coolmapplugin.impl.CMCyCommunicationPlugin.java Source code

Introduction

Here is the source code for coolmapplugin.impl.CMCyCommunicationPlugin.java

Source

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package coolmapplugin.impl;

import coolmap.application.CoolMapMaster;
import coolmap.application.plugin.CoolMapPlugin;
import coolmapplugin.actions.MapSelectedFromCytoscape;
import coolmapplugin.actions.MapSelectedToCytoscape;
import coolmapplugin.actions.MapSelectedToCytoscapeWithAggregatedValue;
import java.awt.MenuItem;
import org.json.JSONObject;

import net.xeoh.plugins.base.annotations.PluginImplementation;

/**
 *
 * @author Keqiang Li
 */
@PluginImplementation
public class CMCyCommunicationPlugin implements CoolMapPlugin {

    @Override
    public void initialize(JSONObject pluginConfig) {
        initMenuItems();
    }

    @Override
    public String getName() {
        return "CoolMap-Cytoscape-Data-Sync-Plugin";
    }

    private void initMenuItems() {

        CoolMapMaster.getCMainFrame().addMenuSeparator("Plugin");
        MenuItem item = new MenuItem("Without aggregated values");
        CoolMapMaster.getCMainFrame().addMenuItem("Plugin/Cytoscape/Map nodes/", item, false, false);
        item.addActionListener(new MapSelectedToCytoscape());

        CoolMapMaster.getCMainFrame().addMenuSeparator("Plugin");
        item = new MenuItem("Find Cytoscape selection in CoolMap");
        CoolMapMaster.getCMainFrame().addMenuItem("Plugin/Cytoscape", item, false, false);
        item.addActionListener(new MapSelectedFromCytoscape());

        CoolMapMaster.getCMainFrame().addMenuSeparator("Plugin");
        item = new MenuItem("Mean");
        CoolMapMaster.getCMainFrame().addMenuItem("Plugin/Cytoscape/Map nodes/With aggregated values", item, false,
                false);
        item.addActionListener(new MapSelectedToCytoscapeWithAggregatedValue(
                MapSelectedToCytoscapeWithAggregatedValue.AggregationType.MEAN));

        CoolMapMaster.getCMainFrame().addMenuSeparator("Plugin");
        item = new MenuItem("Sum");
        CoolMapMaster.getCMainFrame().addMenuItem("Plugin/Cytoscape/Map nodes/With aggregated values", item, false,
                false);
        item.addActionListener(new MapSelectedToCytoscapeWithAggregatedValue(
                MapSelectedToCytoscapeWithAggregatedValue.AggregationType.SUM));

        CoolMapMaster.getCMainFrame().addMenuSeparator("Plugin");
        item = new MenuItem("Max");
        CoolMapMaster.getCMainFrame().addMenuItem("Plugin/Cytoscape/Map nodes/With aggregated values", item, false,
                false);
        item.addActionListener(new MapSelectedToCytoscapeWithAggregatedValue(
                MapSelectedToCytoscapeWithAggregatedValue.AggregationType.MAX));

        CoolMapMaster.getCMainFrame().addMenuSeparator("Plugin");
        item = new MenuItem("Min");
        CoolMapMaster.getCMainFrame().addMenuItem("Plugin/Cytoscape/Map nodes/With aggregated values", item, false,
                false);
        item.addActionListener(new MapSelectedToCytoscapeWithAggregatedValue(
                MapSelectedToCytoscapeWithAggregatedValue.AggregationType.MIN));

        CoolMapMaster.getCMainFrame().addMenuSeparator("Plugin");
        item = new MenuItem("Median");
        CoolMapMaster.getCMainFrame().addMenuItem("Plugin/Cytoscape/Map nodes/With aggregated values", item, false,
                false);
        item.addActionListener(new MapSelectedToCytoscapeWithAggregatedValue(
                MapSelectedToCytoscapeWithAggregatedValue.AggregationType.MEDIAN));

    }

}