io.bfscan.clueweb12.ProcessVByteDocVectors.java Source code

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/*
 * ClueWeb Tools: Hadoop tools for manipulating ClueWeb collections
 *
 * Licensed under the Apache License, Version 2.0 (the "License"); you
 * may not use this file except in compliance with the License. You may
 * obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
 * implied. See the License for the specific language governing
 * permissions and limitations under the License.
 */

package io.bfscan.clueweb12;

import io.bfscan.data.VByteDocVector;
import io.bfscan.dictionary.DefaultFrequencySortedDictionary;

import java.io.IOException;
import java.util.Arrays;
import java.util.List;

import org.apache.commons.cli.CommandLine;
import org.apache.commons.cli.CommandLineParser;
import org.apache.commons.cli.GnuParser;
import org.apache.commons.cli.HelpFormatter;
import org.apache.commons.cli.OptionBuilder;
import org.apache.commons.cli.Options;
import org.apache.commons.cli.ParseException;
import org.apache.hadoop.conf.Configured;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.BytesWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;
import org.apache.hadoop.mapreduce.lib.output.TextOutputFormat;
import org.apache.hadoop.util.Tool;
import org.apache.hadoop.util.ToolRunner;
import org.apache.log4j.Logger;

import com.google.common.base.Joiner;
import com.google.common.collect.Lists;

public class ProcessVByteDocVectors extends Configured implements Tool {
    private static final Logger LOG = Logger.getLogger(ProcessVByteDocVectors.class);

    private static final Joiner JOINER = Joiner.on("|");

    private static class MyMapper extends Mapper<Text, BytesWritable, Text, Text> {
        private static final VByteDocVector DOC = new VByteDocVector();

        private DefaultFrequencySortedDictionary dictionary;

        @Override
        public void setup(Context context) throws IOException {
            FileSystem fs = FileSystem.get(context.getConfiguration());
            String path = context.getConfiguration().get(DICTIONARY_OPTION);
            dictionary = new DefaultFrequencySortedDictionary(path, fs);
        }

        @Override
        public void map(Text key, BytesWritable bytes, Context context) throws IOException, InterruptedException {
            VByteDocVector.fromBytesWritable(bytes, DOC);

            List<String> terms = Lists.newArrayList();
            for (int termid : DOC.getTermIds()) {
                terms.add(dictionary.getTerm(termid));
            }

            context.write(key, new Text(JOINER.join(terms)));
        }
    }

    public static final String INPUT_OPTION = "input";
    public static final String OUTPUT_OPTION = "output";
    public static final String DICTIONARY_OPTION = "dictionary";

    /**
     * Runs this tool.
     */
    @SuppressWarnings("static-access")
    public int run(String[] args) throws Exception {
        Options options = new Options();

        options.addOption(
                OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT_OPTION));
        options.addOption(
                OptionBuilder.withArgName("path").hasArg().withDescription("output path").create(OUTPUT_OPTION));
        options.addOption(
                OptionBuilder.withArgName("path").hasArg().withDescription("dictionary").create(DICTIONARY_OPTION));

        CommandLine cmdline;
        CommandLineParser parser = new GnuParser();
        try {
            cmdline = parser.parse(options, args);
        } catch (ParseException exp) {
            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp(this.getClass().getName(), options);
            ToolRunner.printGenericCommandUsage(System.out);
            System.err.println("Error parsing command line: " + exp.getMessage());
            return -1;
        }

        if (!cmdline.hasOption(INPUT_OPTION) || !cmdline.hasOption(OUTPUT_OPTION)
                || !cmdline.hasOption(DICTIONARY_OPTION)) {
            HelpFormatter formatter = new HelpFormatter();
            formatter.printHelp(this.getClass().getName(), options);
            ToolRunner.printGenericCommandUsage(System.out);
            return -1;
        }

        String input = cmdline.getOptionValue(INPUT_OPTION);
        String output = cmdline.getOptionValue(OUTPUT_OPTION);
        String dictionary = cmdline.getOptionValue(DICTIONARY_OPTION);

        LOG.info("Tool name: " + ProcessVByteDocVectors.class.getSimpleName());
        LOG.info(" - input: " + input);
        LOG.info(" - output: " + output);
        LOG.info(" - dictionary: " + dictionary);

        Job job = new Job(getConf(), ProcessVByteDocVectors.class.getSimpleName() + ":" + input);
        job.setJarByClass(ProcessVByteDocVectors.class);

        job.setNumReduceTasks(0);

        FileInputFormat.setInputPaths(job, input);
        FileOutputFormat.setOutputPath(job, new Path(output));

        job.getConfiguration().set(DICTIONARY_OPTION, dictionary);

        job.setInputFormatClass(SequenceFileInputFormat.class);
        job.setOutputFormatClass(TextOutputFormat.class);

        job.setMapOutputKeyClass(Text.class);
        job.setMapOutputValueClass(Text.class);

        job.setMapperClass(MyMapper.class);

        FileSystem.get(getConf()).delete(new Path(output), true);

        long startTime = System.currentTimeMillis();
        job.waitForCompletion(true);
        LOG.info("Job Finished in " + (System.currentTimeMillis() - startTime) / 1000.0 + " seconds");

        return 0;
    }

    /**
     * Dispatches command-line arguments to the tool via the <code>ToolRunner</code>.
     */
    public static void main(String[] args) throws Exception {
        LOG.info("Running " + ProcessVByteDocVectors.class.getCanonicalName() + " with args "
                + Arrays.toString(args));
        ToolRunner.run(new ProcessVByteDocVectors(), args);
    }
}