edu.harvard.i2b2.eclipse.plugins.analysis.ontologyMessaging.OntologyResponseData.java Source code

Introduction

Here is the source code for edu.harvard.i2b2.eclipse.plugins.analysis.ontologyMessaging.OntologyResponseData.java

Source

/*
 * Copyright (c) 2006-2015 Massachusetts General Hospital 
 * All rights reserved. This program and the accompanying materials 
 * are made available under the terms of the i2b2 Software License v2.1 
 * which accompanies this distribution. 
 * 
 * Contributors:
 *       Raj Kuttan
 *       Lori Phillips
 *       Wensong Pan (ported it here from ontology plug-in)
 */

package edu.harvard.i2b2.eclipse.plugins.analysis.ontologyMessaging;

import java.io.StringWriter;
import javax.xml.bind.JAXBElement;

import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

import edu.harvard.i2b2.analysis.datavo.AnalysisJAXBUtil;
import edu.harvard.i2b2.common.util.jaxb.JAXBUnWrapHelper;
import edu.harvard.i2b2.common.util.jaxb.JAXBUtilException;
import edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.BodyType;
import edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ResponseHeaderType;
import edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ResponseMessageType;
import edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.StatusType;
import edu.harvard.i2b2.crcxmljaxb.datavo.vdo.ConceptType;
import edu.harvard.i2b2.crcxmljaxb.datavo.vdo.ConceptsType;

abstract public class OntologyResponseData {

    public static final String THIS_CLASS_NAME = OntologyResponseData.class.getName();
    private Log log = LogFactory.getLog(THIS_CLASS_NAME);
    private ResponseMessageType respMessageType = null;

    public OntologyResponseData() {
    }

    public StatusType processResult(String response) {
        StatusType status = null;
        try {
            JAXBElement jaxbElement = AnalysisJAXBUtil.getJAXBUtil().unMashallFromString(response);
            respMessageType = (ResponseMessageType) jaxbElement.getValue();

            // Get response message status 
            ResponseHeaderType responseHeader = respMessageType.getResponseHeader();
            status = responseHeader.getResultStatus().getStatus();
            String procStatus = status.getType();
            String procMessage = status.getValue();

            if (procStatus.equals("ERROR")) {
                log.error("Error reported by Ont web Service " + procMessage);
            } else if (procStatus.equals("WARNING")) {
                log.error("Warning reported by Ont web Service" + procMessage);
            }

        } catch (JAXBUtilException e) {
            log.error(e.getMessage());
        }
        return status;
    }

    public ConceptsType doReadConcepts() {
        ConceptsType concepts = null;
        try {
            BodyType bodyType = respMessageType.getMessageBody();
            JAXBUnWrapHelper helper = new JAXBUnWrapHelper();
            if (bodyType != null)
                concepts = (ConceptsType) helper.getObjectByClass(bodyType.getAny(), ConceptsType.class);
        } catch (JAXBUtilException e) {
            log.error(e.getMessage());
            ;
        }
        return concepts;
    }

    public String getXMLString(ConceptType concept) throws Exception {
        StringWriter strWriter = new StringWriter();
        try {
            AnalysisJAXBUtil.getJAXBUtil().marshaller(concept, strWriter);
        } catch (JAXBUtilException e) {
            log.error("Error marshalling Ont concept");
            throw new JAXBUtilException(e.getMessage(), e);
        }
        return strWriter.toString();
    }
}