com.ohnosequences.xml.model.oric.Oric.java Source code

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Here is the source code for com.ohnosequences.xml.model.oric.Oric.java

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/*
 * Copyright (C) 2010-2012  "Oh no sequences!"
 *
 * This is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>
 */

package com.ohnosequences.xml.model.oric;

import com.ohnosequences.xml.api.model.XMLElement;
import com.ohnosequences.xml.api.model.XMLElementException;
import org.jdom2.Element;

/**
 *
 * @author ppareja
 */
public class Oric extends XMLElement {

    public static final String TAG_NAME = "oric";

    public static final String ID_TAG_NAME = "id";
    public static final String LOCATION_START_TAG_NAME = "location_start";
    public static final String LOCATION_END_TAG_NAME = "location_end";
    public static final String GENOME_ELEMENT_ID_TAG_NAME = "genome_element_id";
    public static final String GENOME_SIZE_TAG_NAME = "genome_size";
    public static final String TERC_POSITION_TAG_NAME = "terc_position";
    public static final String TYPE_TAG_NAME = "type";
    public static final String ORGANISM_TAG_NAME = "organism";

    public Oric() {
        super(new Element(TAG_NAME));
    }

    public Oric(Element elem) throws XMLElementException {
        super(elem);
        if (!elem.getName().equals(TAG_NAME)) {
            throw new XMLElementException(XMLElementException.WRONG_TAG_NAME, new XMLElement(elem));
        }
    }

    public Oric(String value) throws Exception {
        super(value);
        if (!root.getName().equals(TAG_NAME)) {
            throw new XMLElementException(XMLElementException.WRONG_TAG_NAME, new XMLElement(value));
        }
    }

    //----------------GETTERS---------------------
    public String getId() {
        return getNodeText(ID_TAG_NAME);
    }

    public int getLocationStart() {
        return Integer.parseInt(getNodeText(LOCATION_START_TAG_NAME));
    }

    public int getLocationEnd() {
        return Integer.parseInt(getNodeText(LOCATION_END_TAG_NAME));
    }

    public String getGenomeElementId() {
        return getNodeText(GENOME_ELEMENT_ID_TAG_NAME);
    }

    public int getGenomeSize() {
        return Integer.parseInt(getNodeText(GENOME_SIZE_TAG_NAME));
    }

    public int getTercPosition() {
        return Integer.parseInt(getNodeText(TERC_POSITION_TAG_NAME));
    }

    public int getType() {
        return Integer.parseInt(getNodeText(TYPE_TAG_NAME));
    }

    public String getOrganism() {
        return getNodeText(ORGANISM_TAG_NAME);
    }

    //----------------SETTERS---------------------
    public void setId(String value) {
        setNodeText(ID_TAG_NAME, value);
    }

    public void setLocationStart(int value) {
        setNodeText(LOCATION_START_TAG_NAME, String.valueOf(value));
    }

    public void setLocationEnd(int value) {
        setNodeText(LOCATION_END_TAG_NAME, String.valueOf(value));
    }

    public void setGenomeElementId(String value) {
        setNodeText(GENOME_ELEMENT_ID_TAG_NAME, value);
    }

    public void setGenomeSize(int value) {
        setNodeText(GENOME_SIZE_TAG_NAME, String.valueOf(value));
    }

    public void setTercPosition(int value) {
        setNodeText(TERC_POSITION_TAG_NAME, String.valueOf(value));
    }

    public void setType(int value) {
        setNodeText(TYPE_TAG_NAME, String.valueOf(value));
    }

    public void setOrganism(String value) {
        setNodeText(ORGANISM_TAG_NAME, value);
    }

}