com.clarkparsia.sbol.editor.dialog.SOMappingTab.java Source code

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Here is the source code for com.clarkparsia.sbol.editor.dialog.SOMappingTab.java

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/*
 * Copyright (c) 2012 - 2015, Clark & Parsia, LLC. <http://www.clarkparsia.com>
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package com.clarkparsia.sbol.editor.dialog;

import java.awt.BorderLayout;
import java.awt.Component;
import java.awt.Dimension;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.net.URI;
import java.util.Collections;
import java.util.List;

import javax.swing.BorderFactory;
import javax.swing.BoxLayout;
import javax.swing.Icon;
import javax.swing.ImageIcon;
import javax.swing.JComboBox;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.JTable;
import javax.swing.ListSelectionModel;

import org.openrdf.model.impl.URIImpl;

import com.clarkparsia.sbol.editor.Images;
import com.clarkparsia.sbol.editor.Part;
import com.clarkparsia.sbol.editor.Parts;
import com.clarkparsia.sbol.editor.dialog.PreferencesDialog.PreferencesTab;
import com.clarkparsia.sbol.terms.SO;
import com.clarkparsia.swing.AbstractListTableModel;
import com.clarkparsia.swing.FormBuilder;
import com.google.common.collect.Iterables;

public enum SOMappingTab implements PreferencesTab {
    INSTANCE;

    @Override
    public String getTitle() {
        return "Mappings";
    }

    @Override
    public String getDescription() {
        return "Mappinfs between SO terms and SBOL visual icons";
    }

    @Override
    public Icon getIcon() {
        return new ImageIcon(Images.getActionImage("so_icon.png"));
    }

    @Override
    public Component getComponent() {
        final URITableModel tableModel = new URITableModel(Collections.<URI>emptyList());
        final JTable table = new JTable(tableModel);
        table.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
        table.setPreferredScrollableViewportSize(new Dimension(100, 100));

        InputDialog.setWidthAsPercentages(table, tableModel.getWidths());

        final JComboBox typeSelection = new JComboBox(Iterables.toArray(Parts.sorted(), Part.class));
        typeSelection.setRenderer(new PartCellRenderer());
        typeSelection.addActionListener(new ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
                Part part = (Part) typeSelection.getSelectedItem();
                ((URITableModel) table.getModel()).setElements(part.getTypes());
            }
        });
        typeSelection.setSelectedItem(Parts.GENERIC);

        FormBuilder form = new FormBuilder();
        form.add("SBOL Part", typeSelection);
        JPanel topPanel = form.build();

        JPanel tablePanel = new JPanel();
        tablePanel.setLayout(new BoxLayout(tablePanel, BoxLayout.PAGE_AXIS));
        JLabel label = new JLabel("SO Types");
        label.setLabelFor(table);
        label.setAlignmentX(Component.LEFT_ALIGNMENT);

        JScrollPane tableScroller = new JScrollPane(table);
        //      tableScroller.setPreferredSize(new Dimension(450, 200));
        tableScroller.setAlignmentX(Component.LEFT_ALIGNMENT);

        //      tablePane.add(label);
        //      tablePane.add(Box.createRigidArea(new Dimension(0, 5)));
        tablePanel.add(tableScroller);
        //      tablePane.setBorder(BorderFactory.createEmptyBorder(10, 10, 10, 10));

        //      TableRowSorter<TableModel> sorter = new TableRowSorter<TableModel>(tableModel);
        //      table.setRowSorter(sorter);

        JPanel panel = new JPanel(new BorderLayout());
        panel.setBorder(BorderFactory.createEmptyBorder(10, 10, 10, 10));
        panel.add(topPanel, BorderLayout.NORTH);
        panel.add(tablePanel, BorderLayout.CENTER);
        return panel;
    }

    @Override
    public void save() {
    }

    @Override
    public boolean requiresRestart() {
        return false;
    }

    private static class URITableModel extends AbstractListTableModel<URI> {
        private static final String[] COLUMNS = { "Accession Id", "Name" };
        private static final double[] WIDTHS = { 0.3, 0.7 };

        public URITableModel(List<URI> terms) {
            super(terms, COLUMNS, WIDTHS);
        }

        public Object getField(URI term, int col) {
            switch (col) {
            case 0:
                return new URIImpl(term.toString()).getLocalName();
            case 1:
                return SO.getInstance().getTerm(term.toString()).getLabel();
            default:
                throw new IndexOutOfBoundsException();
            }
        }
    }
}