Java tutorial
/* * Copyright (c) 2006-2015 Massachusetts General Hospital * All rights reserved. This program and the accompanying materials * are made available under the terms of the i2b2 Software License v2.1 * which accompanies this distribution. * * Contributors: * */ package edu.harvard.i2b2.eclipse.plugins.adminTool.utils; import java.io.BufferedReader; import java.io.FileReader; import java.io.StringReader; import javax.xml.bind.JAXBElement; import javax.xml.stream.FactoryConfigurationError; import javax.xml.stream.XMLInputFactory; import javax.xml.stream.XMLStreamReader; import org.apache.axiom.om.OMAbstractFactory; import org.apache.axiom.om.OMElement; import org.apache.axiom.om.OMNamespace; import org.apache.axiom.om.impl.builder.StAXOMBuilder; import org.apache.axiom.soap.SOAPEnvelope; import org.apache.axiom.soap.SOAPFactory; import org.apache.axis2.AxisFault; import org.apache.axis2.Constants; import org.apache.axis2.addressing.EndpointReference; import org.apache.axis2.client.OperationClient; import org.apache.axis2.client.Options; import org.apache.axis2.client.ServiceClient; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.apache.axis2.transport.http.HTTPConstants; import org.apache.axis2.context.MessageContext; import edu.harvard.i2b2.common.util.jaxb.JAXBUnWrapHelper; import edu.harvard.i2b2.common.util.jaxb.JAXBUtil; import edu.harvard.i2b2.eclipse.UserInfoBean; //import edu.harvard.i2b2.previousquery.dataModel.Messages; import edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.BodyType; //import edu.harvard.i2b2.crcxmljaxb.datavo.pm.PasswordType; import edu.harvard.i2b2.crcxmljaxb.datavo.pm.ConfigureType; import edu.harvard.i2b2.crcxmljaxb.datavo.pm.ParamType; //import edu.harvard.i2b2.crcxmljaxb.datavo.pm.RolesType; import edu.harvard.i2b2.crcxmljaxb.datavo.pm.UserType; import edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.PasswordType; import edu.harvard.i2b2.crcxmljaxb.datavo.pm.RoleType; //import edu.harvard.i2b2.pm.datavo.pm.ResponseType; import edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message.ResponseMessageType; //import edu.harvard.i2b2.crcxmljaxb.datavo.pm.GetUserConfigurationType; //import edu.harvard.i2b2.common.pm.UserInfoBean; public class PmServiceController { private static Log log = LogFactory.getLog(PmServiceController.class.getName()); private String msg; // class to hold userInfo public UserInfoBean userInfoBean; // constructor public PmServiceController() { // class instance to hold user session variables userInfoBean = UserInfoBean.getInstance(); } /** * Function to convert pm request to OMElement * * @param requestVdo String request to send to pm web service * @return An OMElement containing the pm web service request */ public static OMElement getPmPayLoad(String requestVdo) throws Exception { OMElement method = null; try { StringReader strReader = new StringReader(requestVdo); XMLInputFactory xif = XMLInputFactory.newInstance(); XMLStreamReader reader = xif.createXMLStreamReader(strReader); StAXOMBuilder builder = new StAXOMBuilder(reader); method = builder.getDocumentElement(); /* OMFactory fac = OMAbstractFactory.getOMFactory(); OMNamespace omNs = fac.createOMNamespace("http://www.i2b2.org/xsd/hive/msg", "i2b2"); method = fac.createOMElement("request", omNs); StringReader strReader = new StringReader(requestVdo); XMLInputFactory xif = XMLInputFactory.newInstance(); XMLStreamReader reader = xif.createXMLStreamReader(strReader); StAXOMBuilder builder = new StAXOMBuilder(reader); //method = builder.getDocumentElement(); OMElement lineItem = builder.getDocumentElement(); method.addChild(lineItem); */ } catch (FactoryConfigurationError e) { // TODO Auto-generated catch block e.printStackTrace(); log.error(e.getMessage()); throw new Exception(e); } return method; } /** * Function to send getUserInfo request to PM web service * * @param userid * @param password * @param projectID * @param project * @param demo Flag to indicate if we are in demo mode * @return A String containing the PM web service response */ public String getUserInfo(String userid, PasswordType password, String projectURL, String project, boolean demo, String pid) throws Exception { String response = null; try { GetUseridsRequestMessage reqMsg = new GetUseridsRequestMessage(userid, password, project); RoleType userConfig = new RoleType(); //userConfig.getProject().add(project); userConfig.setProjectId(pid); String getUserInfoRequestString = null; if (demo) { setUserInfo(getPMDemoString()); System.setProperty("user", UserInfoBean.getInstance().getUserName()); System.setProperty("pass", UserInfoBean.getInstance().getUserPassword()); } else { getUserInfoRequestString = reqMsg.doBuildXML(userConfig); MessageUtil.getInstance() .setRequest("URL: " + projectURL + "getServices" + "\n" + getUserInfoRequestString); //log.info("PM request: /n"+getUserInfoRequestString); if (System.getProperty("webServiceMethod").equals("SOAP")) { response = sendSOAP(new EndpointReference(projectURL), getUserInfoRequestString, "http://rpdr.partners.org/GetUserConfiguration", "GetUserConfiguration"); //$NON-NLS-1$ //$NON-NLS-2$ } else { response = sendREST(new EndpointReference(projectURL + "getServices"), getUserInfoRequestString); } if (response == null) { log.info("no pm response received"); return "error"; } MessageUtil.getInstance().setResponse("URL: " + projectURL + "getServices" + "\n" + response); } } catch (AxisFault e) { log.error(e.getMessage()); setMsg(Messages.getString("LoginHelper.PMUnavailable")); } catch (Exception e) { log.error(e.getMessage()); setMsg(e.getMessage()); } return response; } /** * Function to send getUserInfo request to PM web service * * @param userid * @param password * @param projectID * @param project * @param demo Flag to indicate if we are in demo mode * @return A String containing the PM web service response */ @SuppressWarnings("rawtypes") public String setUserPassword(String userid, PasswordType password, String projectURL, String domain, String newPassword, String username) throws Exception { String response = null; try { ////////////// GetUserRequestMessage reqMsg1 = new GetUserRequestMessage(userid, password, domain); //RoleType userConfig = new RoleType(); //userConfig.getProject().add(project); //userConfig.setProjectId(pid); String requestString = null; requestString = reqMsg1.doBuildXML(username); MessageUtil.getInstance().setRequest("URL: " + projectURL + "getServices" + "\n" + requestString); //log.info("PM request: /n"+getUserInfoRequestString); if (System.getProperty("webServiceMethod").equals("SOAP")) { response = sendSOAP(new EndpointReference(projectURL), requestString, "http://rpdr.partners.org/GetUserConfiguration", "GetUserConfiguration"); //$NON-NLS-1$ //$NON-NLS-2$ } else { response = sendREST(new EndpointReference(projectURL + "getServices"), requestString); //$NON-NLS-1$ } if (response == null) { log.info("no pm response received"); return "error"; } MessageUtil.getInstance().setResponse("URL: " + projectURL + "getServices" + "\n" + response); JAXBUtil jaxbUtil = new JAXBUtil(new String[] { "edu.harvard.i2b2.crcxmljaxb.datavo.pm", "edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message" }); JAXBElement jaxbElement = jaxbUtil.unMashallFromString(response); ResponseMessageType responseMessageType = (ResponseMessageType) jaxbElement.getValue(); String procStatus = responseMessageType.getResponseHeader().getResultStatus().getStatus().getType(); //String procMessage = responseMessageType.getResponseHeader().getResultStatus().getStatus().getValue(); //String serverVersion = responseMessageType.getMessageHeader() //.getSendingApplication().getApplicationVersion(); //System.setProperty("serverVersion", serverVersion); String fullname = null; boolean isadmin = false; if (procStatus.equals("ERROR")) { //setMsg(procMessage); } else if (procStatus.equals("WARNING")) { //setMsg(procMessage); } else { BodyType bodyType = responseMessageType.getMessageBody(); JAXBUnWrapHelper helper = new JAXBUnWrapHelper(); UserType userType = (UserType) helper.getObjectByClass(bodyType.getAny(), UserType.class); fullname = userType.getFullName(); isadmin = userType.isIsAdmin(); } //////////////// SetUserPasswordRequestMessage reqMsg = new SetUserPasswordRequestMessage(userid, password, domain); //RoleType userConfig = new RoleType(); //userConfig.getProject().add(project); //userConfig.setProjectId(pid); requestString = null; UserType user = new UserType(); user.setUserName(username); edu.harvard.i2b2.crcxmljaxb.datavo.pm.PasswordType newPasswordType = new edu.harvard.i2b2.crcxmljaxb.datavo.pm.PasswordType(); newPasswordType.setValue(newPassword); user.setPassword(newPasswordType); user.setDomain(domain); user.setIsAdmin(isadmin); if (fullname != null) { user.setFullName(fullname); } else { user.setFullName("i2b2 User");//UserInfoBean.getInstance().getUserFullName()); } requestString = reqMsg.doBuildXML(user); MessageUtil.getInstance().setRequest("URL: " + projectURL + "getServices" + "\n" + requestString); //log.info("PM request: /n"+getUserInfoRequestString); if (System.getProperty("webServiceMethod").equals("SOAP")) { response = sendSOAP(new EndpointReference(projectURL), requestString, "http://rpdr.partners.org/GetUserConfiguration", "GetUserConfiguration"); //$NON-NLS-1$ //$NON-NLS-2$ } else { response = sendREST(new EndpointReference(projectURL + "getServices"), requestString); //$NON-NLS-1$ } if (response == null) { log.info("no pm response received"); return "error"; } MessageUtil.getInstance().setResponse("URL: " + projectURL + "getServices" + "\n" + response); } catch (AxisFault e) { log.error(e.getMessage()); setMsg(Messages.getString("LoginHelper.PMUnavailable")); } catch (Exception e) { log.error(e.getMessage()); setMsg(e.getMessage()); } return response; } /** * Function to send getUserInfo request to PM web service * * @param userid * @param password * @param projectID * @param project * @param demo Flag to indicate if we are in demo mode * @return A String containing the PM web service response */ @SuppressWarnings("rawtypes") public String setUserPassword(String userid, PasswordType password, String projectURL, String domain, String newPassword) throws Exception { String response = null; try { ////////////// /*GetUserRequestMessage reqMsg1 = new GetUserRequestMessage(userid, password, domain); //RoleType userConfig = new RoleType(); //userConfig.getProject().add(project); //userConfig.setProjectId(pid); String requestString = null; requestString = reqMsg1.doBuildXML(username); MessageUtil.getInstance().setRequest( "URL: " + projectURL + "getServices" + "\n" + requestString); //log.info("PM request: /n"+getUserInfoRequestString); if(System.getProperty("webServiceMethod").equals("SOAP")) { response = sendSOAP(new EndpointReference(projectURL), requestString, "http://rpdr.partners.org/GetUserConfiguration", "GetUserConfiguration"); //$NON-NLS-1$ //$NON-NLS-2$ } else { response = sendREST(new EndpointReference(projectURL + "getServices"), requestString); //$NON-NLS-1$ } if(response == null) { log.info("no pm response received"); return "error"; } MessageUtil.getInstance().setResponse( "URL: " + projectURL + "getServices" + "\n" + response); JAXBUtil jaxbUtil = new JAXBUtil(new String[] { "edu.harvard.i2b2.crcxmljaxb.datavo.pm", "edu.harvard.i2b2.crcxmljaxb.datavo.i2b2message" }); JAXBElement jaxbElement = jaxbUtil.unMashallFromString(response); ResponseMessageType responseMessageType = (ResponseMessageType) jaxbElement.getValue(); String procStatus = responseMessageType.getResponseHeader().getResultStatus().getStatus().getType(); //String procMessage = responseMessageType.getResponseHeader().getResultStatus().getStatus().getValue(); //String serverVersion = responseMessageType.getMessageHeader() //.getSendingApplication().getApplicationVersion(); //System.setProperty("serverVersion", serverVersion); String fullname = null; boolean isadmin = false; if(procStatus.equals("ERROR")){ //setMsg(procMessage); } else if(procStatus.equals("WARNING")){ //setMsg(procMessage); } else { BodyType bodyType = responseMessageType.getMessageBody(); JAXBUnWrapHelper helper = new JAXBUnWrapHelper(); UserType userType = (UserType)helper.getObjectByClass(bodyType.getAny(), UserType.class); fullname = userType.getFullName(); isadmin = userType.isIsAdmin(); }*/ //////////////// SetUserPasswordRequestMessage reqMsg = new SetUserPasswordRequestMessage(userid, password, domain); //RoleType userConfig = new RoleType(); //userConfig.getProject().add(project); //userConfig.setProjectId(pid); String requestString = null; /*UserType user = new UserType(); user.setUserName(username); edu.harvard.i2b2.crcxmljaxb.datavo.pm.PasswordType newPasswordType = new edu.harvard.i2b2.crcxmljaxb.datavo.pm.PasswordType(); newPasswordType.setValue(newPassword); user.setPassword(newPasswordType); user.setDomain(domain); user.setIsAdmin(isadmin); if(fullname != null) { user.setFullName(fullname); } else { user.setFullName("i2b2 User");//UserInfoBean.getInstance().getUserFullName()); }*/ requestString = reqMsg.doBuildXML(newPassword); MessageUtil.getInstance().setRequest("URL: " + projectURL + "getServices" + "\n" + requestString); //log.info("PM request: /n"+getUserInfoRequestString); if (System.getProperty("webServiceMethod").equals("SOAP")) { response = sendSOAP(new EndpointReference(projectURL), requestString, "http://rpdr.partners.org/GetUserConfiguration", "GetUserConfiguration"); //$NON-NLS-1$ //$NON-NLS-2$ } else { response = sendREST(new EndpointReference(projectURL + "getServices"), requestString); //$NON-NLS-1$ } if (response == null) { log.info("no pm response received"); return "error"; } MessageUtil.getInstance().setResponse("URL: " + projectURL + "getServices" + "\n" + response); } catch (AxisFault e) { log.error(e.getMessage()); setMsg(Messages.getString("LoginHelper.PMUnavailable")); } catch (Exception e) { log.error(e.getMessage()); setMsg(e.getMessage()); } return response; } public static String sendREST(EndpointReference restEPR, String requestString) throws Exception { OMElement getPM = getPmPayLoad(requestString); Options options = new Options(); log.debug(restEPR.toString()); options.setTo(restEPR); options.setTransportInProtocol(Constants.TRANSPORT_HTTP); options.setProperty(Constants.Configuration.ENABLE_REST, Constants.VALUE_TRUE); options.setProperty(HTTPConstants.SO_TIMEOUT, new Integer(125000)); options.setProperty(HTTPConstants.CONNECTION_TIMEOUT, new Integer(125000)); ServiceClient sender = PmServiceClient.getServiceClient(); sender.setOptions(options); OMElement result = sender.sendReceive(getPM); //String response = result.getFirstElement().toString(); //return response; return result.toString(); } public static String sendSOAP(EndpointReference soapEPR, String requestString, String action, String operation) throws Exception { ServiceClient sender = PmServiceClient.getServiceClient(); OperationClient operationClient = sender.createClient(ServiceClient.ANON_OUT_IN_OP); // creating message context MessageContext outMsgCtx = new MessageContext(); // assigning message context's option object into instance variable Options opts = outMsgCtx.getOptions(); // setting properties into option log.debug(soapEPR); opts.setTo(soapEPR); opts.setAction(action); opts.setTimeOutInMilliSeconds(180000); log.debug(requestString); SOAPEnvelope envelope = null; try { SOAPFactory fac = OMAbstractFactory.getSOAP11Factory(); envelope = fac.getDefaultEnvelope(); OMNamespace omNs = fac.createOMNamespace("http://rpdr.partners.org/", "rpdr"); // creating the SOAP payload OMElement method = fac.createOMElement(operation, omNs); OMElement value = fac.createOMElement("RequestXmlString", omNs); value.setText(requestString); method.addChild(value); envelope.getBody().addChild(method); } catch (FactoryConfigurationError e) { log.error(e.getMessage()); throw new Exception(e); } outMsgCtx.setEnvelope(envelope); operationClient.addMessageContext(outMsgCtx); operationClient.execute(true); MessageContext inMsgtCtx = operationClient.getMessageContext("In"); SOAPEnvelope responseEnv = inMsgtCtx.getEnvelope(); OMElement soapResponse = responseEnv.getBody().getFirstElement(); // System.out.println("Sresponse: "+ soapResponse.toString()); OMElement soapResult = soapResponse.getFirstElement(); // System.out.println("Sresult: "+ soapResult.toString()); String i2b2Response = soapResult.getText(); log.debug(i2b2Response); return i2b2Response; } @SuppressWarnings("rawtypes") public void setUserInfo(String responseXML) throws Exception { //log.info("PM response message: /n"+responseXML); UserInfoBean.pmResponse(responseXML); JAXBUtil jaxbUtil = new JAXBUtil(new String[] { "edu.harvard.i2b2.pm.datavo.pm", //$NON-NLS-1$ "edu.harvard.i2b2.pm.datavo.i2b2message" //$NON-NLS-1$ }); JAXBElement jaxbElement = jaxbUtil.unMashallFromString(responseXML); ResponseMessageType responseMessageType = (ResponseMessageType) jaxbElement.getValue(); String procStatus = responseMessageType.getResponseHeader().getResultStatus().getStatus().getType(); String procMessage = responseMessageType.getResponseHeader().getResultStatus().getStatus().getValue(); //String serverVersion = responseMessageType.getMessageHeader() //.getSendingApplication().getApplicationVersion(); //System.setProperty("serverVersion", serverVersion); if (procStatus.equals("ERROR")) { //$NON-NLS-1$ setMsg(procMessage); } else if (procStatus.equals("WARNING")) { //$NON-NLS-1$ setMsg(procMessage); } else { BodyType bodyType = responseMessageType.getMessageBody(); JAXBUnWrapHelper helper = new JAXBUnWrapHelper(); ConfigureType response = (ConfigureType) helper.getObjectByClass(bodyType.getAny(), ConfigureType.class); userInfoBean.setEnvironment(response.getEnvironment()); userInfoBean.setUserName(response.getUser().getUserName()); userInfoBean.setUserFullName(response.getUser().getFullName()); //userInfoBean.setUserPassword(response.getUser().getPassword()); userInfoBean.setUserKey(response.getUser().getKey()); userInfoBean.setUserDomain(response.getUser().getDomain()); userInfoBean.setHelpURL(response.getHelpURL()); //Save Global variables in properties if (response.getGlobalData() != null) { for (ParamType param : response.getGlobalData().getParam()) userInfoBean.setGlobals(param.getName(), param.getValue()); } //Save projects if (response.getUser().getProject() != null) //userInfoBean.setProjects( response.getUser().getProject()); //Save Cell if (response.getCellDatas() != null) { } //userInfoBean.setCellDatas(response.getCellDatas()); } } /** * Test code to generate a PM requestPdo String for a sample PM report * called by main below * * @return A String containing the sample PM report */ public static String getPMDemoString() throws Exception { BufferedReader bufRead = new BufferedReader(new FileReader("i2b2workbench.xml")); //$NON-NLS-1$ StringBuffer queryStr = new StringBuffer(); String line = null; while ((line = bufRead.readLine()) != null) { queryStr.append(line + "\n"); //$NON-NLS-1$ } bufRead.close(); return queryStr.toString(); } public String getMsg() { return msg; } public void setMsg(String msg) { this.msg = msg; } }