Java tutorial
/******************************************************************************* * Copyright (c) 2011 University of Western Australia. All rights reserved. * * This file is part of The Ark. * * The Ark is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 3 * of the License, or (at your option) any later version. * * The Ark is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. ******************************************************************************/ package au.org.theark.study.web.component.subject; import java.util.ArrayList; import java.util.Collection; import java.util.Iterator; import java.util.List; import org.apache.commons.lang.BooleanUtils; import org.apache.shiro.SecurityUtils; import org.apache.wicket.Component; import org.apache.wicket.ajax.AjaxRequestTarget; import org.apache.wicket.ajax.markup.html.navigation.paging.AjaxPagingNavigator; import org.apache.wicket.extensions.markup.html.repeater.data.table.DataTable; import org.apache.wicket.extensions.markup.html.repeater.data.table.IColumn; import org.apache.wicket.markup.html.WebMarkupContainer; import org.apache.wicket.markup.html.form.TextField; import org.apache.wicket.markup.html.list.PageableListView; import org.apache.wicket.markup.html.navigation.paging.PagingNavigator; import org.apache.wicket.markup.repeater.RepeatingView; import org.apache.wicket.markup.repeater.data.DataView; import org.apache.wicket.model.CompoundPropertyModel; import org.apache.wicket.model.Model; import org.apache.wicket.spring.injection.annot.SpringBean; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import au.org.theark.core.exception.ArkSystemException; import au.org.theark.core.exception.EntityNotFoundException; import au.org.theark.core.model.study.entity.GenderType; import au.org.theark.core.model.study.entity.LinkSubjectStudy; import au.org.theark.core.model.study.entity.OtherID; import au.org.theark.core.model.study.entity.Person; import au.org.theark.core.model.study.entity.Study; import au.org.theark.core.service.IArkCommonService; import au.org.theark.core.vo.SubjectVO; import au.org.theark.core.web.component.AbstractContainerPanel; import au.org.theark.core.web.component.AbstractDetailModalWindow; import au.org.theark.core.web.component.ArkDataProvider; import au.org.theark.core.web.component.export.ExportToolbar; import au.org.theark.core.web.component.export.ExportableDateColumn; import au.org.theark.core.web.component.export.ExportableTextColumn; import au.org.theark.study.model.vo.RelationshipVo; import au.org.theark.study.service.IStudyService; import au.org.theark.study.web.Constants; import au.org.theark.study.web.component.subject.form.ContainerForm; /** * @author nivedann * */ public class SubjectContainerPanel extends AbstractContainerPanel<SubjectVO> { private static final long serialVersionUID = 2166285054533611912L; private static final Logger log = LoggerFactory.getLogger(SubjectContainerPanel.class); private SearchPanel searchPanel; private SearchResultListPanel searchResultsPanel; private DetailPanel detailPanel; private PageableListView<SubjectVO> pageableListView; private ContainerForm containerForm; private WebMarkupContainer arkContextMarkup; @SpringBean(name = au.org.theark.core.Constants.ARK_COMMON_SERVICE) private IArkCommonService iArkCommonService; @SpringBean(name = au.org.theark.core.Constants.STUDY_SERVICE) private IStudyService iStudyService; @SpringBean(name = Constants.STUDY_SERVICE) private IStudyService studyService; private DataView<SubjectVO> dataView; private ArkDataProvider<SubjectVO, IArkCommonService> subjectProvider; private Long sessionStudyId; private Study study = new Study(); protected WebMarkupContainer studyNameMarkup; protected WebMarkupContainer studyLogoMarkup; protected WebMarkupContainer resultsWmc = new WebMarkupContainer("resultsWmc"); /** * @param id * @param studyLogoMarkup * @param studyNameMarkup */ public SubjectContainerPanel(String id, WebMarkupContainer arkContextMarkup, WebMarkupContainer studyNameMarkup, WebMarkupContainer studyLogoMarkup) { super(id); this.arkContextMarkup = arkContextMarkup; this.studyNameMarkup = studyNameMarkup; this.studyLogoMarkup = studyLogoMarkup; /* Initialise the CPM */ cpModel = new CompoundPropertyModel<SubjectVO>(new SubjectVO()); // Restrict to subjects in current study in session sessionStudyId = (Long) SecurityUtils.getSubject().getSession() .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID); if (sessionStudyId != null) { study = iArkCommonService.getStudy(sessionStudyId); List<Study> studyListForUser = iArkCommonService.getParentAndChildStudies(sessionStudyId); cpModel.getObject().setStudyList(studyListForUser); } containerForm = new ContainerForm("containerForm", cpModel); containerForm.add(initialiseFeedBackPanel()); containerForm.add(initialiseDetailPanel()); containerForm.add(initialiseSearchResults()); containerForm.add(initialiseSearchPanel()); prerenderContextCheck(); add(containerForm); } /** * Re-use in pedigree panel * * @param id * @param studyLogoMarkup * @param studyNameMarkup * @param modalWindow */ public SubjectContainerPanel(String id, WebMarkupContainer arkContextMarkup, WebMarkupContainer studyNameMarkup, WebMarkupContainer studyLogoMarkup, AbstractDetailModalWindow modalWindow, String gender, List<RelationshipVo> relatives) { super(id); this.arkContextMarkup = arkContextMarkup; this.studyNameMarkup = studyNameMarkup; this.studyLogoMarkup = studyLogoMarkup; /* Initialise the CPM */ SubjectVO subjectVO = new SubjectVO(); subjectVO.setEnableNewButton(false); cpModel = new CompoundPropertyModel<SubjectVO>(subjectVO); // Restrict to subjects in current study in session sessionStudyId = (Long) SecurityUtils.getSubject().getSession() .getAttribute(au.org.theark.core.Constants.STUDY_CONTEXT_ID); if (sessionStudyId != null) { study = iArkCommonService.getStudy(sessionStudyId); List<Study> studyListForUser = iArkCommonService.getParentAndChildStudies(sessionStudyId); cpModel.getObject().setStudyList(studyListForUser); } containerForm = new ContainerForm("containerForm", cpModel); containerForm.add(initialiseFeedBackPanel()); containerForm.add(initialiseSearchResults(modalWindow, gender, relatives)); containerForm.add(initialiseSearchPanel()); arkCrudContainerVO.getSearchPanelContainer().get("searchComponentPanel").get("searchForm").get("genderType") .setEnabled(false); arkCrudContainerVO.getSearchPanelContainer().get("searchComponentPanel").get("searchForm").get("study") .setEnabled(false); add(containerForm); } @SuppressWarnings("unchecked") protected void prerenderContextCheck() { // Get the Person in Context and determine the Person Type Long sessionPersonId = (Long) SecurityUtils.getSubject().getSession() .getAttribute(au.org.theark.core.Constants.PERSON_CONTEXT_ID); if ((sessionStudyId != null) && (sessionPersonId != null)) { String sessionPersonType = (String) SecurityUtils.getSubject().getSession() .getAttribute(au.org.theark.core.Constants.PERSON_TYPE); if (sessionPersonType.equals(au.org.theark.core.Constants.PERSON_CONTEXT_TYPE_SUBJECT)) { Person person; boolean contextLoaded = false; try { person = studyService.getPerson(sessionPersonId); SubjectVO subjectVO = new SubjectVO(); subjectVO.getLinkSubjectStudy().setPerson(person); // must // have // Person subjectVO.getLinkSubjectStudy().setStudy(study); // must // have // Study List<SubjectVO> subjectList = (List<SubjectVO>) iArkCommonService.getSubject(subjectVO); subjectList.get(0).setStudyList(cpModel.getObject().getStudyList()); containerForm.setModelObject(subjectList.get(0)); contextLoaded = true; } catch (EntityNotFoundException e) { log.error(e.getMessage()); } catch (ArkSystemException e) { log.error(e.getMessage()); } if (contextLoaded) { // Available/assigned child studies List<Study> availableChildStudies = new ArrayList<Study>(0); List<Study> selectedChildStudies = new ArrayList<Study>(0); if (containerForm.getModelObject().getLinkSubjectStudy().getStudy().getParentStudy() != null) { availableChildStudies = iStudyService.getChildStudyListOfParent( containerForm.getModelObject().getLinkSubjectStudy().getStudy()); selectedChildStudies = iArkCommonService.getAssignedChildStudyListForPerson( containerForm.getModelObject().getLinkSubjectStudy().getStudy(), containerForm.getModelObject().getLinkSubjectStudy().getPerson()); } containerForm.getModelObject().setAvailableChildStudies(availableChildStudies); containerForm.getModelObject().setSelectedChildStudies(selectedChildStudies); // Put into Detail View mode arkCrudContainerVO.getSearchPanelContainer().setVisible(false); arkCrudContainerVO.getSearchResultPanelContainer().setVisible(false); arkCrudContainerVO.getDetailPanelContainer().setVisible(true); arkCrudContainerVO.getDetailPanelFormContainer().setEnabled(false); arkCrudContainerVO.getEditButtonContainer().setVisible(false); } } } } protected WebMarkupContainer initialiseSearchPanel() { containerForm.getModelObject().getLinkSubjectStudy().setStudy(study); searchPanel = new SearchPanel("searchComponentPanel", feedBackPanel, pageableListView, arkCrudContainerVO, containerForm, arkContextMarkup, studyNameMarkup, studyLogoMarkup); searchPanel.initialisePanel(cpModel); arkCrudContainerVO.getSearchPanelContainer().add(searchPanel); return arkCrudContainerVO.getSearchPanelContainer(); } protected WebMarkupContainer initialiseDetailPanel() { detailPanel = new DetailPanel("detailPanel", feedBackPanel, arkContextMarkup, containerForm, arkCrudContainerVO, studyNameMarkup, studyLogoMarkup); detailPanel.initialisePanel(); arkCrudContainerVO.getDetailPanelContainer().add(detailPanel); return arkCrudContainerVO.getDetailPanelContainer(); } @SuppressWarnings("unchecked") protected WebMarkupContainer initialiseSearchResults() { searchResultsPanel = new SearchResultListPanel("searchResults", arkContextMarkup, containerForm, arkCrudContainerVO, studyNameMarkup, studyLogoMarkup); if (sessionStudyId != null) { LinkSubjectStudy linkSubjectStudy = new LinkSubjectStudy(); linkSubjectStudy.setStudy(study); // containerForm.getModelObject().setLinkSubjectStudy(linkSubjectStudy); } // Data providor to paginate resultList subjectProvider = new ArkDataProvider<SubjectVO, IArkCommonService>(iArkCommonService) { private static final long serialVersionUID = 1L; public int size() { return (int) service.getStudySubjectCount(model.getObject()); } public Iterator<SubjectVO> iterator(int first, int count) { List<SubjectVO> listSubjects = new ArrayList<SubjectVO>(); if (isActionPermitted()) { listSubjects = iArkCommonService.searchPageableSubjects(model.getObject(), first, count); } return listSubjects.iterator(); } }; TextField<OtherID> txtFld = ((TextField<OtherID>) containerForm .get("searchContainer:searchComponentPanel:searchForm:otherID")); String otherIDSearch = txtFld != null ? txtFld.getValue() : null; if (otherIDSearch != null) { OtherID o; o = new OtherID(); o.setOtherID(otherIDSearch); // List<OtherID> otherIDs = new ArrayList<OtherID>(); // otherIDs.add(o); cpModel.getObject().getLinkSubjectStudy().getPerson().getOtherIDs().clear();//setOtherIDs(otherIDs); cpModel.getObject().getLinkSubjectStudy().getPerson().getOtherIDs().add(o); } subjectProvider.setModel(this.cpModel); dataView = searchResultsPanel.buildDataView(subjectProvider); dataView.setItemsPerPage( iArkCommonService.getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue()); PagingNavigator pageNavigator = new PagingNavigator("navigator", dataView); resultsWmc.add(pageNavigator); List<IColumn<SubjectVO>> columns = new ArrayList<IColumn<SubjectVO>>(); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("SubjectUID"), "subjectUID")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Full Name"), "subjectFullName")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Preferred Name"), "linkSubjectStudy.person.preferredName")); columns.add(new ExportableDateColumn<SubjectVO>(Model.of("Date Of Birth"), "linkSubjectStudy.person.dateOfBirth", au.org.theark.core.Constants.DD_MM_YYYY)); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Vital Status"), "linkSubjectStudy.person.vitalStatus.name")); columns.add( new ExportableTextColumn<SubjectVO>(Model.of("Gender"), "linkSubjectStudy.person.genderType.name")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Subject Status"), "linkSubjectStudy.subjectStatus.name")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Consent Status"), "linkSubjectStudy.consentStatus.name")); DataTable table = new DataTable("datatable", columns, dataView.getDataProvider(), iArkCommonService.getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue()); List<String> headers = new ArrayList<String>(0); headers.add("SubjectUID"); headers.add("Full Name"); headers.add("Preferred Name"); headers.add("Date of Birth"); headers.add("Vital Status"); headers.add("Gender"); headers.add("Subject Status"); headers.add("Consent Status"); String filename = study.getName() + "_subjects"; RepeatingView toolbars = new RepeatingView("toolbars"); ExportToolbar<String> exportToolBar = new ExportToolbar<String>(table, headers, filename); toolbars.add(new Component[] { exportToolBar }); resultsWmc.add(toolbars); resultsWmc.add(dataView); searchResultsPanel.add(resultsWmc); arkCrudContainerVO.getSearchResultPanelContainer().add(searchResultsPanel); return arkCrudContainerVO.getSearchResultPanelContainer(); } @SuppressWarnings("unchecked") protected WebMarkupContainer initialiseSearchResults(AbstractDetailModalWindow modalWindow, final String gender, final List<RelationshipVo> relatives) { searchResultsPanel = new SearchResultListPanel("searchResults", arkContextMarkup, containerForm, arkCrudContainerVO, studyNameMarkup, studyLogoMarkup); searchResultsPanel.setOutputMarkupId(true); if (sessionStudyId != null) { LinkSubjectStudy linkSubjectStudy = new LinkSubjectStudy(); linkSubjectStudy.setStudy(study); // containerForm.getModelObject().setLinkSubjectStudy(linkSubjectStudy); } // Data providor to paginate resultList subjectProvider = new ArkDataProvider<SubjectVO, IArkCommonService>(iArkCommonService) { private static final long serialVersionUID = 1L; private GenderType genderType; { Collection<GenderType> genderTypes = service.getGenderTypes(); for (GenderType type : genderTypes) { if (gender.equalsIgnoreCase(type.getName())) { this.genderType = type; break; } } } public int size() { String subjectUID = (String) SecurityUtils.getSubject().getSession() .getAttribute(au.org.theark.core.Constants.SUBJECTUID); model.getObject().getRelativeUIDs().add(subjectUID); // TODO comment this block to check inbred relatives Boolean inbreedAllowed = (Boolean) SecurityUtils.getSubject().getSession() .getAttribute(Constants.INBREED_ALLOWED); if (BooleanUtils.isNotTrue(inbreedAllowed)) { for (RelationshipVo relationshipVo : relatives) { model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId()); } } else { List<RelationshipVo> childRelatives = iStudyService.getSubjectChildren(subjectUID, sessionStudyId); for (RelationshipVo relationshipVo : childRelatives) { model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId()); } } model.getObject().getLinkSubjectStudy().getPerson().setGenderType(genderType); return (int) service.getStudySubjectCount(model.getObject()); } public Iterator<SubjectVO> iterator(int first, int count) { List<SubjectVO> listSubjects = new ArrayList<SubjectVO>(); if (isActionPermitted()) { model.getObject().getLinkSubjectStudy().getPerson().setGenderType(genderType); String subjectUID = (String) SecurityUtils.getSubject().getSession() .getAttribute(au.org.theark.core.Constants.SUBJECTUID); model.getObject().getRelativeUIDs().add(subjectUID); // TODO comment this block to check inbred relatives Boolean inbreedAllowed = (Boolean) SecurityUtils.getSubject().getSession() .getAttribute(Constants.INBREED_ALLOWED); if (BooleanUtils.isNotTrue(inbreedAllowed)) { for (RelationshipVo relationshipVo : relatives) { model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId()); } } else { List<RelationshipVo> childRelatives = iStudyService.getSubjectChildren(subjectUID, sessionStudyId); for (RelationshipVo relationshipVo : childRelatives) { model.getObject().getRelativeUIDs().add(relationshipVo.getIndividualId()); } } listSubjects = iArkCommonService.searchPageableSubjects(model.getObject(), first, count); } return listSubjects.iterator(); } }; subjectProvider.setModel(this.cpModel); dataView = searchResultsPanel.buildDataView(subjectProvider, modalWindow, relatives, feedBackPanel); dataView.setItemsPerPage( iArkCommonService.getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue()); AjaxPagingNavigator pageNavigator = new AjaxPagingNavigator("navigator", dataView) { private static final long serialVersionUID = 1L; @Override protected void onAjaxEvent(AjaxRequestTarget target) { target.add(searchResultsPanel); } }; resultsWmc.add(pageNavigator); List<IColumn<SubjectVO>> columns = new ArrayList<IColumn<SubjectVO>>(); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("SubjectUID"), "subjectUID")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Full Name"), "subjectFullName")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Preferred Name"), "linkSubjectStudy.person.preferredName")); columns.add(new ExportableDateColumn<SubjectVO>(Model.of("Date Of Birth"), "linkSubjectStudy.person.dateOfBirth", au.org.theark.core.Constants.DD_MM_YYYY)); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Vital Status"), "linkSubjectStudy.person.vitalStatus.name")); columns.add( new ExportableTextColumn<SubjectVO>(Model.of("Gender"), "linkSubjectStudy.person.genderType.name")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Subject Status"), "linkSubjectStudy.subjectStatus.name")); columns.add(new ExportableTextColumn<SubjectVO>(Model.of("Consent Status"), "linkSubjectStudy.consentStatus.name")); DataTable table = new DataTable("datatable", columns, dataView.getDataProvider(), iArkCommonService.getUserConfig(au.org.theark.core.Constants.CONFIG_ROWS_PER_PAGE).getIntValue()); List<String> headers = new ArrayList<String>(0); headers.add("SubjectUID"); headers.add("Full Name"); headers.add("Preferred Name"); headers.add("Date of Birth"); headers.add("Vital Status"); headers.add("Gender"); headers.add("Subject Status"); headers.add("Consent Status"); String filename = study.getName() + "_subjects"; RepeatingView toolbars = new RepeatingView("toolbars"); ExportToolbar<String> exportToolBar = new ExportToolbar<String>(table, headers, filename); toolbars.add(new Component[] { exportToolBar }); resultsWmc.add(toolbars); resultsWmc.add(dataView); searchResultsPanel.add(resultsWmc); arkCrudContainerVO.getSearchResultPanelContainer().add(searchResultsPanel); return arkCrudContainerVO.getSearchResultPanelContainer(); } }