com.zinnia.nectar.regression.hadoop.primitive.jobs.SigmaSqJob.java Source code

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Here is the source code for com.zinnia.nectar.regression.hadoop.primitive.jobs.SigmaSqJob.java

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/**
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package com.zinnia.nectar.regression.hadoop.primitive.jobs;

import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStreamReader;
import java.util.concurrent.Callable;

import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.hadoop.fs.FSDataInputStream;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.DoubleWritable;
import org.apache.hadoop.io.NullWritable;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.lib.chain.ChainMapper;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.mapreduce.lib.input.TextInputFormat;
import org.apache.hadoop.mapreduce.lib.jobcontrol.ControlledJob;
import org.apache.hadoop.mapreduce.lib.jobcontrol.JobControl;
import org.apache.hadoop.mapreduce.lib.output.FileOutputFormat;

import com.zinnia.nectar.config.NectarException;
import com.zinnia.nectar.regression.hadoop.primitive.mapreduce.DoubleSumReducer;
import com.zinnia.nectar.regression.hadoop.primitive.mapreduce.SigmaSqMapper;
import com.zinnia.nectar.util.hadoop.FieldSeperator;

public class SigmaSqJob implements Callable<Double> {
    private Job job;
    private FileSystem fs;
    private ControlledJob controlledJob;
    Log log = LogFactory.getLog(SigmaSqJob.class);

    private String inputFilePath;
    private int column;
    private String outputFilePath;

    public SigmaSqJob(String inputFilePath, String outputFilePath, int column) {
        super();
        this.inputFilePath = inputFilePath;
        this.outputFilePath = outputFilePath;
        this.column = column;
    }

    public Double call() throws NectarException {
        // TODO Auto-generated method stub
        double value = 0;
        JobControl jobControl = new JobControl("sigmajob");
        try {
            job = new Job();
        } catch (IOException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
        job.setJarByClass(SigmaSqJob.class);
        log.info("Sigma square Job initialized");
        log.warn("Sigma square job: Processing...Do not terminate/close");
        log.debug("Sigma square job: Mapping process started");

        try {
            ChainMapper.addMapper(job, FieldSeperator.FieldSeperationMapper.class, DoubleWritable.class, Text.class,
                    NullWritable.class, Text.class, job.getConfiguration());
            ChainMapper.addMapper(job, SigmaSqMapper.class, NullWritable.class, Text.class, Text.class,
                    DoubleWritable.class, job.getConfiguration());
        } catch (IOException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
        job.getConfiguration().set("fields.spec", "" + column);
        job.setReducerClass(DoubleSumReducer.class);
        try {
            FileInputFormat.addInputPath(job, new Path(inputFilePath));
            fs = FileSystem.get(job.getConfiguration());
            if (!fs.exists(new Path(inputFilePath))) {
                throw new NectarException("Exception occured:File " + inputFilePath + " not found ");
            }
        } catch (Exception e) {
            // TODO Auto-generated catch block
            String trace = new String();
            log.error(e.toString());
            for (StackTraceElement s : e.getStackTrace()) {
                trace += "\n\t at " + s.toString();
            }
            log.debug(trace);
            log.debug("Sigma square Job terminated abruptly\n");
            throw new NectarException();
        }
        FileOutputFormat.setOutputPath(job, new Path(outputFilePath));
        job.setOutputKeyClass(Text.class);
        job.setOutputValueClass(DoubleWritable.class);
        job.setInputFormatClass(TextInputFormat.class);
        log.debug("Sigma square job: Mapping process completed");

        log.debug("Sigma square job: Reducing process started");
        try {
            controlledJob = new ControlledJob(job.getConfiguration());
        } catch (IOException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
        jobControl.addJob(controlledJob);
        Thread thread = new Thread(jobControl);
        thread.start();
        while (!jobControl.allFinished()) {
            try {
                Thread.sleep(10000);
            } catch (InterruptedException e) {
                // TODO Auto-generated catch block
                e.printStackTrace();
            }
        }
        jobControl.stop();
        try {
            fs = FileSystem.get(job.getConfiguration());
            FSDataInputStream in = fs.open(new Path(outputFilePath + "/part-r-00000"));
            BufferedReader bufferedReader = new BufferedReader(new InputStreamReader(in));
            String valueLine = bufferedReader.readLine();
            String[] fields = valueLine.split("\t");
            value = Double.parseDouble(fields[1]);
            bufferedReader.close();
            in.close();
        } catch (IOException e) {
            log.error("Exception occured: Output file cannot be read.");
            log.debug(e.getMessage());
            log.debug("Sigma square Job terminated abruptly\n");
            throw new NectarException();
        }
        log.debug("Sigma square job: Reducing process completed");
        log.info("Sigma square Job completed\n");
        return value;
    }
}