gov.nih.nci.cabig.caaers.domain.AdverseEventMeddraLowLevelTerm.java Source code

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Here is the source code for gov.nih.nci.cabig.caaers.domain.AdverseEventMeddraLowLevelTerm.java

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/*******************************************************************************
 * Copyright SemanticBits, Northwestern University and Akaza Research
 * 
 * Distributed under the OSI-approved BSD 3-Clause License.
 * See http://ncip.github.com/caaers/LICENSE.txt for details.
 ******************************************************************************/
package gov.nih.nci.cabig.caaers.domain;

import gov.nih.nci.cabig.caaers.domain.meddra.LowLevelTerm;
import org.apache.commons.lang.ArrayUtils;
import org.hibernate.annotations.Cascade;
import org.hibernate.annotations.CascadeType;

import javax.persistence.DiscriminatorValue;
import javax.persistence.Entity;
import javax.persistence.FetchType;
import javax.persistence.JoinColumn;
import javax.persistence.OneToOne;
import javax.persistence.Transient;

/**
 * This class represents the AdverseEventMeddraLowLevelTerm domain object associated with the
 * Adverse event report.
 *
 * @author Krikor Krumlian
 */
@Entity
@DiscriminatorValue("meddra")
public class AdverseEventMeddraLowLevelTerm extends AbstractAdverseEventTerm<LowLevelTerm> {

    /* (non-Javadoc)
     * @see gov.nih.nci.cabig.caaers.domain.AbstractAdverseEventTerm#getFullName()
     */
    @Transient
    public String getFullName() {
        if (getTerm() == null)
            return "";
        return getTerm().getFullName();
    }

    /* (non-Javadoc)
     * @see gov.nih.nci.cabig.caaers.domain.AbstractAdverseEventTerm#getUniversalTerm()
     */
    @Transient
    public String getUniversalTerm() {
        if (getTerm() == null) {
            return null;
        } else if (getAdverseEvent() != null && (getAdverseEvent().getDetailsForOther() != null)) {
            StringBuilder sb = new StringBuilder(getTerm().getFullName());
            // strip everything after "Other", if it is in the name
            int otherAt = sb.indexOf("Other");
            if (otherAt >= 0) {
                sb.delete(otherAt + 5, sb.length());
            }
            if (getAdverseEvent().getDetailsForOther() != null)
                sb.append(": ").append(getAdverseEvent().getDetailsForOther());
            return sb.toString();
        } else {
            return getTerm().getFullName();
        }
    }

    /* (non-Javadoc)
     * @see gov.nih.nci.cabig.caaers.domain.AbstractAdverseEventTerm#getTerm()
     */
    @OneToOne
    @JoinColumn(name = "term_id")
    @Cascade(value = { CascadeType.LOCK })
    @Override
    public LowLevelTerm getTerm() {
        return super.getTerm();
    }

    /**
     * Gets the low level term.
     *
     * @return the low level term
     */
    @Transient
    public LowLevelTerm getLowLevelTerm() {
        return super.getTerm();
    }

    /**
     * Sets the low level term.
     *
     * @param lowlevelTerm the new low level term
     */
    @Transient
    public void setLowLevelTerm(LowLevelTerm lowlevelTerm) {
        super.setTerm(lowlevelTerm);
    }

    /* (non-Javadoc)
     * @see gov.nih.nci.cabig.caaers.domain.AbstractAdverseEventTerm#isOtherRequired()
     */
    @Override
    @Transient
    public boolean isOtherRequired() {
        //there is no other specify for MedDRA
        return false;
    }

    /* (non-Javadoc)
     * @see gov.nih.nci.cabig.caaers.domain.AbstractAdverseEventTerm#copy()
     */
    @Override
    public AdverseEventMeddraLowLevelTerm copy() {
        return (AdverseEventMeddraLowLevelTerm) super.copy();
    }

    /* (non-Javadoc)
     * @see gov.nih.nci.cabig.caaers.domain.AbstractAdverseEventTerm#isMedDRA()
     */
    @Override
    @Transient
    public boolean isMedDRA() {
        return true;
    }

    @Override
    @Transient
    public boolean isPositiveAttributionNeeded() {
        return !(getLowLevelTerm() != null
                && ArrayUtils.contains(new String[] { "10042434", "10011912", "10011914", "10042435", "10016479" },
                        getLowLevelTerm().getMeddraCode()));
    }
}