edu.ucla.stat.SOCR.chart.demo.PowerTransformQQNormalPlotChart.java Source code

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Here is the source code for edu.ucla.stat.SOCR.chart.demo.PowerTransformQQNormalPlotChart.java

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package edu.ucla.stat.SOCR.chart.demo;

import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Dimension;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.beans.PropertyChangeListener;
import java.net.MalformedURLException;
import java.util.Observable;
import java.util.Observer;

import javax.swing.AbstractAction;
import javax.swing.Action;
import javax.swing.JButton;
import javax.swing.JLabel;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.JSplitPane;
import javax.swing.JTable;
import javax.swing.JToolBar;

import org.jfree.chart.ChartFactory;
import org.jfree.chart.ChartPanel;
import org.jfree.chart.JFreeChart;
import org.jfree.chart.axis.NumberAxis;
import org.jfree.chart.plot.PlotOrientation;
import org.jfree.chart.plot.XYPlot;
import org.jfree.chart.renderer.xy.XYLineAndShapeRenderer;
import org.jfree.data.xy.IntervalXYDataset;
import org.jfree.data.xy.XYDataset;
import org.jfree.data.xy.XYSeries;
import org.jfree.data.xy.XYSeriesCollection;
import org.jfree.ui.RectangleInsets;

import edu.ucla.stat.SOCR.chart.SuperXYChart_QQ;
import edu.ucla.stat.SOCR.util.EditableHeader;
import edu.ucla.stat.SOCR.util.FloatSlider;

/**
 * A simple demonstration application showing how to create a line chart using
 * data from an {@link XYDataset}.  
 * 
 */
public class PowerTransformQQNormalPlotChart extends SuperXYChart_QQ
        implements PropertyChangeListener, ActionListener, Observer {

    private double power = 1.0;
    protected double[] transformed_x, normalized_x;
    JPanel sliderPanel;
    FloatSlider powerSlider;

    public void init() {

        sliderPanel = new JPanel();
        powerSlider = new FloatSlider("Power", 1.0, -10.0, 10.0);
        powerSlider.setPreferredSize(new Dimension(CHART_SIZE_X / 2 + 150, 80));
        powerSlider.addObserver(this);
        powerSlider.setToolTipText("Slider for adjusting the value of power.");
        sliderPanel.add(this.powerSlider);

        super.init();
        depLabel.setText("Data"); // Y

        toolBar = new JToolBar();
        createActionComponents(toolBar);
        JPanel toolBarContainer = new JPanel();
        toolBarContainer.add(toolBar);

        JSplitPane toolContainer = new JSplitPane(JSplitPane.VERTICAL_SPLIT, toolBarContainer,
                new JScrollPane(sliderPanel));
        toolContainer.setContinuousLayout(true);
        toolContainer.setDividerLocation(0.6);
        this.getContentPane().add(toolContainer, BorderLayout.NORTH);
    }

    protected void createActionComponents(JToolBar toolBar) {
        super.createActionComponents(toolBar);
        JButton button;

        /**************** wiki Tab ****************/
        Action linkAction = new AbstractAction() {
            public void actionPerformed(ActionEvent e) {

                try {
                    parentApplet.getAppletContext().showDocument(new java.net.URL(
                            "http://wiki.stat.ucla.edu/socr/index.php/SOCR_EduMaterials_Activities_PowerTransformFamily_Graphs"),
                            "SOCR: Power Transform Graphing Activity");
                } catch (MalformedURLException Exc) {
                    JOptionPane.showMessageDialog(null, Exc, "MalformedURL Error", JOptionPane.ERROR_MESSAGE);
                    Exc.printStackTrace();
                }

            }
        };

        button = toolBar.add(linkAction);
        button.setText(" WIKI_Activity ");
        button.setToolTipText("Press this Button to go to SOCR_POWER_Activity wiki page");
    }

    /**
    * Creates a sample dataset.
    * 
    * @return a sample dataset.
    */
    protected XYDataset createDataset(boolean isDemo) {
        if (isDemo) {

            row_count = 10;

            raw_y = new String[row_count];

            raw_y[0] = "97";
            raw_y[1] = "98";
            raw_y[2] = "92";
            raw_y[3] = "94";
            raw_y[4] = "93";
            raw_y[5] = "106";
            raw_y[6] = "94";
            raw_y[7] = "109";
            raw_y[8] = "102";
            raw_y[9] = "96";

            reset_PowerSlider();
            cleanup_raw(raw_y, row_count);
            XYDataset dataset = applyPowerTransform(raw_y, row_count);
            return dataset;
        } else
            return super.createDataset(false);

    }

    public void update(Observable arg0, Object arg1) {
        if (this.power != this.powerSlider.getFloatValue()) {
            setPower(this.powerSlider.getFloatValue());
            this.createDataset(isDemo); // update row_count raw_y in case the dataTable is changed
            redoChart();
        }
    }

    public void doChart() {

        if (dataTable.isEditing())
            dataTable.getCellEditor().stopCellEditing();
        if (!hasExample) {
            showMessageDialog(DATA_MISSING_MESSAGE);
            resetChart();
            return;
        }

        dataset = createDataset(false);

        redoChart();
    }

    protected void redoChart() {
        //System.out.println("row_count "+row_count);
        cleanup_raw(raw_y, row_count);
        XYDataset ds = applyPowerTransform(raw_y, row_count);
        setTable(ds);
        //       do the mapping
        addButtonDependent();//Y

        JFreeChart chart = createChart(ds);
        chartPanel = new ChartPanel(chart, false);
        setChart();
    }

    protected void setChart() {
        // update graph

        graphPanel.removeAll();
        graphPanel.add(chartPanel);
        graphPanel.validate();

        // don't get the GRAPH panel to the front
        if (tabbedPanelContainer.getTitleAt(tabbedPanelContainer.getSelectedIndex()) != ALL) {
            //tabbedPanelContainer.setSelectedIndex(tabbedPanelContainer.indexOfComponent(graphPanel));
        } else {
            graphPanel2.removeAll();
            chartPanel.setPreferredSize(new Dimension(CHART_SIZE_X * 2 / 3, CHART_SIZE_Y * 2 / 3));
            graphPanel2.add(chartPanel);
            graphPanel2.validate();
            summaryPanel.validate();
        }
    }

    protected void setTable(XYDataset ds) {

        convertor.data2Table(raw_y, transformed_x, "Data", "Transformed Data", row_count);
        //convertor.dataset2Table(dataset);            
        JTable tempDataTable = convertor.getTable();

        resetTableRows(tempDataTable.getRowCount());
        resetTableColumns(tempDataTable.getColumnCount());

        for (int i = 0; i < tempDataTable.getColumnCount(); i++) {
            columnModel.getColumn(i).setHeaderValue(tempDataTable.getColumnName(i));
            //  System.out.println("updateExample tempDataTable["+i+"] = " +tempDataTable.getColumnName(i));
        }

        columnModel = dataTable.getColumnModel();
        dataTable.setTableHeader(new EditableHeader(columnModel));

        for (int i = 0; i < tempDataTable.getRowCount(); i++)
            for (int j = 0; j < tempDataTable.getColumnCount(); j++) {
                dataTable.setValueAt(tempDataTable.getValueAt(i, j), i, j);
            }

        dataPanel.removeAll();
        JScrollPane dt = new JScrollPane(dataTable);
        dataPanel.add(dt);
        dt.setRowHeaderView(headerTable);
        dataTable.setGridColor(Color.gray);
        dataTable.setShowGrid(true);
        dataTable.doLayout();
        // this is a fix for the BAD SGI Java VM - not up to date as of dec. 22, 2003
        try {
            dataTable.setDragEnabled(true);
        } catch (Exception e) {
        }

        dataPanel.validate();

        // don't bring graph to the front
        if (tabbedPanelContainer.getTitleAt(tabbedPanelContainer.getSelectedIndex()) != ALL) {
            //   tabbedPanelContainer.setSelectedIndex(tabbedPanelContainer.indexOfComponent(graphPanel));
        } else {
            dataPanel2.removeAll();
            dataPanel2.add(new JLabel(" "));
            dataPanel2.add(new JLabel("Data"));
            JScrollPane dt2 = new JScrollPane(dataTable);
            dt2.setPreferredSize(new Dimension(CHART_SIZE_X / 3, CHART_SIZE_Y * 3 / 8));
            dt2.setRowHeaderView(headerTable);
            dataPanel2.add(dt2);
            JScrollPane st = new JScrollPane(summaryPanel);
            st.setPreferredSize(new Dimension(CHART_SIZE_X / 3, CHART_SIZE_Y / 6));
            dataPanel2.add(st);
            st.validate();

            dataPanel2.add(new JLabel(" "));
            dataPanel2.add(new JLabel("Mapping"));
            mapPanel.setPreferredSize(new Dimension(CHART_SIZE_X / 3, CHART_SIZE_Y / 2));
            dataPanel2.add(mapPanel);

            dataPanel2.validate();
        }
    }

    protected XYDataset applyPowerTransform(String[] raw_y, int row_count) {

        //System.out.println("row_count="+row_count);
        XYSeriesCollection dataset = new XYSeriesCollection();

        transformed_x = calculate_power(raw_y, row_count, this.power);
        normalized_x = normalize(raw_y, transformed_x, row_count);
        do_normalQQ(raw_y, row_count);

        XYSeries series1 = new XYSeries("QQ");
        for (int i = 0; i < row_count; i++) {
            //System.out.println("i="+i+" normalQ="+normalQuantiles[i]+" stdRes="+stdResiduals[i]);
            series1.add(normalQuantiles[i], stdResiduals[i]);
        }

        XYSeries series2 = new XYSeries("Reference Line");
        min_x = Math.min(normalQuantiles[0], stdResiduals[0]);
        min_x = min_x - 0.125;
        max_x = Math.max(normalQuantiles[row_count - 1], stdResiduals[row_count - 1]);
        max_x = max_x + 0.125;
        series2.add(min_x, min_x);
        series2.add(max_x, max_x);

        dataset.addSeries(series1);
        dataset.addSeries(series2);

        transformed_x = calculate_power(raw_y, row_count, this.power);
        normalized_x = normalize(raw_y, transformed_x, row_count);

        do_normalQQ(normalized_x, row_count);

        XYSeries series3 = new XYSeries("Transformed Data");
        for (int i = 0; i < row_count; i++) {
            //System.out.println("i="+i+" normalQ="+normalQuantiles[i]+" stdRes="+stdResiduals[i]);
            series3.add(normalQuantiles[i], stdResiduals[i]);
        }

        dataset.addSeries(series3);
        return dataset;
    }

    protected void reset_PowerSlider() {
        power = 1.0;
        powerSlider.setFloatValue(power);
    }

    /**
    * This method sets the Power parameter. 
    * @param p the change event
    */
    public void setPower(double p) {
        power = p;
    }

    /**
    * This method gets the current Power parameter. 
    */
    public double getPower() {
        return power;
    }

    /**
     * Creates a chart.
     * 
     * @param dataset  the data for the chart.
     * 
     * @return a chart.
     */
    protected JFreeChart createChart(XYDataset dataset) {

        // create the chart...
        JFreeChart chart = ChartFactory.createXYLineChart(chartTitle, //"Power Tranfomed Normal Q-Q plot",      // chart title
                domainLabel, // x axis label
                rangeLabel, // y axis label
                dataset, // data
                PlotOrientation.VERTICAL, true, // include legend
                true, // tooltips
                false // urls
        );

        // NOW DO SOME OPTIONAL CUSTOMISATION OF THE CHART...
        chart.setBackgroundPaint(Color.white);

        // get a reference to the plot for further customisation...
        XYPlot plot = (XYPlot) chart.getPlot();
        plot.setBackgroundPaint(Color.white);
        plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));
        plot.setDomainGridlinePaint(Color.lightGray);
        plot.setRangeGridlinePaint(Color.lightGray);

        XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer();
        // renderer.setShapesVisible(true);
        renderer.setBaseShapesFilled(true);
        //  renderer.setLinesVisible(false);
        renderer.setSeriesLinesVisible(1, true);
        renderer.setSeriesShapesVisible(1, false);
        renderer.setSeriesLinesVisible(2, true);
        renderer.setSeriesShapesVisible(2, true);
        renderer.setSeriesLinesVisible(0, false);
        renderer.setSeriesShapesVisible(0, true);

        //renderer.setLegendItemLabelGenerator(new SOCRXYSeriesLabelGenerator());

        // change the auto tick unit selection to integer units only...
        NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis();
        rangeAxis.setAutoRangeIncludesZero(false);
        rangeAxis.setUpperMargin(0);
        rangeAxis.setLowerMargin(0);

        // rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits());
        NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
        domainAxis.setAutoRangeIncludesZero(false);
        domainAxis.setUpperMargin(0);
        domainAxis.setLowerMargin(0);

        // domainAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits());

        // OPTIONAL CUSTOMISATION COMPLETED.
        //setQQSummary(dataset);    // very confusing   
        return chart;

    }

    /**
     * reset dataTable to default (demo data), and refesh chart
     */
    public void resetExample() {

        XYDataset dataset = createDataset(true);

        reset_PowerSlider();

        JFreeChart chart = createChart(dataset);
        chartPanel = new ChartPanel(chart, false);
        setChart();

        hasExample = true;
        setTable(dataset);

        // do the mapping
        setMapping();
        updateStatus(url);
    }
}