edu.berkeley.compbio.ncbitaxonomy.NcbiTaxonomyDbContextFactory.java Source code

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Here is the source code for edu.berkeley.compbio.ncbitaxonomy.NcbiTaxonomyDbContextFactory.java

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/*
 * Copyright (c) 2008-2013  David Soergel  <dev@davidsoergel.com>
 * Licensed under the Apache License, Version 2.0
 * http://www.apache.org/licenses/LICENSE-2.0
 */

package edu.berkeley.compbio.ncbitaxonomy;

import org.apache.log4j.Logger;
import org.springframework.beans.factory.xml.XmlBeanDefinitionReader;
import org.springframework.context.ApplicationContext;
import org.springframework.context.support.GenericApplicationContext;
import org.springframework.core.io.ClassPathResource;

import java.io.IOException;

/**
 * @author <a href="mailto:dev@davidsoergel.com">David Soergel</a>
 * @version $Id$
 */
public class NcbiTaxonomyDbContextFactory extends GenericApplicationContext {
    private static final Logger logger = Logger.getLogger(NcbiTaxonomyDbContextFactory.class);

    public static ApplicationContext makeNcbiTaxonomyDbContext() //String dbName)
            throws IOException

    {
        /*
        File propsFile = PropertiesUtils
        .findPropertiesFile("NCBI_TAXONOMY_PROPERTIES", ".ncbitaxonomy", "ncbi_taxonomy.properties");
        EnvironmentUtils.init(propsFile);
            
        logger.debug("Using properties file: " + propsFile);
        Properties p = new Properties();
        FileInputStream is = null;
        try
           {
           is = new FileInputStream(propsFile);
           p.load(is);
           }
        finally
           {
           is.close();
           }
        //String dbName = (String) p.get("default");
            
        Map<String, Properties> databases = PropertiesUtils.splitPeriodDelimitedProperties(p);
            
        */
        GenericApplicationContext ctx = new GenericApplicationContext();
        XmlBeanDefinitionReader xmlReader = new XmlBeanDefinitionReader(ctx);
        //         xmlReader.loadBeanDefinitions(new ClassPathResource("springjpautils.xml"));
        xmlReader.loadBeanDefinitions(new ClassPathResource("ncbitaxonomy.xml"));

        //PropertyPlaceholderConfigurer cfg = new PropertyPlaceholderConfigurer();
        //cfg.setProperties(databases.get(dbName));
        //ctx.addBeanFactoryPostProcessor(cfg);

        ctx.refresh();

        // add a shutdown hook for the above context...
        ctx.registerShutdownHook();

        return ctx;
    }
}