatistics3VO> findFiltered(final Integer autoProcId, final String metric,
            final Boolean withOverall) throws Exception {

        Session session = (Session) this.entityManager.getDelegate();

        Criteria crit = session.createCriteria(PhasingStatistics3VO.class);
        crit.setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY); // DISTINCT RESULTS !
        if (autoProcId != null) {
            Criteria subCritPhasingHasScaling = crit.createCriteria("phasingHasScaling1VO");
            Criteria subCritAutoProcScaling = subCritPhasingHasScaling.createCriteria("autoProcScalingVO");
            Criteria subCritAutoProc = subCritAutoProcScaling.createCriteria("autoProcVO");
            subCritAutoProc.add(Restrictions.eq("autoProcId", autoProcId));
        }
        if (metric != null && metric.trim().length() > 0) {
            crit.add(Restrictions.eq("metric", metric));
        }
        if (withOverall != null && !withOverall) {
            crit.add(Restrictions.not(Restrictions.eq("binNumber", 999)));
        }

        crit.addOrder(Order.desc("phasingStatisticsId"));

        List<PhasingStatistics3VO> foundEntities = crit.list();
        return foundEntities;
    }

    /* Private methods ------------------------------------------------------ */

    /**
     * Checks the data for integrity. E.g. if references and categories exist.
     * @param vo the data to check
     * @param create should be true if the value object is just being created in the DB, this avoids some checks like testing the primary key
     * @exception VOValidateException if data is not correct
     */
    private void checkAndCompleteData(PhasingStatistics3VO vo, boolean create) throws Exception {

        if (create) {
            if (vo.getPhasingStatisticsId() != null) {
                throw new IllegalArgumentException(
                        "Primary key is already set! This must be done automatically. Please, set it to null!");
            }
        } else {
            if (vo.getPhasingStatisticsId() == null) {
                throw new IllegalArgumentException("Primary key is not set for update!");
            }
        }
        // check value object
        vo.checkValues(create);
        // TODO check primary keys for existence in DB
    }

}