gov.nih.nci.cabig.caaers.domain.dto.AeMergeDTO.java Source code

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Here is the source code for gov.nih.nci.cabig.caaers.domain.dto.AeMergeDTO.java

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/*******************************************************************************
 * Copyright SemanticBits, Northwestern University and Akaza Research
 * 
 * Distributed under the OSI-approved BSD 3-Clause License.
 * See http://ncip.github.com/caaers/LICENSE.txt for details.
 ******************************************************************************/
package gov.nih.nci.cabig.caaers.domain.dto;

import gov.nih.nci.cabig.caaers.utils.JSONUtils;
import org.apache.commons.lang.StringUtils;

import java.util.List;

/**
 * @author Biju Joseph
 */
public class AeMergeDTO {
    Integer interalAeId;
    Integer externalAeId;
    int merges[] = new int[7];

    public Integer getInteralAeId() {
        return interalAeId;
    }

    public void setInteralAeId(Integer interalAeId) {
        this.interalAeId = interalAeId;
    }

    public Integer getExternalAeId() {
        return externalAeId;
    }

    public void setExternalAeId(Integer externalAeId) {
        this.externalAeId = externalAeId;
    }

    public int[] getMerges() {
        return merges;
    }

    public void setMerges(int[] merges) {
        this.merges = merges;
    }

    public void copyChanges(AdverseEventDTO iae, AdverseEventDTO eae, AdverseEventDTO mergedAe) {
        List<String> diff = iae.diff(eae);
        if (diff.contains("term")) {
            if (mergedAe.getTerm().isSame(iae.getTerm()))
                merges[0] = 1;
            else
                merges[0] = 2;
        }
        if (diff.contains("grade")) {
            if (StringUtils.equals(iae.getGrade(), mergedAe.getGrade()))
                merges[1] = 1;
            else
                merges[1] = 2;
        }
        if (diff.contains("startDate")) {
            if (StringUtils.equals(iae.getStartDate(), mergedAe.getStartDate()))
                merges[2] = 1;
            else
                merges[2] = 2;
        }
        if (diff.contains("endDate")) {
            if (StringUtils.equals(iae.getEndDate(), mergedAe.getEndDate()))
                merges[3] = 1;
            else
                merges[3] = 2;
        }
        if (diff.contains("verbatim")) {
            if (StringUtils.equals(iae.getVerbatim(), mergedAe.getVerbatim()))
                merges[4] = 1;
            else
                merges[4] = 2;
        }
        if (diff.contains("whySerious")) {
            if (StringUtils.equals(iae.getWhySerious(), mergedAe.getWhySerious()))
                merges[5] = 1;
            else
                merges[5] = 2;
        }
        if (diff.contains("attribution")) {
            if (StringUtils.equals(iae.getAttribution(), mergedAe.getAttribution()))
                merges[6] = 1;
            else
                merges[6] = 2;
        }
    }

    public void mergeChanges(AdverseEventDTO iae, AdverseEventDTO eae, AdverseEventDTO mergedAe) {
        if (merges != null) {
            mergedAe.setExternalID(eae.getExternalID());

            if (merges[0] == 1) {
                mergedAe.setTerm(iae.getTerm().clone());
            } else if (merges[0] == 2) {
                mergedAe.setTerm(eae.getTerm().clone());
            }

            if (merges[1] == 1) {
                mergedAe.setGrade(iae.getGrade());
            } else if (merges[1] == 2) {
                mergedAe.setGrade(eae.getGrade());
            }

            if (merges[2] == 1) {
                mergedAe.setStartDate(iae.getStartDate());
            } else if (merges[2] == 2) {
                mergedAe.setStartDate(eae.getStartDate());
            }
            if (merges[3] == 1) {
                mergedAe.setEndDate(iae.getEndDate());
            } else if (merges[3] == 2) {
                mergedAe.setEndDate(eae.getEndDate());
            }

            if (merges[4] == 1) {
                mergedAe.setVerbatim(iae.getVerbatim());
            } else if (merges[4] == 2) {
                mergedAe.setVerbatim(eae.getVerbatim());
            }
            if (merges[5] == 1) {
                mergedAe.setWhySerious(iae.getWhySerious());
            } else if (merges[5] == 2) {
                mergedAe.setWhySerious(eae.getWhySerious());
            }

            if (merges[6] == 1) {
                mergedAe.setAttribution(iae.getAttribution());
            } else if (merges[6] == 2) {
                mergedAe.setAttribution(eae.getAttribution());
            }

        }
    }

    public static String seralize(AeMergeDTO m) {
        StringBuilder sb = new StringBuilder("{");
        sb.append("i:").append(m.getInteralAeId().intValue());
        sb.append(",e:").append(m.getExternalAeId().intValue());
        sb.append(",m:").append(JSONUtils.toJSON(m.getMerges()));
        return sb.append("}").toString();
    }

    public static AeMergeDTO deseralize(String s) {
        AeMergeDTO m = new AeMergeDTO();
        int p1 = s.indexOf("i:") + 2;
        int p2 = s.indexOf(',', p1);
        String ae1 = s.substring(p1, p2);
        int p3 = s.indexOf("e:") + 2;
        int p4 = s.indexOf(',', p3);
        String ae2 = s.substring(p3, p4);
        int p5 = s.indexOf("m:[") + 3;
        int p6 = s.indexOf(']', p5);

        m.setInteralAeId(Integer.parseInt(ae1));
        m.setExternalAeId(Integer.parseInt(ae2));

        String arrStr = p6 - p5 > 1 ? s.substring(p5, p6) : null;
        m.setMerges(parseCommaSeperatedIntegers(arrStr));
        return m;
    }

    public static int[] parseCommaSeperatedIntegers(String s) {
        String[] ids = StringUtils.split(s, ",");
        if (ids != null) {
            int[] merges = new int[ids.length];
            for (int i = 0; i < merges.length; i++) {
                merges[i] = Integer.parseInt(ids[i]);
            }
            return merges;
        }
        return new int[0];
    }
}