Example usage for weka.clusterers FarthestFirst setOptions

Introduction

In this page you can find the example usage for weka.clusterers FarthestFirst setOptions.

Prototype

@Override
public void setOptions(String[] options) throws Exception 

Source Link

Document

Parses a given list of options.

Usage

From source file:net.sf.mzmine.modules.peaklistmethods.dataanalysis.clustering.farthestfirst.FarthestFirstClusterer.java

License:Open Source License

@Override
public ClusteringResult performClustering(Instances dataset, ParameterSet parameters) {

    List<Integer> clusters = new ArrayList<Integer>();
    String[] options = new String[2];
    FarthestFirst clusterer = new FarthestFirst();

    int numberOfGroups = parameters.getParameter(FarthestFirstClustererParameters.numberOfGroups).getValue();
    options[0] = "-N";
    options[1] = String.valueOf(numberOfGroups);

    try {//from w  w  w  .  j  a  v a2s. c o m
        clusterer.setOptions(options);
        clusterer.buildClusterer(dataset);
        Enumeration<?> e = dataset.enumerateInstances();
        while (e.hasMoreElements()) {
            clusters.add(clusterer.clusterInstance((Instance) e.nextElement()));
        }
        ClusteringResult result = new ClusteringResult(clusters, null, clusterer.numberOfClusters(),
                parameters.getParameter(EMClustererParameters.visualization).getValue());
        return result;
    } catch (Exception ex) {
        logger.log(Level.SEVERE, null, ex);
        return null;
    }
}

---