io.sloeber.core.managers.Manager.java Source code

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Here is the source code for io.sloeber.core.managers.Manager.java

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/*******************************************************************************
 * Copyright (c) 2015 QNX Software Systems and others.
 * All rights reserved. This program and the accompanying materials
 * are made available under the terms of the Eclipse Public License v1.0
 * which accompanies this distribution, and is available at
 * http://www.eclipse.org/legal/epl-v10.html
 *
 * Contributors:
 *     QNX Software Systems - Initial API and implementation
 *     Jan Baeyens integrated in and extended for the arduino eclipse plugin named Sloeber
 *******************************************************************************/
package io.sloeber.core.managers;

import static java.nio.file.StandardCopyOption.REPLACE_EXISTING;

import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.FileReader;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.Reader;
import java.net.HttpURLConnection;
import java.net.MalformedURLException;
import java.net.URL;
import java.nio.charset.Charset;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;

import org.apache.commons.compress.archivers.ArchiveEntry;
import org.apache.commons.compress.archivers.ArchiveInputStream;
import org.apache.commons.compress.archivers.tar.TarArchiveEntry;
import org.apache.commons.compress.archivers.tar.TarArchiveInputStream;
import org.apache.commons.compress.archivers.zip.ZipArchiveInputStream;
import org.apache.commons.compress.compressors.bzip2.BZip2CompressorInputStream;
import org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream;
import org.eclipse.core.runtime.CoreException;
import org.eclipse.core.runtime.IPath;
import org.eclipse.core.runtime.IProgressMonitor;
import org.eclipse.core.runtime.IStatus;
import org.eclipse.core.runtime.MultiStatus;
import org.eclipse.core.runtime.Platform;
import org.eclipse.core.runtime.Status;

import com.google.gson.Gson;

import io.sloeber.common.Common;
import io.sloeber.common.ConfigurationPreferences;
import io.sloeber.core.Activator;
import io.sloeber.core.api.Defaults;

public class Manager {

    static private List<PackageIndex> packageIndices;
    static private LibraryIndex libraryIndex;
    private static boolean myIsReady = false;

    public static boolean isReady() {
        return myIsReady;
    }

    private Manager() {
    }

    public static void addPackageURLs(HashSet<String> packageUrlsToAdd, boolean forceDownload) {
        HashSet<String> originalBoardUrls = new HashSet<>(
                Arrays.asList(ConfigurationPreferences.getBoardsPackageURLList()));
        packageUrlsToAdd.addAll(originalBoardUrls);

        ConfigurationPreferences.setBoardsPackageURLs(packageUrlsToAdd);
        loadIndices(forceDownload);

    }

    /**
     * Loads all stuff needed and if this is the first time downloads the avr
     * boards and needed tools
     *
     * @param monitor
     */
    public static void startup_Pluging(IProgressMonitor monitor) {
        loadIndices(ConfigurationPreferences.getUpdateJasonFilesValue());
        try {
            List<Board> allBoards = getInstalledBoards();
            if (allBoards.isEmpty()) { // If boards are installed do nothing
                InstallDefaultLibraries(monitor);

                // Downmload sample programs
                downloadAndInstall(Defaults.EXAMPLES_URL, Defaults.EXAMPLE_PACKAGE,
                        Paths.get(ConfigurationPreferences.getInstallationPathExamples().toString()), false,
                        monitor);

                // now add the boards
                Package pkg = packageIndices.get(0).getPackages().get(0);
                if (pkg != null) {
                    ArduinoPlatform platform = pkg.getLatestPlatform(Defaults.PLATFORM_NAME);
                    if (platform == null) {
                        ArduinoPlatform[] platformList = new ArduinoPlatform[pkg.getLatestPlatforms().size()];
                        pkg.getLatestPlatforms().toArray(platformList);
                        platform = platformList[0];
                    }
                    if (platform != null) {
                        downloadAndInstall(platform, false, monitor);
                    }
                }
            }
        } catch (CoreException e) {
            e.printStackTrace();
        }
        myIsReady = true;

    }

    private static void InstallDefaultLibraries(IProgressMonitor monitor) {
        LibraryIndex libindex = getLibraryIndex();

        for (String library : Defaults.INSTALLED_LIBRARIES) {
            Library toInstalLib = libindex.getLatestLibrary(library);
            if (toInstalLib != null) {
                toInstalLib.install(monitor);
            }
        }
    }

    /**
     * Given a platform description in a json file download and install all
     * needed stuff. All stuff is including all tools and core files and
     * hardware specific libraries. That is (on windows) inclusive the make.exe
     *
     * @param platform
     * @param monitor
     * @param object
     * @return
     */
    static public IStatus downloadAndInstall(ArduinoPlatform platform, boolean forceDownload,
            IProgressMonitor monitor) {

        IStatus status = downloadAndInstall(platform.getUrl(), platform.getArchiveFileName(),
                platform.getInstallPath(), forceDownload, monitor);
        if (!status.isOK()) {
            return status;
        }
        MultiStatus mstatus = new MultiStatus(status.getPlugin(), status.getCode(), status.getMessage(),
                status.getException());

        if (platform.getToolsDependencies() != null) {
            for (ToolDependency tool : platform.getToolsDependencies()) {
                monitor.setTaskName(InstallProgress.getRandomMessage());
                mstatus.add(tool.install(monitor));
            }
        }
        // On Windows install make from equations.org
        if (Platform.getOS().equals(Platform.OS_WIN32)) {
            try {
                Path makePath = Paths
                        .get(ConfigurationPreferences.getPathExtensionPath().append("make.exe").toString()); //$NON-NLS-1$
                if (!makePath.toFile().exists()) {
                    Files.createDirectories(makePath.getParent());
                    URL makeUrl = new URL("ftp://ftp.equation.com/make/32/make.exe"); //$NON-NLS-1$
                    Files.copy(makeUrl.openStream(), makePath);
                    makePath.toFile().setExecutable(true, false);

                }
            } catch (IOException e) {
                mstatus.add(new Status(IStatus.ERROR, Activator.getId(), Messages.Manager_Downloading_make_exe, e));
            }
        }

        return mstatus.getChildren().length == 0 ? Status.OK_STATUS : mstatus;

    }

    static private void loadIndices(boolean forceDownload) {
        String[] boardUrls = ConfigurationPreferences.getBoardsPackageURLList();
        packageIndices = new ArrayList<>(boardUrls.length);
        for (String boardUrl : boardUrls) {
            loadPackageIndex(boardUrl, forceDownload);
        }

        loadLibraryIndex(false);

    }

    /**
     * convert a web url to a local file name. The local file name is the cache
     * of the web
     *
     * @param url
     *            url of the file we want a local cache
     * @return the file that represents the file that is the local cache. the
     *         file itself may not exists. If the url is malformed return null;
     * @throws MalformedURLException
     */
    public static File getLocalFileName(String url) {
        URL packageUrl;
        try {
            packageUrl = new URL(url.trim());
        } catch (MalformedURLException e) {
            Common.log(new Status(IStatus.ERROR, Activator.getId(), "Malformed url " + url, e)); //$NON-NLS-1$
            return null;
        }
        String localFileName = Paths.get(packageUrl.getPath()).getFileName().toString();
        Path packagePath = Paths
                .get(ConfigurationPreferences.getInstallationPath().append(localFileName).toString());
        return packagePath.toFile();
    }

    /**
     * This method takes a json boards file url and downloads it and parses it
     * for usage in the boards manager
     *
     * @param url
     *            the url of the file to download and load
     * @param forceDownload
     *            set true if you want to download the file even if it is
     *            already available locally
     */
    static private void loadPackageIndex(String url, boolean forceDownload) {
        File packageFile = getLocalFileName(url);
        if (packageFile == null) {
            return;
        }
        if (!packageFile.exists() || forceDownload) {
            packageFile.getParentFile().mkdirs();
            try {
                myCopy(new URL(url.trim()), packageFile);
            } catch (IOException e) {
                Common.log(new Status(IStatus.ERROR, Activator.getId(), "Unable to download " + url, e)); //$NON-NLS-1$
            }
        }
        if (packageFile.exists()) {
            try (Reader reader = new FileReader(packageFile)) {
                PackageIndex index = new Gson().fromJson(reader, PackageIndex.class);
                index.setOwners(null);
                index.setJsonFile(packageFile);
                packageIndices.add(index);
            } catch (Exception e) {
                Common.log(new Status(IStatus.ERROR, Activator.getId(),
                        "Unable to parse " + packageFile.getAbsolutePath(), e)); //$NON-NLS-1$
                packageFile.delete();// Delete the file so it stops damaging
            }
        }
    }

    static public List<PackageIndex> getPackageIndices() {
        if (packageIndices == null) {
            String[] boardUrls = ConfigurationPreferences.getBoardsPackageURLList();
            packageIndices = new ArrayList<>(boardUrls.length);
            for (String boardUrl : boardUrls) {
                loadPackageIndex(boardUrl, false);
            }
        }
        return packageIndices;
    }

    private static void loadLibraryIndex(boolean download) {
        try {
            URL librariesUrl = new URL(Defaults.LIBRARIES_URL);
            String localFileName = Paths.get(librariesUrl.getPath()).getFileName().toString();
            File librariesFile = ConfigurationPreferences.getInstallationPath().append(localFileName).toFile();
            if (!librariesFile.exists() || download) {
                librariesFile.getParentFile().mkdirs();
                myCopy(librariesUrl, librariesFile);
            }
            if (librariesFile.exists()) {
                try (InputStreamReader reader = new InputStreamReader(new FileInputStream(librariesFile),
                        Charset.forName("UTF8"))) { //$NON-NLS-1$
                    libraryIndex = new Gson().fromJson(reader, LibraryIndex.class);
                    libraryIndex.resolve();
                }
            }
        } catch (IOException e) {
            Common.log(new Status(IStatus.WARNING, Activator.getId(), "Failed to load library index", e)); //$NON-NLS-1$
        }

    }

    static public LibraryIndex getLibraryIndex() {
        if (libraryIndex == null) {
            loadLibraryIndex(false);
        }
        return libraryIndex;
    }

    static public Board getBoard(String boardName, String platformName, String packageName) throws CoreException {
        for (PackageIndex index : packageIndices) {
            Package pkg = index.getPackage(packageName);
            if (pkg != null) {
                ArduinoPlatform platform = pkg.getLatestPlatform(platformName);
                if (platform != null) {
                    Board board = platform.getBoard(boardName);
                    if (board != null) {
                        return board;
                    }
                }
            }
        }
        return null;
    }

    static public List<Board> getBoards() throws CoreException {
        List<Board> boards = new ArrayList<>();
        for (PackageIndex index : packageIndices) {
            for (Package pkg : index.getPackages()) {
                for (ArduinoPlatform platform : pkg.getLatestPlatforms()) {
                    boards.addAll(platform.getBoards());
                }
            }
        }
        return boards;
    }

    public static List<ArduinoPlatform> getPlatforms() {
        List<ArduinoPlatform> platforms = new ArrayList<>();
        for (PackageIndex index : packageIndices) {
            for (Package pkg : index.getPackages()) {
                platforms.addAll(pkg.getPlatforms());
            }
        }
        return platforms;
    }

    public static IPath getPlatformFile(String vendor, String architecture) {

        for (PackageIndex index : packageIndices) {
            for (Package pkg : index.getPackages()) {
                for (ArduinoPlatform curPlatform : pkg.getInstalledPlatforms()) {
                    if (architecture.equalsIgnoreCase(curPlatform.getArchitecture())
                            && (vendor.equalsIgnoreCase(pkg.getMaintainer()))) {
                        return new org.eclipse.core.runtime.Path(curPlatform.getPlatformFile().toString());
                    }
                }
            }
        }
        return null;
    }

    /**
     * Given a platform.txt file find the platform in the platform manager
     *
     * @param platformTxt
     * @return the found platform otherwise null
     */
    public static ArduinoPlatform getPlatform(File platformTxt) {
        String searchString = platformTxt.toString();
        for (PackageIndex index : packageIndices) {
            for (Package pkg : index.getPackages()) {
                for (ArduinoPlatform curPlatform : pkg.getPlatforms()) {
                    String curFile = curPlatform.getPlatformFile().toString();
                    if (searchString.equals(curFile)) {
                        return curPlatform;
                    }
                }
            }
        }
        return null;
    }

    static public List<ArduinoPlatform> getInstalledPlatforms() {
        List<ArduinoPlatform> platforms = new ArrayList<>();
        for (PackageIndex index : packageIndices) {
            for (Package pkg : index.getPackages()) {

                platforms.addAll(pkg.getInstalledPlatforms());

            }
        }
        return platforms;
    }

    static public List<Board> getInstalledBoards() throws CoreException {
        List<Board> boards = new ArrayList<>();
        for (PackageIndex index : packageIndices) {
            for (Package pkg : index.getPackages()) {
                for (ArduinoPlatform platform : pkg.getInstalledPlatforms()) {
                    boards.addAll(platform.getBoards());
                }
            }
        }
        return boards;
    }

    static public List<Package> getPackages() {
        List<Package> packages = new ArrayList<>();
        for (PackageIndex index : packageIndices) {
            packages.addAll(index.getPackages());
        }
        return packages;
    }

    static public Package getPackage(String JasonName, String packageName) {
        for (PackageIndex index : packageIndices) {
            if (index.getJsonFileName().equals(JasonName)) {
                return index.getPackage(packageName);
            }
        }
        return null;
    }

    static public Package getPackage(String packageName) {
        for (PackageIndex index : packageIndices) {
            Package pkg = index.getPackage(packageName);
            if (pkg != null) {
                return pkg;
            }
        }
        return null;
    }

    static public Tool getTool(String packageName, String toolName, String version) {
        for (PackageIndex index : packageIndices) {
            Package pkg = index.getPackage(packageName);
            if (pkg != null) {
                Tool tool = pkg.getTool(toolName, version);
                if (tool != null) {
                    return tool;
                }
            }
        }
        return null;
    }

    /**
     * downloads an archive file from the internet and saves it in the download
     * folder under the name "pArchiveFileName" then extrats the file to
     * pInstallPath if pForceDownload is true the file will be downloaded even
     * if the download file already exists if pForceDownload is false the file
     * will only be downloaded if the download file does not exists The
     * extraction is done with processArchive so only files types supported by
     * this method will be properly extracted
     *
     * @param pURL
     *            the url of the file to download
     * @param pArchiveFileName
     *            the name of the file in the download folder
     * @param pInstallPath
     * @param pForceDownload
     * @param pMonitor
     * @return
     */
    public static IStatus downloadAndInstall(String pURL, String pArchiveFileName, Path pInstallPath,
            boolean pForceDownload, IProgressMonitor pMonitor) {
        IPath dlDir = ConfigurationPreferences.getInstallationPathDownload();
        IPath archivePath = dlDir.append(pArchiveFileName);
        try {
            URL dl = new URL(pURL);
            dlDir.toFile().mkdir();
            if (!archivePath.toFile().exists() || pForceDownload) {
                pMonitor.subTask("Downloading " + pArchiveFileName + " .."); //$NON-NLS-1$ //$NON-NLS-2$
                myCopy(dl, archivePath.toFile());
            }
        } catch (IOException e) {
            return new Status(IStatus.ERROR, Activator.getId(), Messages.Manager_Failed_to_download + pURL, e);
        }
        return processArchive(pArchiveFileName, pInstallPath, pForceDownload, archivePath.toString(), pMonitor);
    }

    private static IStatus processArchive(String pArchiveFileName, Path pInstallPath, boolean pForceDownload,
            String pArchiveFullFileName, IProgressMonitor pMonitor) {
        // Create an ArchiveInputStream with the correct archiving algorithm
        String faileToExtractMessage = Messages.Manager_Failed_to_extract + pArchiveFullFileName;
        if (pArchiveFileName.endsWith("tar.bz2")) { //$NON-NLS-1$
            try (ArchiveInputStream inStream = new TarArchiveInputStream(
                    new BZip2CompressorInputStream(new FileInputStream(pArchiveFullFileName)))) {
                return extract(inStream, pInstallPath.toFile(), 1, pForceDownload, pMonitor);
            } catch (IOException | InterruptedException e) {
                return new Status(IStatus.ERROR, Activator.getId(), faileToExtractMessage, e);
            }
        } else if (pArchiveFileName.endsWith("zip")) { //$NON-NLS-1$
            try (ArchiveInputStream in = new ZipArchiveInputStream(new FileInputStream(pArchiveFullFileName))) {
                return extract(in, pInstallPath.toFile(), 1, pForceDownload, pMonitor);
            } catch (IOException | InterruptedException e) {
                return new Status(IStatus.ERROR, Activator.getId(), faileToExtractMessage, e);
            }
        } else if (pArchiveFileName.endsWith("tar.gz")) { //$NON-NLS-1$
            try (ArchiveInputStream in = new TarArchiveInputStream(
                    new GzipCompressorInputStream(new FileInputStream(pArchiveFullFileName)))) {
                return extract(in, pInstallPath.toFile(), 1, pForceDownload, pMonitor);
            } catch (IOException | InterruptedException e) {
                return new Status(IStatus.ERROR, Activator.getId(), faileToExtractMessage, e);
            }
        } else if (pArchiveFileName.endsWith("tar")) { //$NON-NLS-1$
            try (ArchiveInputStream in = new TarArchiveInputStream(new FileInputStream(pArchiveFullFileName))) {
                return extract(in, pInstallPath.toFile(), 1, pForceDownload, pMonitor);
            } catch (IOException | InterruptedException e) {
                return new Status(IStatus.ERROR, Activator.getId(), faileToExtractMessage, e);
            }
        } else {
            return new Status(IStatus.ERROR, Activator.getId(), Messages.Manager_Format_not_supported);
        }
    }

    public static IStatus extract(ArchiveInputStream in, File destFolder, int stripPath, boolean overwrite,
            IProgressMonitor pMonitor) throws IOException, InterruptedException {

        // Folders timestamps must be set at the end of archive extraction
        // (because creating a file in a folder alters the folder's timestamp)
        Map<File, Long> foldersTimestamps = new HashMap<>();

        String pathPrefix = ""; //$NON-NLS-1$

        Map<File, File> hardLinks = new HashMap<>();
        Map<File, Integer> hardLinksMode = new HashMap<>();
        Map<File, String> symLinks = new HashMap<>();
        Map<File, Long> symLinksModifiedTimes = new HashMap<>();

        // Cycle through all the archive entries
        while (true) {
            ArchiveEntry entry = in.getNextEntry();
            if (entry == null) {
                break;
            }

            // Extract entry info
            long size = entry.getSize();
            String name = entry.getName();
            boolean isDirectory = entry.isDirectory();
            boolean isLink = false;
            boolean isSymLink = false;
            String linkName = null;
            Integer mode = null;
            Long modifiedTime = new Long(entry.getLastModifiedDate().getTime());

            pMonitor.subTask("Processing " + name); //$NON-NLS-1$

            {
                // Skip MacOSX metadata
                // http://superuser.com/questions/61185/why-do-i-get-files-like-foo-in-my-tarball-on-os-x
                int slash = name.lastIndexOf('/');
                if (slash == -1) {
                    if (name.startsWith("._")) { //$NON-NLS-1$
                        continue;
                    }
                } else {
                    if (name.substring(slash + 1).startsWith("._")) { //$NON-NLS-1$
                        continue;
                    }
                }
            }

            // Skip git metadata
            // http://www.unix.com/unix-for-dummies-questions-and-answers/124958-file-pax_global_header-means-what.html
            if (name.contains("pax_global_header")) { //$NON-NLS-1$
                continue;
            }

            if (entry instanceof TarArchiveEntry) {
                TarArchiveEntry tarEntry = (TarArchiveEntry) entry;
                mode = new Integer(tarEntry.getMode());
                isLink = tarEntry.isLink();
                isSymLink = tarEntry.isSymbolicLink();
                linkName = tarEntry.getLinkName();
            }

            // On the first archive entry, if requested, detect the common path
            // prefix to be stripped from filenames
            int localstripPath = stripPath;
            if (localstripPath > 0 && pathPrefix.isEmpty()) {
                int slash = 0;
                while (localstripPath > 0) {
                    slash = name.indexOf("/", slash); //$NON-NLS-1$
                    if (slash == -1) {
                        throw new IOException(Messages.Manager_no_single_root_folder);
                    }
                    slash++;
                    localstripPath--;
                }
                pathPrefix = name.substring(0, slash);
            }

            // Strip the common path prefix when requested
            if (!name.startsWith(pathPrefix)) {
                throw new IOException(Messages.Manager_no_single_root_folder_while_file + name
                        + Messages.Manager_is_outside + pathPrefix);
            }
            name = name.substring(pathPrefix.length());
            if (name.isEmpty()) {
                continue;
            }
            File outputFile = new File(destFolder, name);

            File outputLinkedFile = null;
            if (isLink && linkName != null) {
                if (!linkName.startsWith(pathPrefix)) {
                    throw new IOException(Messages.Manager_no_single_root_folder_while_file + linkName
                            + Messages.Manager_is_outside + pathPrefix);
                }
                linkName = linkName.substring(pathPrefix.length());
                outputLinkedFile = new File(destFolder, linkName);
            }
            if (isSymLink) {
                // Symbolic links are referenced with relative paths
                outputLinkedFile = new File(linkName);
                if (outputLinkedFile.isAbsolute()) {
                    System.err.println(Messages.Manager_Warning_file + outputFile
                            + Messages.Manager_links_to_absolute_path + outputLinkedFile);
                    System.err.println();
                }
            }

            // Safety check
            if (isDirectory) {
                if (outputFile.isFile() && !overwrite) {
                    throw new IOException(
                            Messages.Manager_Cant_create_folder + outputFile + Messages.Manager_File_exists);
                }
            } else {
                // - isLink
                // - isSymLink
                // - anything else
                if (outputFile.exists() && !overwrite) {
                    throw new IOException(
                            Messages.Manager_Cant_extract_file + outputFile + Messages.Manager_File_already_exists);
                }
            }

            // Extract the entry
            if (isDirectory) {
                if (!outputFile.exists() && !outputFile.mkdirs()) {
                    throw new IOException(Messages.Manager_Cant_create_folder + outputFile);
                }
                foldersTimestamps.put(outputFile, modifiedTime);
            } else if (isLink) {
                hardLinks.put(outputFile, outputLinkedFile);
                hardLinksMode.put(outputFile, mode);
            } else if (isSymLink) {
                symLinks.put(outputFile, linkName);
                symLinksModifiedTimes.put(outputFile, modifiedTime);
            } else {
                // Create the containing folder if not exists
                if (!outputFile.getParentFile().isDirectory()) {
                    outputFile.getParentFile().mkdirs();
                }
                copyStreamToFile(in, size, outputFile);
                outputFile.setLastModified(modifiedTime.longValue());
            }

            // Set file/folder permission
            if (mode != null && !isSymLink && outputFile.exists()) {
                chmod(outputFile, mode.intValue());
            }
        }

        for (Map.Entry<File, File> entry : hardLinks.entrySet()) {
            if (entry.getKey().exists() && overwrite) {
                entry.getKey().delete();
            }
            link(entry.getValue(), entry.getKey());
            Integer mode = hardLinksMode.get(entry.getKey());
            if (mode != null) {
                chmod(entry.getKey(), mode.intValue());
            }
        }

        for (Map.Entry<File, String> entry : symLinks.entrySet()) {
            if (entry.getKey().exists() && overwrite) {
                entry.getKey().delete();
            }
            symlink(entry.getValue(), entry.getKey());
            entry.getKey().setLastModified(symLinksModifiedTimes.get(entry.getKey()).longValue());
        }

        // Set folders timestamps
        for (Map.Entry<File, Long> entry : foldersTimestamps.entrySet()) {
            entry.getKey().setLastModified(entry.getValue().longValue());
        }

        return Status.OK_STATUS;

    }

    private static void symlink(String something, File somewhere) throws IOException, InterruptedException {
        Process process = Runtime.getRuntime().exec(
                new String[] { "ln", "-s", something, somewhere.getAbsolutePath() }, //$NON-NLS-1$ //$NON-NLS-2$
                null, somewhere.getParentFile());
        process.waitFor();
    }

    private static void link(File something, File somewhere) throws IOException, InterruptedException {
        Process process = Runtime.getRuntime()
                .exec(new String[] { "ln", something.getAbsolutePath(), somewhere.getAbsolutePath() }, null, null); //$NON-NLS-1$
        process.waitFor();
    }

    private static void chmod(File file, int mode) throws IOException, InterruptedException {
        String octal = Integer.toOctalString(mode);
        if (Platform.getOS().equals(Platform.OS_WIN32)) {
            boolean ownerExecute = (((mode / (8 * 8)) & 1) == 1);
            boolean ownerRead = (((mode / (8 * 8)) & 4) == 4);
            boolean ownerWrite = (((mode / (8 * 8)) & 2) == 2);
            boolean everyoneExecute = (((mode / 8) & 1) == 1);
            boolean everyoneRead = (((mode / 8) & 4) == 4);
            boolean everyoneWrite = (((mode / 8) & 2) == 2);
            file.setWritable(true, false);
            file.setExecutable(ownerExecute, !everyoneExecute);
            file.setReadable(ownerRead, !everyoneRead);
            file.setWritable(ownerWrite, !everyoneWrite);
        } else {
            Process process = Runtime.getRuntime().exec(new String[] { "chmod", octal, file.getAbsolutePath() }, //$NON-NLS-1$
                    null, null);
            process.waitFor();
        }
    }

    private static void copyStreamToFile(InputStream in, long size, File outputFile) throws IOException {
        try (FileOutputStream fos = new FileOutputStream(outputFile)) {

            // if size is not available, copy until EOF...
            if (size == -1) {
                byte[] buffer = new byte[4096];
                int length;
                while ((length = in.read(buffer)) != -1) {
                    fos.write(buffer, 0, length);
                }
                return;
            }

            // ...else copy just the needed amount of bytes
            byte[] buffer = new byte[4096];
            long leftToWrite = size;
            while (leftToWrite > 0) {
                int length = in.read(buffer);
                if (length <= 0) {
                    throw new IOException(Messages.Manager_Failed_to_extract + outputFile.getAbsolutePath());
                }
                fos.write(buffer, 0, length);
                leftToWrite -= length;
            }
        }
    }

    /**
     * compares 2 strings as if they are version numbers if version1<version2
     * returns -1 if version1==version2(also if both are null) returns 0 else
     * return 1 This method caters for the null case
     *
     * @param version1
     * @param version2
     * @return
     */
    public static int compareVersions(String version1, String version2) {
        if (version1 == null) {
            return version2 == null ? 0 : -1;
        }

        if (version2 == null) {
            return 1;
        }

        String[] v1 = version1.split("\\."); //$NON-NLS-1$
        String[] v2 = version2.split("\\."); //$NON-NLS-1$
        for (int i = 0; i < Math.max(v1.length, v2.length); ++i) {
            if (v1.length <= i) {
                return v2.length < i ? 0 : -1;
            }

            if (v2.length <= i) {
                return 1;
            }

            try {
                int vi1 = Integer.parseInt(v1[i]);
                int vi2 = Integer.parseInt(v2[i]);
                if (vi1 < vi2) {
                    return -1;
                }

                if (vi1 > vi2) {
                    return 1;
                }
            } catch (NumberFormatException e) {
                // not numbers, do string compares
                int c = v1[i].compareTo(v2[i]);
                if (c < 0) {
                    return -1;
                }
                if (c > 0) {
                    return 1;
                }
            }
        }

        return 0;
    }

    /**
     * This method removes the json files from disk and removes memory
     * references to these files or their content
     *
     * @param packageUrlsToRemove
     */
    public static void removeBoardsPackageURLs(Set<String> packageUrlsToRemove) {
        // remove the files from memory
        Set<String> activeBoardUrls = new HashSet<>(
                Arrays.asList(ConfigurationPreferences.getBoardsPackageURLList()));

        activeBoardUrls.removeAll(packageUrlsToRemove);

        ConfigurationPreferences.setBoardsPackageURLs(activeBoardUrls.toArray(null));

        // remove the files from disk
        for (String curJson : packageUrlsToRemove) {
            File localFile = getLocalFileName(curJson);
            if (localFile.exists()) {
                localFile.delete();
            }
        }

        // reload the indices (this will remove all potential remaining
        // references
        // existing files do not need to be refreshed as they have been
        // refreshed at startup
        loadIndices(false);

    }

    public static String[] getBoardsPackageURLList() {
        return ConfigurationPreferences.getBoardsPackageURLList();
    }

    /**
     * Completely replace the list with jsons with a new list
     *
     * @param newBoardJsonUrls
     */
    public static void setBoardsPackageURL(String[] newBoardJsonUrls) {

        String curJsons[] = getBoardsPackageURLList();
        HashSet<String> origJsons = new HashSet<>(Arrays.asList(curJsons));
        HashSet<String> currentSelectedJsons = new HashSet<>(Arrays.asList(newBoardJsonUrls));
        currentSelectedJsons.removeAll(origJsons);
        // remove the files from disk which were in the old lst but not in the
        // new one
        for (String curJson : currentSelectedJsons) {
            File localFile = getLocalFileName(curJson);
            if (localFile.exists()) {
                localFile.delete();
            }
        }
        // save to configurationsettings before calling LoadIndices
        ConfigurationPreferences.setBoardsPackageURLs(newBoardJsonUrls);
        // reload the indices (this will remove all potential remaining
        // references
        // existing files do not need to be refreshed as they have been
        // refreshed at startup
        // new files will be added
        loadIndices(false);
    }

    public static String getBoardsPackageURLs() {
        return ConfigurationPreferences.getDefaultBoardsPackageURLs();
    }

    public static void setReady(boolean b) {
        myIsReady = b;

    }

    /**
     * copy a url locally taking into account redirections
     *
     * @param url
     * @param localFile
     */
    @SuppressWarnings("nls")
    private static void myCopy(URL url, File localFile) {
        try {
            HttpURLConnection conn = (HttpURLConnection) url.openConnection();
            conn.setReadTimeout(5000);
            conn.addRequestProperty("Accept-Language", "en-US,en;q=0.8");
            conn.addRequestProperty("User-Agent", "Mozilla");
            conn.addRequestProperty("Referer", "google.com");

            // normally, 3xx is redirect
            int status = conn.getResponseCode();

            if (status != HttpURLConnection.HTTP_OK) {
                if (status == HttpURLConnection.HTTP_MOVED_TEMP || status == HttpURLConnection.HTTP_MOVED_PERM
                        || status == HttpURLConnection.HTTP_SEE_OTHER)

                    Files.copy(new URL(conn.getHeaderField("Location")).openStream(), localFile.toPath(),
                            REPLACE_EXISTING);
            } else {
                Files.copy(url.openStream(), localFile.toPath(), REPLACE_EXISTING);
            }

        } catch (Exception e) {
            Common.log(new Status(IStatus.WARNING, Activator.getId(), "Failed to download url " + url, e));
        }
    }

}