gov.nih.nci.nbia.customserieslist.FileGenerator.java Source code

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Here is the source code for gov.nih.nci.nbia.customserieslist.FileGenerator.java

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/*L
 *  Copyright SAIC, Ellumen and RSNA (CTP)
 *
 *
 *  Distributed under the OSI-approved BSD 3-Clause License.
 *  See http://ncip.github.com/national-biomedical-image-archive/LICENSE.txt for details.
 */

package gov.nih.nci.nbia.customserieslist;

import gov.nih.nci.nbia.lookup.*;
import gov.nih.nci.nbia.dao.StudyDAO;
import gov.nih.nci.nbia.dto.SeriesDTO;
import gov.nih.nci.nbia.dto.StudyDTO;
import gov.nih.nci.nbia.util.SpringApplicationContext;

import java.text.DateFormat;
import java.text.SimpleDateFormat;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.lang.StringEscapeUtils;

public class FileGenerator {

    /**
     * generate comma separate string from the series instance uid list
     * @param seriesItems
     */
    public String generate(List<BasketSeriesItemBean> seriesItems) {
        StringBuilder sb = new StringBuilder();
        int size = seriesItems.size();
        for (int i = 0; i < size; i++) {
            BasketSeriesItemBean bsib = seriesItems.get(i);
            sb.append(bsib.getSeriesId());
            sb.append(",");
            sb.append("\n");
        }
        int lastComma = sb.lastIndexOf(",");

        //System.out.println("char at length - 1: " + sb.charAt(sb.length() - 1) +  " length: " + sb.length() + " lastComma: " + lastComma);
        sb.replace(lastComma, lastComma, "");
        sb.trimToSize();
        //System.out.println("length: " + sb.length());
        return sb.toString();
    }

    /**
     * generate comma separate string from the series instance uid list
     * @param seriesItems
    */
    public String generateImageMetadata(List<BasketSeriesItemBean> seriesItems) {
        String[] csvHeaders = new String[] { "Collection", "Patient Id", "Study Date", "Study Description",
                "Modality", "Series Description", "Manufacturer", "Manufacturer Model", "Software Version",
                "Series UID" };
        StringBuilder sb = new StringBuilder();
        for (String csvHeader : csvHeaders) {
            sb.append(csvHeader);
            sb.append(",");
        }
        sb.append("\n");
        int size = seriesItems.size();
        List<Integer> seriesPKIdLst = new ArrayList<Integer>();
        for (int i = 0; i < size; i++) {
            BasketSeriesItemBean bsib = seriesItems.get(i);
            seriesPKIdLst.add(bsib.getSeriesPkId());
        }
        StudyDAO studyDAO = (StudyDAO) SpringApplicationContext.getBean("studyDAO");
        List<StudyDTO> studies = studyDAO.findStudiesBySeriesIdDBSorted(seriesPKIdLst);
        DateFormat df = new SimpleDateFormat("MM/dd/yyyy");
        for (StudyDTO study : studies) {
            List<SeriesDTO> seriesLst = study.getSeriesList();
            for (SeriesDTO series : seriesLst) {
                sb.append(series.getProject());
                sb.append(",");
                sb.append(series.getPatientId());
                sb.append(",");
                sb.append(df.format(study.getDate()));
                sb.append(",");
                sb.append(StringEscapeUtils.escapeCsv(study.getDescription()));
                sb.append(",");
                sb.append(series.getModality());
                sb.append(",");
                sb.append(StringEscapeUtils.escapeCsv(series.getDescription()));
                sb.append(",");
                sb.append(StringEscapeUtils.escapeCsv(series.getManufacturer()));
                sb.append(",");
                sb.append(StringEscapeUtils.escapeCsv(series.getManufacturerModelName()));
                sb.append(",");
                sb.append(StringEscapeUtils.escapeCsv(series.getSoftwareVersion()));
                sb.append(",");
                sb.append(series.getSeriesId());
                sb.append(",");
                sb.append("\n");
            }
        }
        int lastComma = sb.lastIndexOf(",");
        sb.replace(lastComma, lastComma, "");
        sb.trimToSize();
        return sb.toString();
    }
}