Java tutorial
// $HeadURL: // svn+ssh://ant4@orchestra.med.harvard.edu/svn/iccb/screensaver/trunk/src/edu/harvard/med/screensaver/ui/libraries/WellVolumeSearchResults.java // $ // $Id$ // // Copyright 2006, 2010, 2011, 2012 by the President and Fellows of Harvard College. // // Screensaver is an open-source project developed by the ICCB-L and NSRB labs // at Harvard Medical School. This software is distributed under the terms of // the GNU General Public License. package edu.harvard.med.screensaver.ui.libraries; import java.util.ArrayList; import java.util.Arrays; import java.util.List; import java.util.Set; import com.google.common.base.Function; import com.google.common.collect.Iterables; import com.google.common.collect.Sets; import org.apache.log4j.Logger; import edu.harvard.med.screensaver.db.GenericEntityDAO; import edu.harvard.med.screensaver.model.Volume; import edu.harvard.med.screensaver.model.libraries.WellVolume; import edu.harvard.med.screensaver.ui.arch.datatable.column.ColumnType; import edu.harvard.med.screensaver.ui.arch.datatable.column.IntegerColumn; import edu.harvard.med.screensaver.ui.arch.datatable.column.SetColumn; import edu.harvard.med.screensaver.ui.arch.datatable.column.TableColumn; import edu.harvard.med.screensaver.ui.arch.datatable.column.TextColumn; import edu.harvard.med.screensaver.ui.arch.datatable.column.VolumeColumn; import edu.harvard.med.screensaver.ui.arch.searchresults.EntityBasedEntitySearchResults; import edu.harvard.med.screensaver.ui.cherrypickrequests.CherryPickRequestViewer; /** * Aggregates WellVolumeAdjustments into WellVolumes, and provides these * WellVolumes as a SearchResult. Underlying data is set via methods * {@link WellCopyVolumeSearchResults}. * * @see WellCopyVolumeSearchResults */ public class WellVolumeSearchResults extends EntityBasedEntitySearchResults<WellVolume, String> { private static Logger log = Logger.getLogger(WellVolumeSearchResults.class); private GenericEntityDAO _dao; private LibraryViewer _libraryViewer; private WellViewer _wellViewer; private CherryPickRequestViewer _cherryPickRequestViewer; //private TextColumn<Well> _maxRemainingVolumeColumn; /** * @motivation for CGLIB2 */ protected WellVolumeSearchResults() { } public WellVolumeSearchResults(GenericEntityDAO dao, LibraryViewer libraryViewer, WellViewer wellViewer, CherryPickRequestViewer cherryPickRequestViewer) { _dao = dao; _libraryViewer = libraryViewer; _wellViewer = wellViewer; _cherryPickRequestViewer = cherryPickRequestViewer; } @Override protected List<? extends TableColumn<WellVolume, ?>> buildColumns() { List<TableColumn<WellVolume, ?>> columns = new ArrayList<TableColumn<WellVolume, ?>>(); columns.add( new TextColumn<WellVolume>("Library", "The library containing the well", TableColumn.UNGROUPED) { @Override public String getCellValue(WellVolume wellVolume) { return wellVolume.getWell().getLibrary().getLibraryName(); } @Override public boolean isCommandLink() { return true; } @Override public Object cellAction(WellVolume wellVolume) { return _libraryViewer.viewEntity(wellVolume.getWell().getLibrary()); } }); columns.add(new IntegerColumn<WellVolume>("Plate", "The number of the plate the well is located on", TableColumn.UNGROUPED) { @Override public Integer getCellValue(WellVolume wellVolume) { return wellVolume.getWell().getPlateNumber(); } }); columns.add(new TextColumn<WellVolume>("Well", "The plate coordinates of the well", TableColumn.UNGROUPED) { @Override public String getCellValue(WellVolume wellVolume) { return wellVolume.getWell().getWellName(); } @Override public boolean isCommandLink() { return true; } @Override public Object cellAction(WellVolume wellVolume) { return _wellViewer.viewEntity(wellVolume.getWell()); } }); columns.add(new SetColumn<WellVolume, String>("Copies", "The copies of this well", TableColumn.UNGROUPED, ColumnType.TEXT_SET) { @Override public Set<String> getCellValue(WellVolume wellVolume) { if (wellVolume.getActiveWellInfo().isEmpty()) { return Sets.newTreeSet(Arrays.asList(new String[] { "[no active copies]" })); } return Sets.newTreeSet(wellVolume.getActiveWellInfo().getCopiesList()); } }); columns.add(new VolumeColumn<WellVolume>("Total Initial Copy Volume", "The sum of initial volumes from all copies of this well", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { if (wellVolume.getActiveWellInfo().isEmpty()) return null; return wellVolume.getActiveWellInfo().getTotalInitialVolume(); } }); columns.add(new VolumeColumn<WellVolume>("Consumed Volume", "The cumulative volume already used from this well, across all copies", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { if (wellVolume.getActiveWellInfo().isEmpty()) return null; return wellVolume.getActiveWellInfo().getConsumedVolume(); } }); columns.add(new VolumeColumn<WellVolume>("Max Remaining Volume", "The maximum remaining volume of this well, across all copies", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { if (wellVolume.getActiveWellInfo().isEmpty()) return null; return wellVolume.getActiveWellInfo().getMaxWellCopyVolume().getRemainingVolume(); } }); columns.add(new TextColumn<WellVolume>("Max Remaining Volume Copy", "The copy with the maximum remaining volume of this well", TableColumn.UNGROUPED) { @Override public String getCellValue(WellVolume wellVolume) { if (wellVolume.getActiveWellInfo().isEmpty()) return null; return wellVolume.getActiveWellInfo().getMaxWellCopyVolume().getCopy().getName(); } }); columns.add(new VolumeColumn<WellVolume>("Min Remaining Volume", "The minimum remaining volume of this well, across all copies", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { if (wellVolume.getActiveWellInfo().isEmpty()) return null; return wellVolume.getActiveWellInfo().getMinWellCopyVolume().getRemainingVolume(); } }); columns.add(new TextColumn<WellVolume>("Min Remaining Volume Copy", "The copy with the minimum remaining volume of this well", TableColumn.UNGROUPED) { @Override public String getCellValue(WellVolume wellVolume) { if (wellVolume.getActiveWellInfo().isEmpty()) return null; return wellVolume.getActiveWellInfo().getMinWellCopyVolume().getCopy().getName(); } }); // Retired column info (hidden by default) // TableColumn<WellVolume, ?> c = new SetColumn<WellVolume, String>("Copies (Retired)", "The retired copies of this well", TableColumn.UNGROUPED, ColumnType.TEXT_SET) { @Override public Set<String> getCellValue(WellVolume wellVolume) { return Sets.newTreeSet(wellVolume.getRetiredWellInfo().getCopiesList()); } }; c.setVisible(false); columns.add(c); c = new VolumeColumn<WellVolume>("Total Initial Copy Volume (Retired)", "The sum of initial volumes from all copies of this well", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { return wellVolume.getRetiredWellInfo().getTotalInitialVolume(); } }; c.setVisible(false); columns.add(c); c = new VolumeColumn<WellVolume>("Consumed Volume (Retired)", "The cumulative volume already used from this well, across all copies", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { return wellVolume.getRetiredWellInfo().getConsumedVolume(); } }; c.setVisible(false); columns.add(c); c = new VolumeColumn<WellVolume>("Max Remaining Volume (Retired)", "The maximum remaining volume of this well, across all copies", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { return wellVolume.getRetiredWellInfo().getMaxWellCopyVolume().getRemainingVolume(); } }; c.setVisible(false); columns.add(c); c = new TextColumn<WellVolume>("Max Remaining Volume Copy (Retired)", "The copy with the maximum remaining volume of this well", TableColumn.UNGROUPED) { @Override public String getCellValue(WellVolume wellVolume) { return wellVolume.getRetiredWellInfo().getMaxWellCopyVolume().getCopy().getName(); } }; c.setVisible(false); columns.add(c); c = new VolumeColumn<WellVolume>("Min Remaining Volume (Retired)", "The minimum remaining volume of this well, across all copies", TableColumn.UNGROUPED) { @Override public Volume getCellValue(WellVolume wellVolume) { return wellVolume.getRetiredWellInfo().getMinWellCopyVolume().getRemainingVolume(); } }; c.setVisible(false); columns.add(c); c = new TextColumn<WellVolume>("Min Remaining Volume Copy (Retired)", "The copy with the minimum remaining volume of this well", TableColumn.UNGROUPED) { @Override public String getCellValue(WellVolume wellVolume) { return wellVolume.getRetiredWellInfo().getMinWellCopyVolume().getCopy().getName(); } }; c.setVisible(false); columns.add(c); // done - retired hidden columns - // columns.add(new IntegerColumn<WellVolume>("Withdrawals/Adjustments", "The number of withdrawals and administrative adjustments made from this well, across all copies", TableColumn.UNGROUPED) { @Override public Integer getCellValue(WellVolume wellVolume) { return wellVolume.getWellVolumeAdjustmentCount(); } @Override public boolean isCommandLink() { return getRowData().getWellVolumeAdjustmentCount() > 0; } @Override public Object cellAction(WellVolume wellVolume) { return null; // return showRowDetail(); } }); // TableColumnManager<Well> columnManager = getColumnManager(); // columnManager.addCompoundSortColumns(columnManager.getColumn("Library"), // columnManager.getColumn("Plate"), columnManager.getColumn("Well")); // columnManager.addCompoundSortColumns(columnManager.getColumn("Plate"), // columnManager.getColumn("Well")); // columnManager.addCompoundSortColumns(columnManager.getColumn("Well"), // columnManager.getColumn("Plate")); // columnManager.addCompoundSortColumns(columnManager.getColumn("Copies"), // columnManager.getColumn("Plate"), columnManager.getColumn("Well"), // columnManager.getColumn("Copies")); // columnManager.addCompoundSortColumns(columnManager.getColumn("Initial // Volume"), columnManager.getColumn("Plate"), columnManager.getColumn("Well"), // columnManager.getColumn("Copies")); // columnManager.addCompoundSortColumns(columnManager.getColumn("Consumed // Volume"), columnManager.getColumn("Plate"), columnManager.getColumn("Well"), // columnManager.getColumn("Copies")); // columnManager.addCompoundSortColumns(columnManager.getColumn("Max Remaining // Volume"), columnManager.getColumn("Plate"), columnManager.getColumn("Well"), // columnManager.getColumn("Copies")); // columnManager.addCompoundSortColumns(columnManager.getColumn("Min Remaining // Volume"), columnManager.getColumn("Plate"), columnManager.getColumn("Well"), // columnManager.getColumn("Copies")); return columns; } @Override public void searchAll() { // TODO Auto-generated method stub } // @Override // protected void makeRowDetail(WellVolume wv) // { // List<WellVolumeAdjustment> wvas = new // ArrayList<WellVolumeAdjustment>(wv.getWellVolumeAdjustments().size()); // for (WellVolumeAdjustment wva : wv.getWellVolumeAdjustments()) { // WellVolumeAdjustment wva2 = _dao.reloadEntity(wva, // true, // "well", // "copy", // "labCherryPick.wellVolumeAdjustments", // "labCherryPick.cherryPickRequest", // "labCherryPick.assayPlate.cherryPickLiquidTransfer", // "wellVolumeCorrectionActivity.performedBy"); // wvas.add(wva2); // } // getRowDetail().setContents(wvas); // // } }