Java tutorial
/* * Copyright: (c) 2004-2010 Mayo Foundation for Medical Education and * Research (MFMER). All rights reserved. MAYO, MAYO CLINIC, and the * triple-shield Mayo logo are trademarks and service marks of MFMER. * * Except as contained in the copyright notice above, or as used to identify * MFMER as the author of this software, the trade names, trademarks, service * marks, or product names of the copyright holder shall not be used in * advertising, promotion or otherwise in connection with this software without * prior written authorization of the copyright holder. * * Licensed under the Eclipse Public License, Version 1.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.eclipse.org/legal/epl-v10.html * */ package edu.mayo.informatics.lexgrid.convert.directConversions.protegeOwl; import java.util.Collection; import org.LexGrid.commonTypes.Property; import org.LexGrid.commonTypes.PropertyQualifier; import org.LexGrid.commonTypes.Source; import org.LexGrid.commonTypes.Text; import org.LexGrid.commonTypes.types.PropertyTypes; import org.LexGrid.concepts.Comment; import org.LexGrid.concepts.Definition; import org.LexGrid.concepts.Presentation; import org.LexGrid.relations.AssociationData; import org.LexGrid.relations.AssociationQualification; import org.LexGrid.relations.AssociationSource; import org.LexGrid.relations.AssociationTarget; import org.apache.commons.lang.StringUtils; import edu.mayo.informatics.lexgrid.convert.Conversions.SupportedMappings; import edu.stanford.smi.protegex.owl.model.RDFProperty; public class CreateUtils { // ///////////////////////////////////////////// // // Create and register LexGrid objects ////// // ///////////////////////////////////////////// public static AssociationData createAssociationTextData(String data) { AssociationData lgData = new AssociationData(); lgData.setAssociationDataText(createText(data)); return lgData; } public static AssociationQualification createAssociationQualification(RDFProperty rdfProp, SupportedMappings lgSupportedMappings_) { String brText = rdfProp.getBrowserText(); Collection labels = rdfProp.getLabels(); AssociationQualification lgQual = createAssociationQualification(brText, rdfProp.getURI(), labels.isEmpty() ? brText : labels.iterator().next().toString(), lgSupportedMappings_); return lgQual; } public static AssociationQualification createAssociationQualification(String name, String uri, String descriptiveText, SupportedMappings lgSupportedMappings_) { AssociationQualification lgQual = new AssociationQualification(); lgQual.setAssociationQualifier(name); lgQual.setQualifierText(createText(descriptiveText)); lgSupportedMappings_.registerSupportedAssociationQualifier(name, uri, descriptiveText, false); return lgQual; } public static AssociationSource createAssociationSource(String lgConceptCode, String namespace) { AssociationSource lgSrc = new AssociationSource(); if (StringUtils.isNotBlank(lgConceptCode)) lgSrc.setSourceEntityCode(lgConceptCode); if (StringUtils.isNotBlank(namespace)) lgSrc.setSourceEntityCodeNamespace(namespace); return lgSrc; } public static AssociationTarget createAssociationTarget(String lgConceptCode, String namespace) { AssociationTarget lgTgt = new AssociationTarget(); if (lgConceptCode != null) lgTgt.setTargetEntityCode(lgConceptCode); if (namespace != null) lgTgt.setTargetEntityCodeNamespace(namespace); return lgTgt; } public static Comment createComment(String propID, String propName, String text, SupportedMappings lgSupportedMappings_, String propURI, String lang) { Comment lgComment = new Comment(); lgComment.setPropertyId(propID); lgComment.setPropertyName(propName); lgComment.setValue(createText(text)); lgComment.setLanguage(lang); lgSupportedMappings_.registerSupportedProperty(propName, propURI, propName, PropertyTypes.COMMENT, false); return lgComment; } public static Definition createDefinition(String propID, String propName, String text, Boolean isPreferred, SupportedMappings lgSupportedMappings_, String propURI, String lang) { Definition lgDefn = new Definition(); lgDefn.setPropertyId(propID); lgDefn.setPropertyName(propName); lgDefn.setValue(createText(text)); lgDefn.setLanguage(lang); if (isPreferred != null) lgDefn.setIsPreferred(isPreferred); lgSupportedMappings_.registerSupportedProperty(propName, propURI, propName, PropertyTypes.DEFINITION, false); return lgDefn; } public static Presentation createPresentation(String propID, String propName, String text, Boolean isPreferred, SupportedMappings lgSupportedMappings_, String propURI, String lang) { Presentation lgPres = new Presentation(); lgPres.setPropertyId(propID); lgPres.setPropertyName(propName); lgPres.setValue(createText(text)); lgPres.setLanguage(lang); if (isPreferred != null) lgPres.setIsPreferred(isPreferred); lgSupportedMappings_.registerSupportedProperty(propName, propURI, propName, PropertyTypes.PRESENTATION, false); return lgPres; } public static Property createProperty(String propID, String propName, String text, SupportedMappings lgSupportedMappings_, String propURI, String lang) { Property lgProp = new Property(); lgProp.setPropertyName(propName); lgProp.setPropertyId(propID); lgProp.setValue(createText(text)); lgProp.setLanguage(lang); lgSupportedMappings_.registerSupportedProperty(propName, propURI, propName, PropertyTypes.PROPERTY, false); return lgProp; } public static PropertyQualifier createPropertyQualifier(String tag, String text, SupportedMappings lgSupportedMappings_) { PropertyQualifier lgPropQual = new PropertyQualifier(); lgPropQual.setPropertyQualifierName(tag); lgPropQual.setValue(createText(text)); lgSupportedMappings_.registerSupportedPropertyQualifier(tag, null, tag, false); return lgPropQual; } public static Source createSource(String value, String role, String subref, SupportedMappings lgSupportedMappings_) { Source lgSource = new Source(); lgSource.setContent(value); lgSource.setRole(role); lgSource.setSubRef(subref); if (value != null) lgSupportedMappings_.registerSupportedSource(value, null, value, null, false); if (role != null) lgSupportedMappings_.registerSupportedSourceRole(role, null, role, false); return lgSource; } public static Text createText(String value) { Text lgText = new Text(); lgText.setContent(value); lgText.setDataType(ProtegeOwl2LGConstants.DATATYPE_STRING); return lgText; } }