OCV_Threshold.java Source code

Introduction

Here is the source code for OCV_Threshold.java

Source

import ij.*;
import ij.IJ;
import ij.gui.DialogListener;
import ij.gui.GenericDialog;
import ij.plugin.filter.PlugInFilterRunner;
import ij.process.ImageProcessor;
import java.awt.AWTEvent;
import org.opencv.core.CvType;
import org.opencv.core.Mat;
import org.opencv.imgproc.Imgproc;

/*
 * The MIT License
 *
 * Copyright 2016 Takehito Nishida.
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 * THE SOFTWARE.
 */

/**
 * threshold (OpenCV3.1).
 */
public class OCV_Threshold implements ij.plugin.filter.ExtendedPlugInFilter, DialogListener {
    // constant var.
    private static final int FLAGS = DOES_8G | DOES_32 | KEEP_PREVIEW;
    private static final int[] INT_TYPE = { Imgproc.THRESH_BINARY, Imgproc.THRESH_BINARY_INV, Imgproc.THRESH_TRUNC,
            Imgproc.THRESH_TOZERO, Imgproc.THRESH_TOZERO_INV, Imgproc.THRESH_OTSU,
            Imgproc.THRESH_OTSU + Imgproc.THRESH_BINARY_INV, Imgproc.THRESH_TRIANGLE };
    private static final String[] STR_TYPE = { "THRESH_BINARY", "THRESH_BINARY_INV", "THRESH_TRUNC",
            "THRESH_TOZERO", "THRESH_TOZERO_INV", "THRESH_OTSU", "THRESH_OTSU_INV", "THRESH_TRIANGLE" };

    // staic var.
    private static double thresh = 125;
    private static double maxVal = 255.0;
    private static int idxType = 0;

    @Override
    public int showDialog(ImagePlus imp, String command, PlugInFilterRunner pfr) {
        GenericDialog gd = new GenericDialog(command.trim() + " ...");

        gd.addNumericField("thresh", thresh, 4);
        gd.addNumericField("maxval", maxVal, 4);
        gd.addChoice("adaptiveMethod", STR_TYPE, STR_TYPE[idxType]);
        gd.addPreviewCheckbox(pfr);
        gd.addDialogListener(this);

        gd.showDialog();

        if (gd.wasCanceled()) {
            return DONE;
        } else {
            return IJ.setupDialog(imp, FLAGS);
        }
    }

    @Override
    public boolean dialogItemChanged(GenericDialog gd, AWTEvent awte) {
        thresh = (double) gd.getNextNumber();
        maxVal = (double) gd.getNextNumber();
        idxType = (int) gd.getNextChoiceIndex();

        if (Double.isNaN(thresh) || Double.isNaN(maxVal)) {
            IJ.showStatus("ERR : NaN");
            return false;
        }
        if (thresh < 0) {
            IJ.showStatus("'0 <= thresh' is necessary.");
            return false;
        }
        if (maxVal <= 0) {
            IJ.showStatus("'0 < maxValue' is necessary.");
            return false;
        }

        IJ.showStatus("OCV_Threshold");
        return true;
    }

    @Override
    public void setNPasses(int nPasses) {
        // do nothing
    }

    @Override
    public int setup(String arg, ImagePlus imp) {
        if (!OCV__LoadLibrary.isLoad()) {
            IJ.error("Library is not loaded.");
            return DONE;
        }

        if (imp == null) {
            IJ.noImage();
            return DONE;
        } else {
            return FLAGS;
        }
    }

    @Override
    public void run(ImageProcessor ip) {
        int imw = ip.getWidth();
        int imh = ip.getHeight();

        if (ip.getBitDepth() == 8) {
            // srcdst
            byte[] srcdst_bytes = (byte[]) ip.getPixels();

            // mat
            Mat src_mat = new Mat(imh, imw, CvType.CV_8UC1);
            Mat dst_mat = new Mat(imh, imw, CvType.CV_8UC1);

            // run
            src_mat.put(0, 0, srcdst_bytes);
            Imgproc.threshold(src_mat, dst_mat, thresh, maxVal, INT_TYPE[idxType]);
            dst_mat.get(0, 0, srcdst_bytes);
        } else if (ip.getBitDepth() == 32) {
            // srcdst
            float[] srcdst_floats = (float[]) ip.getPixels();

            // mat
            Mat src_mat = new Mat(imh, imw, CvType.CV_32F);
            Mat dst_mat = new Mat(imh, imw, CvType.CV_32F);

            // run
            src_mat.put(0, 0, srcdst_floats);
            Imgproc.threshold(src_mat, dst_mat, thresh, maxVal, INT_TYPE[idxType]);
            dst_mat.get(0, 0, srcdst_floats);
        } else {
            IJ.error("Wrong image format");
        }
    }
}