com.muzima.service.HTMLFormObservationCreatorTest.java Source code

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Here is the source code for com.muzima.service.HTMLFormObservationCreatorTest.java

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/*
 * Copyright (c) 2014. The Trustees of Indiana University.
 *
 * This version of the code is licensed under the MPL 2.0 Open Source license with additional
 * healthcare disclaimer. If the user is an entity intending to commercialize any application
 * that uses this code in a for-profit venture, please contact the copyright holder.
 */

package com.muzima.service;

import com.muzima.api.model.Concept;
import com.muzima.api.model.Encounter;
import com.muzima.api.model.Observation;
import com.muzima.api.model.Patient;
import com.muzima.controller.ConceptController;
import com.muzima.controller.EncounterController;
import com.muzima.controller.ObservationController;
import com.muzima.controller.PatientController;
import org.json.JSONException;
import org.junit.Before;
import org.junit.Test;
import org.mockito.ArgumentCaptor;
import org.mockito.Captor;
import org.mockito.Mock;

import java.io.InputStream;
import java.text.ParseException;
import java.util.ArrayList;
import java.util.List;
import java.util.Scanner;

import static java.util.Arrays.asList;
import static org.hamcrest.CoreMatchers.notNullValue;
import static org.hamcrest.core.Is.is;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.junit.matchers.JUnitMatchers.hasItem;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.verify;
import static org.mockito.Mockito.when;
import static org.mockito.MockitoAnnotations.initMocks;

public class HTMLFormObservationCreatorTest {
    private HTMLFormObservationCreator htmlFormObservationCreator;

    @Mock
    private PatientController patientController;

    @Mock
    private ConceptController conceptController;

    @Mock
    private EncounterController encounterController;

    @Mock
    private ObservationController observationController;

    @Mock
    private Patient patient;

    @Captor
    ArgumentCaptor<List<Encounter>> encounterArgumentCaptor;

    @Captor
    ArgumentCaptor<List<Observation>> observationArgumentCaptor;

    @Captor
    ArgumentCaptor<List<Concept>> conceptArgumentCaptor;

    private String mockConceptName;
    private String mockConceptUUID;
    private String formDataUuid;

    @Before
    public void setUp() throws PatientController.PatientLoadException, ConceptController.ConceptFetchException {
        initMocks(this);
        htmlFormObservationCreator = new HTMLFormObservationCreator(patientController, conceptController,
                encounterController, observationController);

        when(patientController.getPatientByUuid("9090900-asdsa-asdsannidj-qwnkika")).thenReturn(patient);

        Concept concept = mock(Concept.class);
        mockConceptName = "HEIGHT (CM)";
        mockConceptUUID = "MyUUID";
        when(concept.getName()).thenReturn(mockConceptName);
        when(concept.getUuid()).thenReturn(mockConceptUUID);

        when(conceptController.getConceptByName(mockConceptName)).thenReturn(concept);
        formDataUuid = "formDataUuid";
    }

    @Test
    public void shouldParseJSONResponseAndCreateObservation() throws PatientController.PatientLoadException,
            JSONException, ParseException, ConceptController.ConceptFetchException {

        htmlFormObservationCreator.createAndPersistObservations(readFile(), formDataUuid);
        List<Observation> observations = htmlFormObservationCreator.getObservations();

        assertThat(observations.size(), is(30));
    }

    @Test
    public void shouldCheckIfAllObservationsHaveEncounterObservationTimeAndPatient()
            throws Exception, PatientController.PatientLoadException, ConceptController.ConceptFetchException {
        htmlFormObservationCreator.createAndPersistObservations(readFile(), formDataUuid);
        List<Observation> observations = htmlFormObservationCreator.getObservations();

        for (Observation observation : observations) {
            assertThat((Patient) observation.getPerson(), is(patient));
            assertThat(observation.getEncounter(), notNullValue());
            assertThat(observation.getObservationDatetime(), notNullValue());
            assertThat(observation.getValueCoded(), notNullValue());
            assertThat(observation.getValueCoded().getConceptType(), notNullValue());
        }
    }

    @Test
    public void shouldCheckIfEncounterHasMinimumAttributes()
            throws Exception, PatientController.PatientLoadException, ConceptController.ConceptFetchException {
        htmlFormObservationCreator.createAndPersistObservations(readFile(), formDataUuid);
        Encounter encounter = htmlFormObservationCreator.getObservations().get(0).getEncounter();
        assertThat(encounter.getEncounterDatetime(), notNullValue());
        assertThat(encounter.getPatient(), notNullValue());
        assertThat(encounter.getProvider(), notNullValue());
        assertThat(encounter.getLocation(), notNullValue());
    }

    @Test
    public void shouldCheckIfAllObservationsHasEitherAFetchedConceptOrNewConcept()
            throws Exception, PatientController.PatientLoadException, ConceptController.ConceptFetchException {
        htmlFormObservationCreator.createAndPersistObservations(readFile(), formDataUuid);
        List<Observation> observations = htmlFormObservationCreator.getObservations();

        boolean conceptUuidAsserted = false;
        for (Observation observation : observations) {
            assertThat(observation.getConcept(), notNullValue());
            conceptUuidAsserted = isMockConceptPresent(mockConceptName, mockConceptUUID, conceptUuidAsserted,
                    observation);
        }
        assertTrue("Expected Concept name is not present", conceptUuidAsserted);
    }

    @Test
    public void shouldCheckIfMultipleObservationsAreCreatedForMultiValuedConcepts()
            throws Exception, PatientController.PatientLoadException, ConceptController.ConceptFetchException {
        htmlFormObservationCreator.createAndPersistObservations(readFile(), formDataUuid);
        List<Observation> observations = htmlFormObservationCreator.getObservations();
        List<Observation> multiValuedObservations = new ArrayList<Observation>();
        for (Observation observation : observations) {
            if (observation.getConcept().getName().equals("REFERRALS ORDERED")) {
                multiValuedObservations.add(observation);
            }
        }
        List<String> expectedValues = asList("7056^REFERRED TO CLINIC^99DCT", "6436^DISPENSARY^99DCT");
        assertThat(multiValuedObservations.size(), is(2));
        assertThat(expectedValues, hasItem(multiValuedObservations.get(0).getValueText()));
        assertThat(expectedValues, hasItem(multiValuedObservations.get(1).getValueText()));
    }

    @Test
    public void shouldVerifyAllObservationsAndRelatedEntitiesAreSaved()
            throws EncounterController.SaveEncounterException, ConceptController.ConceptSaveException,
            ObservationController.SaveObservationException {
        htmlFormObservationCreator.createAndPersistObservations(readFile(), formDataUuid);

        verify(encounterController).saveEncounters(encounterArgumentCaptor.capture());
        assertThat(encounterArgumentCaptor.getValue().size(), is(1));

        verify(conceptController).saveConcepts(conceptArgumentCaptor.capture());

        List<Concept> value = conceptArgumentCaptor.getValue();
        assertThat(value.size(), is(22));

        verify(observationController).saveObservations(observationArgumentCaptor.capture());
        assertThat(observationArgumentCaptor.getValue().size(), is(30));
    }

    private boolean isMockConceptPresent(String mockConceptName, String mockConceptUUID,
            boolean conceptUuidAsserted, Observation observation) {
        if (mockConceptName.equals(observation.getConcept().getName())) {
            assertThat(observation.getConcept().getUuid(), is(mockConceptUUID));
            conceptUuidAsserted = true;
        }
        return conceptUuidAsserted;
    }

    public String readFile() {
        InputStream fileStream = getClass().getClassLoader().getResourceAsStream("html/dispensary.json");
        Scanner s = new Scanner(fileStream).useDelimiter("\\A");
        return s.hasNext() ? s.next() : "{}";
    }

}