edu.wustl.xipHost.avt2ext.RetrieveAIMTest.java Source code

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Here is the source code for edu.wustl.xipHost.avt2ext.RetrieveAIMTest.java

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/*
Copyright (c) 2013, Washington University in St.Louis
All rights reserved.
    
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
    
  http://www.apache.org/licenses/LICENSE-2.0
    
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
*/

package edu.wustl.xipHost.avt2ext;

import static org.junit.Assert.assertEquals;
import java.io.InputStreamReader;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.JAXBElement;
import javax.xml.bind.JAXBException;
import javax.xml.bind.Unmarshaller;
import org.apache.commons.io.IOUtils;
import org.apache.log4j.Logger;
import org.apache.log4j.xml.DOMConfigurator;
import org.dcm4che2.data.Tag;
import org.jdom.Document;
import org.jdom.input.SAXBuilder;
import org.jdom.output.XMLOutputter;
import org.junit.AfterClass;
import org.junit.BeforeClass;
import org.junit.Test;
import com.siemens.scr.avt.ad.annotation.ImageAnnotation;
import com.siemens.scr.avt.ad.api.ADFacade;
import edu.wustl.xipHost.avt2ext.AVTFactory;

/**
 * @author Jaroslaw Krych
 *
 */
public class RetrieveAIMTest {
    final static Logger logger = Logger.getLogger(RetrieveAIMTest.class);
    static ADFacade adService;
    static SAXBuilder builder;
    Document document;
    static XMLOutputter outToXMLFile;
    static JAXBContext jc;
    static Unmarshaller u = null;

    @BeforeClass
    public static void setUp() throws Exception {
        adService = AVTFactory.getADServiceInstance();
        builder = new SAXBuilder();
        outToXMLFile = new XMLOutputter();
        try {
            jc = JAXBContext.newInstance("gme.cacore_cacore._3_2.edu_northwestern_radiology");
            u = jc.createUnmarshaller();
        } catch (JAXBException e) {
            logger.error(e, e);
        }
        DOMConfigurator.configure("log4j.xml");
    }

    @AfterClass
    public static void tearDown() throws Exception {

    }

    //INFO: dataset must be preloaded prior to running these JUnit tests from AD_Preload_JUnit_Tests. Use PreloadDICOM and PreloadAIM utility classes in avt2ext to preload database.
    @Test
    public void testRetrieveAIM_1A() {
        Map<Integer, Object> dicomCriteria = new HashMap<Integer, Object>();
        dicomCriteria.put(Tag.SeriesInstanceUID, "1.3.6.1.4.1.9328.50.1.10697");
        List<ImageAnnotation> imageAnnots = adService.retrieveAnnotations(dicomCriteria, null);
        ImageAnnotation annot = (ImageAnnotation) imageAnnots.get(0);
        //Assert image annotation uniqueIdentifier
        String strXML = annot.getAIM();
        InputStreamReader isr = new InputStreamReader(IOUtils.toInputStream(strXML));
        try {
            JAXBElement<?> obj = (JAXBElement<?>) u.unmarshal(isr);
            gme.cacore_cacore._3_2.edu_northwestern_radiology.ImageAnnotation imageAnnotation = ((gme.cacore_cacore._3_2.edu_northwestern_radiology.ImageAnnotation) obj
                    .getValue());
            String annotID = String.valueOf(imageAnnotation.getUniqueIdentifier());
            //System.out.println(annot.getAIM());
            assertEquals("Wrong annotation retrieved. Expected ID: " + "1.2.288.3.2205383238.1512.1207945935.1"
                    + " but actual: " + annotID, annotID, "1.2.288.3.2205383238.1512.1207945935.1");
        } catch (JAXBException e) {
            logger.error(e, e);
        }
    }

}