List of usage examples for weka.gui GenericObjectEditor GenericObjectEditor
public GenericObjectEditor()
From source file:meka.gui.goe.GenericObjectEditorDialog.java
License:Open Source License
/** * For initializing members./*from w ww . j ava 2 s.c o m*/ */ @Override protected void initialize() { super.initialize(); m_Editor = new GenericObjectEditor(); m_Current = null; }
From source file:org.knime.knip.suise.node.pixclassmodel.DialogComponentWekaClassifier.java
License:Open Source License
/** * @param model//from w w w .java 2 s . c om */ public DialogComponentWekaClassifier(SettingsModelWekaClassifier model, String label) { super(model); // Add Weka panel for selecting the classifier and its options m_ClassifierEditor = new GenericObjectEditor(); PropertyPanel m_CEPanel = new PropertyPanel(m_ClassifierEditor); m_ClassifierEditor.setClassType(Classifier.class); JPanel panel = new JPanel(new FlowLayout()); panel.add(new JLabel(label)); panel.add(m_CEPanel); // add classifier editor panel getComponentPanel().add(panel); }
From source file:sirius.trainer.step3.SelectFeaturePane.java
License:Open Source License
public SelectFeaturePane(JInternalFrame parent, JTabbedPane tabbedPane, ApplicationData applicationData) { this.parent = parent; this.applicationData = applicationData; this.statusPane = applicationData.getStatusPane(); this.tabbedPane = tabbedPane; JPanel north = new JPanel(new BorderLayout()); north.setBorder(BorderFactory.createTitledBorder("Filter Features")); applyFilterButton = new JButton("Apply Filter"); applyFilterButton.addActionListener(this); filterEditor = new GenericObjectEditor(); /** Filter configuration */ PropertyPanel filterPanel = new PropertyPanel(filterEditor); filterEditor.setClassType(weka.filters.Filter.class); north.add(filterPanel, BorderLayout.CENTER); undoButton = new JButton("Undo (Remove/Filter)"); undoButton.setEnabled(false);//from w ww . j ava2s .c om undoButton.addActionListener(this); JPanel filterButtonsPanel = new JPanel(new GridLayout(1, 2)); filterButtonsPanel.add(applyFilterButton); north.add(filterButtonsPanel, BorderLayout.EAST); JPanel center = new JPanel(new GridLayout(1, 2)); //center_left JPanel center_left = new JPanel(new BorderLayout()); JPanel instancesSummaryPanel = new JPanel(new GridLayout(1, 2)); instancesSummaryPanel.setBorder(BorderFactory.createTitledBorder("Current File")); numberOfInstancesLabel = new JLabel(" Instances: "); numberOfFeaturesLabel = new JLabel("Features: "); instancesSummaryPanel.add(numberOfInstancesLabel); instancesSummaryPanel.add(numberOfFeaturesLabel); JPanel center_left_center = new JPanel(new BorderLayout()); center_left_center.setBorder(BorderFactory.createTitledBorder("Features")); myAttributeSelectionPanel = new MyAttributeSelectionPanel(); center_left_center.add(myAttributeSelectionPanel, BorderLayout.CENTER); JPanel removeAttributePanel = new JPanel(new GridLayout(1, 1)); removeAttributePanel.setBorder(BorderFactory.createEmptyBorder(10, 5, 10, 5)); removeAttributeButton = new JButton("Remove Marked Features"); removeAttributeButton.setEnabled(false); removeAttributeButton.setToolTipText("Remove selected attributes."); removeAttributeButton.addActionListener(this); removeAttributePanel.add(removeAttributeButton); center_left_center.add(removeAttributePanel, BorderLayout.SOUTH); center_left.add(instancesSummaryPanel, BorderLayout.NORTH); center_left.add(center_left_center, BorderLayout.CENTER); this.saveArffButton = new JButton("Save as Arff (All)"); this.saveArffButton.addActionListener(this); this.saveArffNegOnlyButton = new JButton("Save as Arff (-ve Only)"); this.saveArffNegOnlyButton.addActionListener(this); this.saveArffPosOnlyButton = new JButton("Save as Arff (+ve Only)"); this.saveArffPosOnlyButton.addActionListener(this); JPanel outputPanel = new JPanel(new GridLayout(1, 3)); outputPanel.setBorder(BorderFactory.createTitledBorder("Output")); outputPanel.add(this.saveArffButton); outputPanel.add(this.saveArffPosOnlyButton); outputPanel.add(this.saveArffNegOnlyButton); center_left.add(outputPanel, BorderLayout.SOUTH); center.add(center_left); JPanel center_right = new JPanel(new GridLayout(2, 1)); attributeSummaryPanel = new AttributeSummaryPanel(); attributeSummaryPanel.setBorder(BorderFactory.createTitledBorder("Selected Features")); attributeVisualizePanel = new AttributeVisualizationPanel(); center_right.add(attributeSummaryPanel); center_right.add(attributeVisualizePanel); center.add(center_right); GridBagLayout gridbag = new GridBagLayout(); GridBagConstraints c = new GridBagConstraints(); JPanel south = new JPanel(gridbag); south.setBorder(BorderFactory.createEmptyBorder(10, 5, 0, 5)); previousStepButton = new JButton("<<< BACK"); previousStepButton.addActionListener(this); c.fill = GridBagConstraints.BOTH; c.weightx = 1.0; c.weighty = 1.0; gridbag.setConstraints(previousStepButton, c); c.weightx = 3.0; c.weighty = 1.0; gridbag.setConstraints(this.undoButton, c); nextStepButton = new JButton("NEXT >>>"); nextStepButton.addActionListener(this); c.fill = GridBagConstraints.BOTH; c.weightx = 1.0; c.weighty = 1.0; gridbag.setConstraints(nextStepButton, c); south.add(previousStepButton); south.add(this.undoButton); south.add(nextStepButton); setLayout(new BorderLayout()); add(center, BorderLayout.CENTER); add(north, BorderLayout.NORTH); add(south, BorderLayout.SOUTH); myAttributeSelectionPanel.getSelectionModel().addListSelectionListener(new ListSelectionListener() { public void valueChanged(ListSelectionEvent e) { if (!e.getValueIsAdjusting()) { ListSelectionModel lm = (ListSelectionModel) e.getSource(); for (int i = e.getFirstIndex(); i <= e.getLastIndex(); i++) { if (lm.isSelectedIndex(i)) { attributeSummaryPanel.setAttribute(i); attributeVisualizePanel.setAttribute(i); break; } } } } }); }
From source file:trainableSegmentation.Weka_Segmentation.java
License:GNU General Public License
/** * Show advanced settings dialog/* ww w.ja va 2s .co m*/ * * @return false when canceled */ public boolean showSettingsDialog() { GenericDialogPlus gd = new GenericDialogPlus("Segmentation settings"); final boolean[] oldEnableFeatures = wekaSegmentation.getEnabledFeatures(); gd.addMessage("Training features:"); final int rows = (int) Math.round(FeatureStack.availableFeatures.length / 2.0); gd.addCheckboxGroup(rows, 2, FeatureStack.availableFeatures, oldEnableFeatures); if (wekaSegmentation.getLoadedTrainingData() != null) { final Vector<Checkbox> v = gd.getCheckboxes(); for (Checkbox c : v) c.setEnabled(false); gd.addMessage("WARNING: no features are selectable while using loaded data"); } // Expected membrane thickness gd.addNumericField("Membrane thickness:", wekaSegmentation.getMembraneThickness(), 0); // Membrane patch size gd.addNumericField("Membrane patch size:", wekaSegmentation.getMembranePatchSize(), 0); // Field of view gd.addNumericField("Minimum sigma:", wekaSegmentation.getMinimumSigma(), 1); gd.addNumericField("Maximum sigma:", wekaSegmentation.getMaximumSigma(), 1); if (wekaSegmentation.getLoadedTrainingData() != null) { for (int i = 0; i < 4; i++) ((TextField) gd.getNumericFields().get(i)).setEnabled(false); } gd.addMessage("Classifier options:"); // Add Weka panel for selecting the classifier and its options GenericObjectEditor m_ClassifierEditor = new GenericObjectEditor(); PropertyPanel m_CEPanel = new PropertyPanel(m_ClassifierEditor); m_ClassifierEditor.setClassType(Classifier.class); m_ClassifierEditor.setValue(wekaSegmentation.getClassifier()); // add classifier editor panel gd.addComponent(m_CEPanel, GridBagConstraints.HORIZONTAL, 1); Object c = (Object) m_ClassifierEditor.getValue(); String originalOptions = ""; String originalClassifierName = c.getClass().getName(); if (c instanceof OptionHandler) { originalOptions = Utils.joinOptions(((OptionHandler) c).getOptions()); } gd.addMessage("Class names:"); for (int i = 0; i < wekaSegmentation.getNumOfClasses(); i++) gd.addStringField("Class " + (i + 1), wekaSegmentation.getClassLabel(i), 15); gd.addMessage("Advanced options:"); gd.addCheckbox("Homogenize classes", wekaSegmentation.doHomogenizeClasses()); gd.addButton("Save feature stack", new SaveFeatureStackButtonListener( "Select location to save feature stack", wekaSegmentation.getFeatureStackArray())); gd.addSlider("Result overlay opacity", 0, 100, win.overlayOpacity); gd.addHelp("http://fiji.sc/wiki/Trainable_Segmentation_Plugin"); gd.showDialog(); if (gd.wasCanceled()) return false; final int numOfFeatures = FeatureStack.availableFeatures.length; final boolean[] newEnableFeatures = new boolean[numOfFeatures]; boolean featuresChanged = false; // Read checked features and check if any of them changed for (int i = 0; i < numOfFeatures; i++) { newEnableFeatures[i] = gd.getNextBoolean(); if (newEnableFeatures[i] != oldEnableFeatures[i]) { featuresChanged = true; // Macro recording record(SET_FEATURE, new String[] { FeatureStack.availableFeatures[i] + "=" + newEnableFeatures[i] }); } } if (featuresChanged) { wekaSegmentation.setEnabledFeatures(newEnableFeatures); } // Membrane thickness final int newThickness = (int) gd.getNextNumber(); if (newThickness != wekaSegmentation.getMembraneThickness()) { featuresChanged = true; wekaSegmentation.setMembraneThickness(newThickness); // Macro recording record(SET_MEMBRANE_THICKNESS, new String[] { Integer.toString(newThickness) }); } // Membrane patch size final int newPatch = (int) gd.getNextNumber(); if (newPatch != wekaSegmentation.getMembranePatchSize()) { featuresChanged = true; // Macro recording record(SET_MEMBRANE_PATCH, new String[] { Integer.toString(newPatch) }); wekaSegmentation.setMembranePatchSize(newPatch); } // Field of view (minimum and maximum sigma/radius for the filters) final float newMinSigma = (float) gd.getNextNumber(); if (newMinSigma != wekaSegmentation.getMinimumSigma() && newMinSigma > 0) { featuresChanged = true; // Macro recording record(SET_MINIMUM_SIGMA, new String[] { Float.toString(newMinSigma) }); wekaSegmentation.setMinimumSigma(newMinSigma); } final float newMaxSigma = (float) gd.getNextNumber(); if (newMaxSigma != wekaSegmentation.getMaximumSigma() && newMaxSigma >= wekaSegmentation.getMinimumSigma()) { featuresChanged = true; // Macro recording record(SET_MAXIMUM_SIGMA, new String[] { Float.toString(newMaxSigma) }); wekaSegmentation.setMaximumSigma(newMaxSigma); } if (wekaSegmentation.getMinimumSigma() > wekaSegmentation.getMaximumSigma()) { IJ.error("Error in the field of view parameters: they will be reset to default values"); wekaSegmentation.setMinimumSigma(0f); wekaSegmentation.setMaximumSigma(16f); } // Set classifier and options c = (Object) m_ClassifierEditor.getValue(); String options = ""; final String[] optionsArray = ((OptionHandler) c).getOptions(); if (c instanceof OptionHandler) { options = Utils.joinOptions(optionsArray); } //System.out.println("Classifier after choosing: " + c.getClass().getName() + " " + options); if (originalClassifierName.equals(c.getClass().getName()) == false || originalOptions.equals(options) == false) { AbstractClassifier cls; try { cls = (AbstractClassifier) (c.getClass().newInstance()); cls.setOptions(optionsArray); } catch (Exception ex) { ex.printStackTrace(); return false; } wekaSegmentation.setClassifier(cls); // Macro recording record(SET_CLASSIFIER, new String[] { c.getClass().getName(), options }); IJ.log("Current classifier: " + c.getClass().getName() + " " + options); } boolean classNameChanged = false; for (int i = 0; i < wekaSegmentation.getNumOfClasses(); i++) { String s = gd.getNextString(); if (null == s || 0 == s.length()) { IJ.log("Invalid name for class " + (i + 1)); continue; } s = s.trim(); if (!s.equals(wekaSegmentation.getClassLabel(i))) { if (0 == s.toLowerCase().indexOf("add to ")) s = s.substring(7); wekaSegmentation.setClassLabel(i, s); classNameChanged = true; addExampleButton[i].setText("Add to " + s); // Macro recording record(CHANGE_CLASS_NAME, new String[] { Integer.toString(i), s }); } } // Update flag to homogenize number of class instances final boolean homogenizeClasses = gd.getNextBoolean(); if (wekaSegmentation.doHomogenizeClasses() != homogenizeClasses) { wekaSegmentation.setDoHomogenizeClasses(homogenizeClasses); // Macro recording record(SET_HOMOGENIZATION, new String[] { Boolean.toString(homogenizeClasses) }); } // Update result overlay alpha final int newOpacity = (int) gd.getNextNumber(); if (newOpacity != win.overlayOpacity) { win.overlayOpacity = newOpacity; win.overlayAlpha = AlphaComposite.getInstance(AlphaComposite.SRC_OVER, win.overlayOpacity / 100f); win.resultOverlay.setComposite(win.overlayAlpha); // Macro recording record(SET_OPACITY, new String[] { Integer.toString(win.overlayOpacity) }); if (showColorOverlay) displayImage.updateAndDraw(); } // If there is a change in the class names, // the data set (instances) must be updated. if (classNameChanged) { // Pack window to update buttons win.pack(); } // Update feature stack if necessary if (featuresChanged) { // Force features to be updated wekaSegmentation.setFeaturesDirty(); } else // This checks if the feature stacks were updated while using the save feature stack button if (wekaSegmentation.getFeatureStackArray().isEmpty() == false && wekaSegmentation.getFeatureStackArray().getReferenceSliceIndex() != -1) wekaSegmentation.setUpdateFeatures(false); return true; }