Java tutorial
/* * Copyright (C) 2010-2012 "Oh no sequences!" * * This is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/> */ package com.ohnosequences.xml.model.pg; import com.ohnosequences.xml.api.model.XMLElement; import com.ohnosequences.xml.api.model.XMLElementException; import org.jdom2.Element; public class Primer extends XMLElement { public static final String TAG_NAME = "primer"; public static final String SEQUENCE_TAG_NAME = "sequence"; public static final String SEQUENCE_COMPLEMENTARY_INVERTED_TAG_NAME = "sequence_complementary_inverted"; public static final String LENGTH_TAG_NAME = "length"; public Primer() { super(new Element(TAG_NAME)); } public Primer(Element elem) throws XMLElementException { super(elem); if (!elem.getName().equals(TAG_NAME)) { throw new XMLElementException(XMLElementException.WRONG_TAG_NAME, new XMLElement(elem)); } } public Primer(String value) throws Exception { super(value); if (!root.getName().equals(TAG_NAME)) { throw new XMLElementException(XMLElementException.WRONG_TAG_NAME, new XMLElement(value)); } } //----------------GETTERS------------------- public String getSequenceComplementaryInverted() { return getNodeText(SEQUENCE_COMPLEMENTARY_INVERTED_TAG_NAME); } public String getSequence() { return getNodeText(SEQUENCE_TAG_NAME); } public int getLength() { return Integer.parseInt(getNodeText(LENGTH_TAG_NAME)); } //----------------SETTERS------------------- public void setSequenceComplementaryInverted(String value) { setNodeText(SEQUENCE_COMPLEMENTARY_INVERTED_TAG_NAME, value); } public void setSequence(String value) { setNodeText(SEQUENCE_TAG_NAME, value); } public void setLength(int value) { setNodeText(LENGTH_TAG_NAME, String.valueOf(value)); } }