es.uvigo.ei.sing.gc.view.models.committee.summary.SummaryViewModel.java Source code

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Here is the source code for es.uvigo.ei.sing.gc.view.models.committee.summary.SummaryViewModel.java

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/*
   This file is part of GeneCommittee.
    
   GeneCommittee is free software: you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
   the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.
    
   GeneCommittee is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
    
   You should have received a copy of the GNU General Public License
   along with GeneCommittee.  If not, see <http://www.gnu.org/licenses/>.
*/
package es.uvigo.ei.sing.gc.view.models.committee.summary;

import java.util.Collections;
import java.util.LinkedList;
import java.util.List;

import org.hibernate.Session;
import org.hibernate.criterion.Restrictions;
import org.zkoss.bind.annotation.Command;
import org.zkoss.bind.annotation.Init;
import org.zkoss.zk.ui.Executions;
import es.uvigo.ei.sing.gc.utils.HibernateUtil;
import org.zkoss.zul.Messagebox;

import es.uvigo.ei.sing.gc.model.entities.Committee;
import es.uvigo.ei.sing.gc.model.entities.CommitteeStatus;
import es.uvigo.ei.sing.gc.model.entities.DataSetMetaData;
import es.uvigo.ei.sing.gc.model.entities.ExperimentMetaData;
import es.uvigo.ei.sing.gc.model.entities.ExpertResult;
import es.uvigo.ei.sing.gc.model.entities.GeneSelectionMetaData;
import es.uvigo.ei.sing.gc.model.entities.GeneSelectionType;
import es.uvigo.ei.sing.gc.utils.Property;
import es.uvigo.ei.sing.gc.view.models.StatusViewModel;
import es.uvigo.ei.sing.gc.view.models.committee.CommitteeViewModel;

public class SummaryViewModel extends CommitteeViewModel {
    @Init
    @Override
    public void init() {
        super.init();

        StatusViewModel.changeInitialStatus("Check your generated committee");
    }

    public void setCommitteeName(String name) {
        this.getCommittee().setName(name);
        HibernateUtil.currentSession().update(this.getCommittee());
    }

    public String getCommitteeName() {
        return this.getCommittee().getName();
    }

    public List<Property> getProperties() {
        return SummaryViewModel.extractCommitteeProperties(this.getCommittee());
    }

    public static List<Property> extractCommitteeProperties(Committee committee) {
        final List<Property> properties = new LinkedList<Property>();

        final DataSetMetaData dataSet = committee.getDataSet();
        final GeneSelectionMetaData geneSet = committee.getGeneSelection();
        final ExperimentMetaData experiment = committee.getExperiment();

        properties.add(new Property("Data Set"));
        properties.add(Property.create("Name", dataSet.getName()));
        properties.add(Property.create("Conditions", dataSet.getClassNames()));
        properties.add(Property.create("Num. Conditions", dataSet.getNumClasses()));
        properties.add(Property.create("Num. Samples", dataSet.getSamples()));
        properties.add(Property.create("Num. Genes", dataSet.getVariables()));

        properties.add(new Property("Gene Selection"));
        properties.add(Property.create("Name", GeneSelectionType.getTypeForBuilder(geneSet.getBuilderClassName())));
        properties.add(Property.create("Num. Genes", geneSet.getNumGenes()));

        properties.add(new Property("Committee"));
        properties.add(Property.create("Num. Total Experts", experiment.getResults().size()));
        properties.add(Property.create("Num. Selected Experts", experiment.getSelectedCount()));
        boolean first = true;
        final List<ExpertResult> selectedExperts = experiment.getSelectedExperts();
        Collections.sort(selectedExperts, new ExpertResult.ExpertResultMetaDataComparator());

        for (ExpertResult expert : selectedExperts) {
            if (first) {
                properties.add(Property.create("Experts", expert));
                first = false;
            } else {
                properties.add(Property.create("", expert));
            }
        }

        return properties;
    }

    @Command("saveAndFinish")
    public void saveAndFinish() throws Exception {
        final Committee committee = this.getCommittee();

        if (committee.isFinished()) {
            throw new IllegalStateException("Committee is already completed");
        } else {
            final Session session = HibernateUtil.currentSession();

            Committee sameName = (Committee) session.createCriteria(Committee.class).setMaxResults(1)
                    .add(Restrictions.eq("user", committee.getUser()))
                    .add(Restrictions.eq("name", committee.getName()))
                    .add(Restrictions.not(Restrictions.eq("id", committee.getId()))).uniqueResult();

            if (sameName == null) {
                committee.setFinished(true);

                session.persist(committee);

                Executions.sendRedirect("/home.zul");
            } else {
                Messagebox.show(
                        "There is another committee with the same name. Please, change the name in order to continue.",
                        "Invalid Name", Messagebox.OK, Messagebox.ERROR);
            }
        }
    }

    @Override
    public String getCurrentStep() {
        return CommitteeViewModel.SUMMARY_STEP;
    }

    @Override
    public String getPreviousHref() {
        return CommitteeViewModel.EVALUATION_PATH;
    }

    @Override
    protected CommitteeStatus stepStatus() {
        return CommitteeStatus.EXPERTS_SELECTED;
    }
}