com.actelion.research.spiritapp.report.StudyDesignReport.java Source code

Introduction

Here is the source code for com.actelion.research.spiritapp.report.StudyDesignReport.java

Source

/*
 * Spirit, a study/biosample management tool for research.
 * Copyright (C) 2018 Idorsia Pharmaceuticals Ltd., Hegenheimermattweg 91,
 * CH-4123 Allschwil, Switzerland.
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>
 *
 * @author Joel Freyss
 */

package com.actelion.research.spiritapp.report;

import java.awt.image.BufferedImage;
import java.io.ByteArrayOutputStream;

import javax.imageio.ImageIO;

import org.apache.poi.ss.usermodel.ClientAnchor;
import org.apache.poi.ss.usermodel.CreationHelper;
import org.apache.poi.ss.usermodel.Drawing;
import org.apache.poi.ss.usermodel.Picture;
import org.apache.poi.ss.usermodel.Sheet;
import org.apache.poi.ss.usermodel.Workbook;

import com.actelion.research.spiritapp.ui.SpiritFrame;
import com.actelion.research.spiritapp.ui.study.depictor.StudyDepictor;
import com.actelion.research.spiritapp.ui.util.POIUtils;
import com.actelion.research.spiritcore.business.study.NamedSampling;
import com.actelion.research.spiritcore.business.study.NamedTreatment;
import com.actelion.research.spiritcore.business.study.Sampling;
import com.actelion.research.spiritcore.services.dao.DAOSpiritUser;
import com.actelion.research.spiritcore.services.dao.DAOStudy;
import com.actelion.research.spiritcore.util.MiscUtils;
import com.actelion.research.util.ui.FastFont;

public class StudyDesignReport extends AbstractReport {

    public StudyDesignReport() {
        super(ReportCategory.STUDY, "Design",
                "<ul><li>Study design,<li>Sampling templates<li>Treatment descriptions");
    }

    @Override
    protected void populateWorkBook() throws Exception {
        CreationHelper helper = wb.getCreationHelper();

        //create sheet
        Sheet sheet = createSheet(wb, "Study Design");
        sheet.setPrintGridlines(false);
        createHeadersWithTitle(sheet, study, "Study Design");

        // Create the drawing patriarch.  This is the top level container for all shapes.
        Drawing drawing = sheet.createDrawingPatriarch();

        ByteArrayOutputStream os = new ByteArrayOutputStream();
        //10.5inches*600 = 6300 pixels, 7.5*600=4500 pixels, on 600dpi
        int size = FastFont.getDefaultFontSize();
        FastFont.setDefaultFontSize(36);
        BufferedImage img = StudyDepictor.getImage(study, 6300, 4500, 1);
        ImageIO.write(img, "PNG", os);
        FastFont.setDefaultFontSize(size);

        //add a picture shape
        int pictureIdx = wb.addPicture(os.toByteArray(), Workbook.PICTURE_TYPE_PNG);

        ClientAnchor anchor = helper.createClientAnchor();
        anchor.setAnchorType(ClientAnchor.MOVE_DONT_RESIZE);
        anchor.setCol1(0);
        anchor.setRow1(3);
        Picture pict = drawing.createPicture(anchor, pictureIdx);
        final double scaleDown = .33;
        //Samplings
        int y = (int) (img.getHeight() * scaleDown) / 20 + 5;
        int nSamplings = 0;
        for (NamedSampling ns : study.getNamedSamplings()) {
            nSamplings = Math.max(nSamplings, ns.getAllSamplings().size());
        }
        if (study.getNamedSamplings().size() > 0) {
            set(sheet, y++, 0, "Sampling Templates", Style.S_TITLE14BLUE);
            int count = 0;
            for (NamedSampling ns : study.getNamedSamplings()) {
                set(sheet, y, count, ns.getName(), Style.S_TH_LEFT);
                int line = 0;
                for (Sampling s : ns.getAllSamplings()) {
                    set(sheet, y + (++line), count, MiscUtils.removeHtml(s.getDetailsWithMeasurements()),
                            Style.S_TD_LEFT);
                }
                while (line < nSamplings) {
                    set(sheet, y + (++line), count, "", Style.S_TD_LEFT);
                }
                count++;
            }
        }

        //Treatments
        y += nSamplings + 3;
        if (study.getNamedTreatments().size() > 0) {
            set(sheet, y++, 0, "Treatments", Style.S_TITLE14BLUE);
            int count = 0;
            for (NamedTreatment nt : study.getNamedTreatments()) {
                set(sheet, y, count, nt.getName(), Style.S_TH_LEFT);
                set(sheet, y + 1, count, nt.getCompoundAndUnit1(), Style.S_TD_LEFT);
                set(sheet, y + 2, count, nt.getCompoundAndUnit2(), Style.S_TD_LEFT);
                count++;
            }
        }

        POIUtils.autoSizeColumns(sheet, -1, true);
        pict.resize();
        pict.resize(scaleDown);

    }

    public static void main(String[] args) {
        try {
            SpiritFrame.setUser(DAOSpiritUser.loadUser("freyssj"));
            StudyDesignReport wg = new StudyDesignReport();
            wg.populateReport(DAOStudy.getStudyByStudyId("S-00627"));
            wg.export(null);
        } catch (Exception e) {
            e.printStackTrace();
        }
        System.exit(1);
    }

}