de.uni_rostock.goodod.test.BasicImportingNormalizerTestCase.java Source code

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Here is the source code for de.uni_rostock.goodod.test.BasicImportingNormalizerTestCase.java

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/**
  Copyright (C) 2012 The University of Rostock.
     
  Written by:  Niels Grewe
  Created: 17.02.2012
      
  This program is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either
  version 3 of the License, or (at your option) any later version.
    
  You should have received a copy of the GNU General Public
  License along with this program; see the file COPYING.
  If not, write to the Free Software Foundation,
  51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
    
 */
package de.uni_rostock.goodod.test;

import java.io.File;
import java.net.URISyntaxException;
import java.util.HashMap;
import java.util.Map;
import java.util.Set;

import org.apache.commons.logging.LogFactory;
import org.junit.*;
import org.semanticweb.owlapi.model.*;
import org.semanticweb.owlapi.util.SimpleIRIMapper;

import de.uni_rostock.goodod.owl.normalization.BasicImportingNormalizerFactory;

/**
 * @author Niels Grewe
 *
 */
public class BasicImportingNormalizerTestCase extends AbstractNormalizerTestCase {
    @Override
    @Before
    public void setUp() throws OWLOntologyCreationException {
        super.setUp();
        IRI physicalTestBioTop = null;
        try {
            physicalTestBioTop = IRI.create(BasicImportingNormalizerTestCase.class
                    .getResource(File.separatorChar + "biotoplite.owl").toURI());
        } catch (URISyntaxException e) {
            LogFactory.getLog(BasicImportingNormalizerTestCase.class).error("Could not get phyiscal BioTopURI", e);
        }
        SimpleIRIMapper bioTopMapper = new SimpleIRIMapper(biotopCanonical, physicalTestBioTop);
        manager.addIRIMapper(bioTopMapper);
        OWLOntologyLoaderConfiguration loaderConf = new OWLOntologyLoaderConfiguration();
        loaderConf = loaderConf.addIgnoredImport(biotopA);
        loaderConf = loaderConf.addIgnoredImport(biotopB);
        loaderConf = loaderConf.setMissingImportHandlingStrategy(MissingImportHandlingStrategy.SILENT);

        Map<IRI, IRI> importMap = new HashMap<IRI, IRI>();
        importMap.put(biotopA, biotopCanonical);
        importMap.put(biotopB, biotopCanonical);
        normalizer = new BasicImportingNormalizerFactory(importMap, loaderConf);
    }

    @Test
    public void testReplacesBioTopA() throws OWLOntologyCreationException {
        OWLImportsDeclaration importA = factory.getOWLImportsDeclaration(biotopA);
        OWLImportsDeclaration importCanonical = factory.getOWLImportsDeclaration(biotopCanonical);
        AddImport addImport = new AddImport(ontology, importA);
        manager.applyChange(addImport);
        normalizer.normalize(ontology);
        Set<OWLImportsDeclaration> imports = ontology.getImportsDeclarations();
        assertTrue(imports.contains(importCanonical));
        assertFalse(imports.contains(importA));
        assertFalse(ontology.getClassesInSignature(true).isEmpty());
    }

    @Test
    public void testReplacesBioTopB() throws OWLOntologyCreationException {
        OWLImportsDeclaration importB = factory.getOWLImportsDeclaration(biotopA);
        OWLImportsDeclaration importCanonical = factory.getOWLImportsDeclaration(biotopCanonical);
        AddImport addImport = new AddImport(ontology, importB);
        manager.applyChange(addImport);
        normalizer.normalize(ontology);
        Set<OWLImportsDeclaration> imports = ontology.getImportsDeclarations();
        assertTrue(imports.contains(importCanonical));
        assertFalse(imports.contains(importB));
        assertFalse(ontology.getClassesInSignature(true).isEmpty());
    }
}