edu.umn.msi.tropix.webgui.server.IdentificationJobImpl.java Source code

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/*******************************************************************************
 * Copyright 2009 Regents of the University of Minnesota. All rights
 * reserved.
 * Copyright 2009 Mayo Foundation for Medical Education and Research.
 * All rights reserved.
 *
 * This program is made available under the terms of the Eclipse
 * Public License v1.0 which accompanies this distribution,
 * and is available at http://www.eclipse.org/legal/epl-v10.html
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, EITHER EXPRESS OR
 * IMPLIED INCLUDING, WITHOUT LIMITATION, ANY WARRANTIES OR CONDITIONS
 * OF TITLE, NON-INFRINGEMENT, MERCHANTABILITY OR FITNESS FOR A
 * PARTICULAR PURPOSE.  See the License for the specific language
 * governing permissions and limitations under the License.
 *
 * Contributors:
 * Minnesota Supercomputing Institute - initial API and implementation
 ******************************************************************************/

package edu.umn.msi.tropix.webgui.server;

import java.util.Collection;

import javax.annotation.ManagedBean;
import javax.inject.Inject;

import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import com.google.common.collect.Sets;

import edu.umn.msi.tropix.common.collect.Collections;
import edu.umn.msi.tropix.models.ProteomicsRun;
import edu.umn.msi.tropix.persistence.service.AnalysisService;
import edu.umn.msi.tropix.webgui.server.aop.ServiceMethod;
import edu.umn.msi.tropix.webgui.server.models.BeanSanitizer;
import edu.umn.msi.tropix.webgui.server.models.BeanSanitizerUtils;
import edu.umn.msi.tropix.webgui.server.security.UserSession;
import edu.umn.msi.tropix.webgui.services.protip.IdentificationJob;

@ManagedBean
public class IdentificationJobImpl implements IdentificationJob {
    private final AnalysisService analysisService;
    private final BeanSanitizer beanSanitizer;
    private final UserSession userSession;

    @Inject
    IdentificationJobImpl(final AnalysisService analysisService, final BeanSanitizer beanSanitizer,
            final UserSession userSession) {
        this.analysisService = analysisService;
        this.beanSanitizer = beanSanitizer;
        this.userSession = userSession;
    }

    @ServiceMethod(readOnly = true)
    public Collection<ProteomicsRun> getRuns(final Collection<String> sourceIds) {
        final ProteomicsRun[] runs = analysisService.getRuns(userSession.getGridId(),
                Iterables.toArray(sourceIds, String.class));
        return Sets.newHashSet(Collections.transform(Lists.newArrayList(runs),
                BeanSanitizerUtils.<ProteomicsRun>asFunction(beanSanitizer)));
    }

}