ca.nrc.cadc.dali.tables.votable.VOTableWriter.java Source code

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/*
************************************************************************
*******************  CANADIAN ASTRONOMY DATA CENTRE  *******************
**************  CENTRE CANADIEN DE DONNES ASTRONOMIQUES  **************
*
*  (c) 2011.                            (c) 2011.
*  Government of Canada                 Gouvernement du Canada
*  National Research Council            Conseil national de recherches
*  Ottawa, Canada, K1A 0R6              Ottawa, Canada, K1A 0R6
*  All rights reserved                  Tous droits rservs
*
*  NRC disclaims any warranties,        Le CNRC dnie toute garantie
*  expressed, implied, or               nonce, implicite ou lgale,
*  statutory, of any kind with          de quelque nature que ce
*  respect to the software,             soit, concernant le logiciel,
*  including without limitation         y compris sans restriction
*  any warranty of merchantability      toute garantie de valeur
*  or fitness for a particular          marchande ou de pertinence
*  purpose. NRC shall not be            pour un usage particulier.
*  liable in any event for any          Le CNRC ne pourra en aucun cas
*  damages, whether direct or           tre tenu responsable de tout
*  indirect, special or general,        dommage, direct ou indirect,
*  consequential or incidental,         particulier ou gnral,
*  arising from the use of the          accessoire ou fortuit, rsultant
*  software.  Neither the name          de l'utilisation du logiciel. Ni
*  of the National Research             le nom du Conseil National de
*  Council of Canada nor the            Recherches du Canada ni les noms
*  names of its contributors may        de ses  participants ne peuvent
*  be used to endorse or promote        tre utiliss pour approuver ou
*  products derived from this           promouvoir les produits drivs
*  software without specific prior      de ce logiciel sans autorisation
*  written permission.                  pralable et particulire
*                                       par crit.
*
*  This file is part of the             Ce fichier fait partie du projet
*  OpenCADC project.                    OpenCADC.
*
*  OpenCADC is free software:           OpenCADC est un logiciel libre ;
*  you can redistribute it and/or       vous pouvez le redistribuer ou le
*  modify it under the terms of         modifier suivant les termes de
*  the GNU Affero General Public        la GNU Affero General Public
*  License as published by the          License? telle que publie
*  Free Software Foundation,            par la Free Software Foundation
*  either version 3 of the              : soit la version 3 de cette
*  License, or (at your option)         licence, soit ( votre gr)
*  any later version.                   toute version ultrieure.
*
*  OpenCADC is distributed in the       OpenCADC est distribu
*  hope that it will be useful,         dans lespoir quil vous
*  but WITHOUT ANY WARRANTY;            sera utile, mais SANS AUCUNE
*  without even the implied             GARANTIE : sans mme la garantie
*  warranty of MERCHANTABILITY          implicite de COMMERCIALISABILIT
*  or FITNESS FOR A PARTICULAR          ni dADQUATION  UN OBJECTIF
*  PURPOSE.  See the GNU Affero         PARTICULIER. Consultez la Licence
*  General Public License for           Gnrale Publique GNU Affero
*  more details.                        pour plus de dtails.
*
*  You should have received             Vous devriez avoir reu une
*  a copy of the GNU Affero             copie de la Licence Gnrale
*  General Public License along         Publique GNU Affero avec
*  with OpenCADC.  If not, see          OpenCADC ; si ce nest
*  <http://www.gnu.org/licenses/>.      pas le cas, consultez :
*                                       <http://www.gnu.org/licenses/>.
*
*  $Revision: 5 $
*
************************************************************************
*/

package ca.nrc.cadc.dali.tables.votable;

import java.io.BufferedWriter;
import java.io.IOException;
import java.io.OutputStream;
import java.io.OutputStreamWriter;
import java.io.Writer;
import java.util.Iterator;
import java.util.List;

import org.apache.log4j.Logger;
import org.jdom2.Document;
import org.jdom2.Element;
import org.jdom2.Namespace;
import org.jdom2.output.XMLOutputter;

import ca.nrc.cadc.dali.tables.TableWriter;
import ca.nrc.cadc.dali.util.Format;
import ca.nrc.cadc.dali.util.FormatFactory;
import ca.nrc.cadc.uws.util.ContentConverter;
import ca.nrc.cadc.uws.util.IterableContent;
import ca.nrc.cadc.uws.util.MaxIterations;

/**
 *
 * @author pdowler
 */
public class VOTableWriter implements TableWriter<VOTable> {
    private static final Logger log = Logger.getLogger(VOTableWriter.class);

    public static final String CONTENT_TYPE = "application/x-votable+xml";

    // VOTable Version number.
    public static final String VOTABLE_VERSION = "1.2";

    // Uri to the XML schema.
    public static final String XSI_SCHEMA = "http://www.w3.org/2001/XMLSchema-instance";

    // Uri to the VOTable schema.
    public static final String VOTABLE_11_NS_URI = "http://www.ivoa.net/xml/VOTable/v1.1";
    public static final String VOTABLE_12_NS_URI = "http://www.ivoa.net/xml/VOTable/v1.2";

    private boolean binaryTable;

    /**
     * Default constructor.
     */
    public VOTableWriter() {
        this(false);
    }

    /**
     * Create a VOTableWriter and optionally support binary TABLEDATA cells (not
     * yet implemented.)
     *
     * @param binaryTable
     */
    public VOTableWriter(boolean binaryTable) {
        this.binaryTable = binaryTable;
    }

    /**
     * Get the Content-Type for the VOTable.
     *
     * @return  VOTable Content-Type.
     */
    public String getContentType() {
        return CONTENT_TYPE;
    }

    /**
     * Get the extension for the VOTable.
     *
     * @return VOTable extension.
     */
    public String getExtension() {
        return "xml";
    }

    /**
     * Write the VOTable to the specified OutputStream.
     *
     * @param votable VOTable object to write.
     * @param ostream OutputStream to write to.
     * @throws IOException if problem writing to OutputStream.
     */
    public void write(VOTable votable, OutputStream ostream) throws IOException {
        write(votable, ostream, Long.MAX_VALUE);
    }

    /**
     * Write the VOTable to the specified OutputStream, only writing maxrec rows.
     * If the VOTable contains more than maxrec rows, appends an INFO element with
     * name="QUERY_STATUS" value="OVERFLOW" to the VOTable.
     *
     * @param votable VOTable object to write.
     * @param ostream OutputStream to write to.
     * @param maxRec maximum number of rows to write.
     * @throws IOException if problem writing to OutputStream.
     */
    public void write(VOTable votable, OutputStream ostream, Long maxrec) throws IOException {
        Writer writer = new BufferedWriter(new OutputStreamWriter(ostream, "UTF-8"));
        write(votable, writer, maxrec);
    }

    /**
     * Write the VOTable to the specified Writer.
     *
     * @param votable VOTable object to write.
     * @param writer Writer to write to.
     * @throws IOException if problem writing to the writer.
     */
    public void write(VOTable votable, Writer writer) throws IOException {
        write(votable, writer, Long.MAX_VALUE);
    }

    /**
     * Write the VOTable to the specified Writer, only writing maxrec rows.
     * If the VOTable contains more than maxrec rows, appends an INFO element with
     * name="QUERY_STATUS" value="OVERFLOW" to the VOTable.
     *
     * @param votable VOTable object to write.
     * @param writer Writer to write to.
     * @param maxRec maximum number of rows to write.
     * @throws IOException if problem writing to the writer.
     */
    public void write(VOTable votable, Writer writer, Long maxrec) throws IOException {
        log.debug("write, maxrec=" + maxrec);

        // VOTable document and root element.
        Document document = createDocument();
        Element root = document.getRootElement();
        Namespace namespace = root.getNamespace();

        // Create the RESOURCE element and add to the VOTABLE element.
        Element resource = new Element("RESOURCE", namespace);
        if (votable.getResourceName() != null) {
            resource.setAttribute("name", votable.getResourceName());
        }
        root.addContent(resource);

        // Create the INFO element and add to the RESOURCE element.
        for (Info in : votable.getInfos()) {
            Element info = new Element("INFO", namespace);
            info.setAttribute("name", in.getName());
            info.setAttribute("value", in.getValue());
            resource.addContent(info);
        }

        // Create the TABLE element and add to the RESOURCE element.
        Element table = new Element("TABLE", namespace);
        resource.addContent(table);

        // Add the metadata elements.
        for (TableParam param : votable.getParams()) {
            table.addContent(new ParamElement(param, namespace));
        }
        for (TableField field : votable.getColumns()) {
            table.addContent(new FieldElement(field, namespace));
        }

        // Create the DATA and TABLEDATA elements.
        Element data = new Element("DATA", namespace);
        table.addContent(data);

        // Add content.
        try {
            Iterator<List<Object>> it = votable.getTableData().iterator();

            TabledataContentConverter elementConverter = new TabledataContentConverter(namespace);
            TabledataMaxIterations maxIterations = new TabledataMaxIterations(maxrec, resource, namespace);

            IterableContent<Element, List<Object>> tabledata = new IterableContent<Element, List<Object>>(
                    "TABLEDATA", namespace, it, elementConverter, maxIterations);

            data.addContent(tabledata);
        } catch (Throwable t) {
            log.debug("failure while iterating", t);
            Element info = new Element("INFO", namespace);
            info.setAttribute("name", "QUERY_STATUS");
            info.setAttribute("value", "ERROR");
            info.setText(t.toString());
            resource.addContent(info);
        }

        // Write out the VOTABLE.
        XMLOutputter outputter = new XMLOutputter();
        outputter.setFormat(org.jdom2.output.Format.getPrettyFormat());
        outputter.output(document, writer);
    }

    /**
     * Write the Throwable to a VOTable, creating an INFO element with
     * name="QUERY_STATUS" value="ERROR" and setting the stacktrace as
     * the INFO text.
     *
     * @param thrown Throwable to write.
     * @param output OutputStream to write to.
     * @throws IOException if problem writing to the stream.
     */
    public void write(Throwable thrown, OutputStream output) throws IOException {
        Document document = createDocument();
        Element root = document.getRootElement();
        Namespace namespace = root.getNamespace();

        // Create the RESOURCE element and add to the VOTABLE element.
        Element resource = new Element("RESOURCE", namespace);
        resource.setAttribute("type", "results");
        root.addContent(resource);

        // Create the INFO element and add to the RESOURCE element.
        Element info = new Element("INFO", namespace);
        info.setAttribute("name", "QUERY_STATUS");
        info.setAttribute("value", "ERROR");
        info.setText(getThrownExceptions(thrown));
        resource.addContent(info);

        // Write out the VOTABLE.
        XMLOutputter outputter = new XMLOutputter();
        outputter.setFormat(org.jdom2.output.Format.getPrettyFormat());
        outputter.output(document, output);
    }

    /**
     * Builds a empty VOTable document with the appropriate namespaces and
     * attributes.
     *
     * @return VOTable document.
     */
    protected Document createDocument() {
        // the root VOTABLE element
        Namespace vot = Namespace.getNamespace(VOTABLE_12_NS_URI);
        Namespace xsi = Namespace.getNamespace("xsi", XSI_SCHEMA);
        Element votable = new Element("VOTABLE", vot);
        votable.setAttribute("version", VOTABLE_VERSION);
        votable.addNamespaceDeclaration(xsi);

        Document document = new Document();
        document.addContent(votable);

        return document;
    }

    // Build a String containing the nested Exception messages.
    private String getThrownExceptions(Throwable thrown) {
        StringBuilder sb = new StringBuilder();
        sb.append(thrown.getClass().getSimpleName());
        sb.append(": ");
        if (thrown.getMessage() == null)
            sb.append("");
        else
            sb.append(thrown.getMessage());
        while (thrown.getCause() != null) {
            thrown = thrown.getCause();
            sb.append(" ");
            sb.append(thrown.getClass().getSimpleName());
            sb.append(": ");
            if (thrown.getMessage() == null)
                sb.append("");
            else
                sb.append(thrown.getMessage());
        }
        return sb.toString();
    }

    private class TabledataMaxIterations implements MaxIterations {

        private long maxRec;
        private Element resource;
        private Namespace namespace;

        TabledataMaxIterations(Long maxRec, Element resource, Namespace namespace) {
            if (maxRec == null)
                this.maxRec = Long.MAX_VALUE;
            else
                this.maxRec = maxRec;
            this.resource = resource;
            this.namespace = namespace;
        }

        @Override
        public long getMaxIterations() {
            return maxRec;
        }

        @Override
        public void maxIterationsReached() {
            // If maxRec reached, write overflow INFO.
            Element info = new Element("INFO", namespace);
            info.setAttribute("name", "QUERY_STATUS");
            info.setAttribute("value", "OVERFLOW");
            resource.addContent(info);
        }

    }

    private class TabledataContentConverter implements ContentConverter<Element, List<Object>> {

        private Namespace namespace;

        TabledataContentConverter(Namespace namespace) {
            this.namespace = namespace;
        }

        @Override
        public Element convert(List<Object> columns) {
            // TR element.
            Element tr = new Element("TR", namespace);

            // TD elements.
            for (int i = 0; i < columns.size(); i++) {
                Object column = columns.get(i);
                Class c = null;
                if (column != null) {
                    c = column.getClass();
                }
                Format format = FormatFactory.getFormat(c);
                Element td = new Element("TD", namespace);
                td.setText(format.format(column));
                tr.addContent(td);
            }

            return tr;

        }

    }

}