gov.nih.nci.ispy.web.ajax.IdLookup.java Source code

Introduction

Here is the source code for gov.nih.nci.ispy.web.ajax.IdLookup.java

Source

/*L
 *  Copyright SAIC
 *
 *  Distributed under the OSI-approved BSD 3-Clause License.
 *  See http://ncip.github.com/i-spy/LICENSE.txt for details.
 */

package gov.nih.nci.ispy.web.ajax;

import gov.nih.nci.ispy.service.annotation.IdMapperFileBasedService;
import gov.nih.nci.ispy.service.annotation.RegistrantInfo;
import gov.nih.nci.ispy.service.annotation.SampleInfo;

import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;

import javax.naming.OperationNotSupportedException;

import org.apache.commons.lang.StringUtils;
import org.json.simple.JSONArray;
import org.json.simple.JSONObject;

public class IdLookup {

    public static IdMapperFileBasedService idMapper = null;

    public IdLookup() {
        // TODO Auto-generated constructor stub
        idMapper = IdMapperFileBasedService.getInstance();
    }

    public String lookup(String ids) {

        String results = "";
        //clean the input and validate
        String inputString = ids.trim().replace(" ", "");
        String[] st = StringUtils.split(inputString, ",");
        //construct the inputlist
        List<String> inputList = new ArrayList<String>();
        inputList = Arrays.asList(st);

        //pass the input list to the service
        List<RegistrantInfo> entries = idMapper.getMapperEntriesForIds(inputList);

        //process the results for return to presentation
        //Document document = DocumentHelper.createDocument();
        //Element container = document.addElement("div");

        JSONArray regs = new JSONArray(); //make an array of registrants
        regs.add(inputString);

        //Element report = document.addElement( "table" ).addAttribute("name", inputString);
        for (RegistrantInfo entry : entries) {
            //Element reg = report.addElement( "registrant" ).addAttribute("regId", entry.getRegistrationId());

            //for each registrant make an array of samples
            JSONArray sams = new JSONArray();

            for (SampleInfo sampleInfo : entry.getAssociatedSamples()) {

                JSONObject sam = new JSONObject();
                sam.put("regId", entry.getRegistrationId());
                sam.put("labtrackId", sampleInfo.getLabtrackId());
                sam.put("timePoint", String.valueOf(sampleInfo.getTimepoint()));
                sam.put("coreType", String.valueOf(sampleInfo.getCoreType()));
                sam.put("sectionInfo", String.valueOf(sampleInfo.getSectionInfo()));

                /*
                Element row = reg.addElement( "sample" );
                    
                Element cell = row.addElement( "regId" );
                    
                cell.addText(entry.getRegistrationId());
                  cell = null;
                cell = row.addElement( "labtrackId" );
                cell.addText(sampleInfo.getLabtrackId());
                  cell = null;
                cell = row.addElement( "timePoint" );
                cell.addText(String.valueOf(sampleInfo.getTimepoint()));
                  cell = null;
                cell = row.addElement( "coreType" );
                cell.addText(String.valueOf(sampleInfo.getCoreType()));
                  cell = null;
                cell = row.addElement( "sectionInfo" );
                cell.addText(String.valueOf(sampleInfo.getSectionInfo()));
                    
                */

                sams.add(sam);
            }

            regs.add(sams);
        }

        /*
        for (RegistrantInfo entry:entries) {
           results += "[\"" + entry.getRegistrationId() + "\"," ;
           for(SampleInfo sampleInfo : entry.getAssociatedSamples())   {
            
           }         
        }
        */

        //return document;
        return regs.toString();

    }

    public String createPatientList(String[] list, String name) {
        String success = "fail";
        /*
        //create list w/ type=patient
        String success = "fail";
        ISPYListManager um = ISPYListManager.getInstance();
        try   {
         UserList ul = um.createList(ListType.PatientDID, name, Arrays.asList(list));
         ISPYUserListBeanHelper ulbh = new ISPYUserListBeanHelper();
         ulbh.addList(ul);
         success = "success";
        }
        catch (Exception e) {
         // TODO: handle exception
        }
        return success;
        */
        try {
            success = DynamicListHelper.createPatientList(list, name);

        } catch (OperationNotSupportedException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
        return success;
    }

    public static String getCSV(String lookup) {
        String csv = "";
        String inputString = lookup.trim().replace(" ", "");
        String[] st = StringUtils.split(inputString, ",");
        List<String> inputList = new ArrayList<String>();
        inputList = Arrays.asList(st);
        List<RegistrantInfo> entries = idMapper.getMapperEntriesForIds(inputList);

        csv += "RegId,LabTrak ID,Core Type,Timepoint,Section\r\n";

        for (RegistrantInfo entry : entries) {
            for (SampleInfo sampleInfo : entry.getAssociatedSamples()) {
                csv += entry.getRegistrationId() + "," + sampleInfo.getLabtrackId() + ","
                        + sampleInfo.getCoreType().toString() + "," + sampleInfo.getTimepoint().toString() + ",'"
                        + sampleInfo.getSectionInfo() + "'\r\n";
            }
        }
        return csv;
    }
}