Java tutorial
/** * The software subject to this notice and license includes both human readable * source code form and machine readable, binary, object code form. The caIntegrator2 * Software was developed in conjunction with the National Cancer Institute * (NCI) by NCI employees, 5AM Solutions, Inc. (5AM), ScenPro, Inc. (ScenPro) * and Science Applications International Corporation (SAIC). To the extent * government employees are authors, any rights in such works shall be subject * to Title 17 of the United States Code, section 105. * * This caIntegrator2 Software License (the License) is between NCI and You. You (or * Your) shall mean a person or an entity, and all other entities that control, * are controlled by, or are under common control with the entity. Control for * purposes of this definition means (i) the direct or indirect power to cause * the direction or management of such entity, whether by contract or otherwise, * or (ii) ownership of fifty percent (50%) or more of the outstanding shares, * or (iii) beneficial ownership of such entity. * * This License is granted provided that You agree to the conditions described * below. NCI grants You a non-exclusive, worldwide, perpetual, fully-paid-up, * no-charge, irrevocable, transferable and royalty-free right and license in * its rights in the caIntegrator2 Software to (i) use, install, access, operate, * execute, copy, modify, translate, market, publicly display, publicly perform, * and prepare derivative works of the caIntegrator2 Software; (ii) distribute and * have distributed to and by third parties the caIntegrator2 Software and any * modifications and derivative works thereof; and (iii) sublicense the * foregoing rights set out in (i) and (ii) to third parties, including the * right to license such rights to further third parties. For sake of clarity, * and not by way of limitation, NCI shall have no right of accounting or right * of payment from You or Your sub-licensees for the rights granted under this * License. This License is granted at no charge to You. * * Your redistributions of the source code for the Software must retain the * above copyright notice, this list of conditions and the disclaimer and * limitation of liability of Article 6, below. Your redistributions in object * code form must reproduce the above copyright notice, this list of conditions * and the disclaimer of Article 6 in the documentation and/or other materials * provided with the distribution, if any. * * Your end-user documentation included with the redistribution, if any, must * include the following acknowledgment: This product includes software * developed by 5AM, ScenPro, SAIC and the National Cancer Institute. If You do * not include such end-user documentation, You shall include this acknowledgment * in the Software itself, wherever such third-party acknowledgments normally * appear. * * You may not use the names "The National Cancer Institute", "NCI", "ScenPro", * "SAIC" or "5AM" to endorse or promote products derived from this Software. * This License does not authorize You to use any trademarks, service marks, * trade names, logos or product names of either NCI, ScenPro, SAID or 5AM, * except as required to comply with the terms of this License. * * For sake of clarity, and not by way of limitation, You may incorporate this * Software into Your proprietary programs and into any third party proprietary * programs. However, if You incorporate the Software into third party * proprietary programs, You agree that You are solely responsible for obtaining * any permission from such third parties required to incorporate the Software * into such third party proprietary programs and for informing Your a * sub-licensees, including without limitation Your end-users, of their * obligation to secure any required permissions from such third parties before * incorporating the Software into such third party proprietary software * programs. In the event that You fail to obtain such permissions, You agree * to indemnify NCI for any claims against NCI by such third parties, except to * the extent prohibited by law, resulting from Your failure to obtain such * permissions. * * For sake of clarity, and not by way of limitation, You may add Your own * copyright statement to Your modifications and to the derivative works, and * You may provide additional or different license terms and conditions in Your * sublicenses of modifications of the Software, or any derivative works of the * Software as a whole, provided Your use, reproduction, and distribution of the * Work otherwise complies with the conditions stated in this License. * * THIS SOFTWARE IS PROVIDED "AS IS," AND ANY EXPRESSED OR IMPLIED WARRANTIES, * (INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, * NON-INFRINGEMENT AND FITNESS FOR A PARTICULAR PURPOSE) ARE DISCLAIMED. IN NO * EVENT SHALL THE NATIONAL CANCER INSTITUTE, 5AM SOLUTIONS, INC., SCENPRO, INC., * SCIENCE APPLICATIONS INTERNATIONAL CORPORATION OR THEIR * AFFILIATES BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; * OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR * OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ package com.fiveamsolutions.nci.commons.kmplot; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertNull; import static org.junit.Assert.assertTrue; import java.awt.Color; import java.util.Map; import org.apache.commons.lang.StringUtils; import org.junit.Test; import org.springframework.mock.web.MockHttpServletResponse; public class KMPlotServiceTest { @Test public void testGeneratePlot() throws Exception { KMPlot plot = getPlot(); MockHttpServletResponse response = new MockHttpServletResponse(); plot.writePlotImage(response.getOutputStream()); assertNotNull(response.getContentAsString()); assertTrue(StringUtils.isNotBlank(response.getContentAsString())); } private KMPlot getPlot() { KMPlotConfiguration configuration = new KMPlotConfiguration(); configuration.setTitle("title"); configuration.setDurationLabel("duration"); configuration.setProbabilityLabel("probability"); configuration.getGroups().add(createGroup("group 1", 2, Color.RED)); configuration.getGroups().add(createGroup("group 2", 5, Color.GREEN)); configuration.getGroups().add(createGroup("group 3", 2, Color.BLUE)); configuration.getGroups().add(createGroup("group 4", 1, Color.BLACK)); configuration.getGroups().add(createGroup("group 5", 1, Color.GRAY)); KMPlot plot = new KMPlotServiceImpl().generatePlot(configuration); assertNotNull(plot); assertNotNull(plot.getConfiguration()); assertNotNull(plot.getConfiguration().getGroups()); assertEquals(5, plot.getConfiguration().getGroups().size()); verifyGroup(plot, 0, "group 1", 2, Color.RED); verifyGroup(plot, 1, "group 2", 5, Color.GREEN); verifyGroup(plot, 2, "group 3", 2, Color.BLUE); verifyGroup(plot, 3, "group 4", 1, Color.BLACK); verifyGroup(plot, 4, "group 5", 1, Color.GRAY); return plot; } private SubjectGroup createGroup(String groupName, int subjectCount, Color color) { SubjectGroup group = new SubjectGroup(); group.setColor(color); group.setName(groupName); for (int i = 1; i <= subjectCount; i++) { SubjectSurvivalData survivalData = new SubjectSurvivalData(i, false); group.getSurvivalData().add(survivalData); } return group; } private void verifyGroup(KMPlot plot, int groupIndex, String groupName, int subjectCount, Color color) { SubjectGroup sg = plot.getConfiguration().getGroups().get(groupIndex); assertNotNull(sg); assertEquals(groupName, sg.getName()); assertEquals(color, sg.getColor()); assertNotNull(sg.getSurvivalData()); assertEquals(subjectCount, sg.getSurvivalData().size()); for (int i = 0; i < subjectCount; i++) { SubjectSurvivalData ssd = sg.getSurvivalData().get(i); assertNotNull(ssd); assertFalse(ssd.isCensor()); assertEquals(i + 1, ssd.getSurvivalLength()); } } @Test public void testGetAllStringPValues() { KMPlot plot = getPlot(); Map<String, Map<String, String>> pValues = KMPlotUtils.retrieveAllStringPValues(plot); assertNull(pValues.get("group 1").get("group 1")); assertEquals("0.18", pValues.get("group 1").get("group 2")); assertEquals("1.00", pValues.get("group 1").get("group 3")); assertEquals("0.48", pValues.get("group 1").get("group 4")); assertEquals("0.48", pValues.get("group 1").get("group 5")); assertNull(pValues.get("group 2").get("group 1")); assertNull(pValues.get("group 2").get("group 2")); assertEquals("0.18", pValues.get("group 2").get("group 3")); assertEquals("0.16", pValues.get("group 2").get("group 4")); assertEquals("0.16", pValues.get("group 2").get("group 5")); assertNull(pValues.get("group 3").get("group 1")); assertNull(pValues.get("group 3").get("group 2")); assertNull(pValues.get("group 3").get("group 3")); assertEquals("0.48", pValues.get("group 3").get("group 4")); assertEquals("0.48", pValues.get("group 3").get("group 5")); assertNull(pValues.get("group 4").get("group 1")); assertNull(pValues.get("group 4").get("group 2")); assertNull(pValues.get("group 4").get("group 3")); assertNull(pValues.get("group 4").get("group 4")); assertEquals("N/A", pValues.get("group 4").get("group 5")); assertNull(pValues.get("group 5").get("group 1")); assertNull(pValues.get("group 5").get("group 2")); assertNull(pValues.get("group 5").get("group 3")); assertNull(pValues.get("group 5").get("group 4")); assertNull(pValues.get("group 5").get("group 5")); } }