Example usage for weka.classifiers Evaluation truePositiveRate

Introduction

In this page you can find the example usage for weka.classifiers Evaluation truePositiveRate.

Prototype

public double truePositiveRate(int classIndex) 

Source Link

Document

Calculate the true positive rate with respect to a particular class.

Usage

From source file:adams.flow.core.EvaluationHelper.java

License:Open Source License

/**
 * Returns a statistical value from the evaluation object.
 *
 * @param eval   the evaluation object to get the value from
 * @param statistic   the type of value to return
 * @param classIndex   the class label index, for statistics like AUC
 * @return      the determined value, Double.NaN if not found
 * @throws Exception   if evaluation fails
 *//*from w  w  w  .ja v  a2s. c om*/
public static double getValue(Evaluation eval, EvaluationStatistic statistic, int classIndex) throws Exception {
    switch (statistic) {
    case NUMBER_CORRECT:
        return eval.correct();
    case NUMBER_INCORRECT:
        return eval.incorrect();
    case NUMBER_UNCLASSIFIED:
        return eval.unclassified();
    case PERCENT_CORRECT:
        return eval.pctCorrect();
    case PERCENT_INCORRECT:
        return eval.pctIncorrect();
    case PERCENT_UNCLASSIFIED:
        return eval.pctUnclassified();
    case KAPPA_STATISTIC:
        return eval.kappa();
    case MEAN_ABSOLUTE_ERROR:
        return eval.meanAbsoluteError();
    case ROOT_MEAN_SQUARED_ERROR:
        return eval.rootMeanSquaredError();
    case RELATIVE_ABSOLUTE_ERROR:
        return eval.relativeAbsoluteError();
    case ROOT_RELATIVE_SQUARED_ERROR:
        return eval.rootRelativeSquaredError();
    case CORRELATION_COEFFICIENT:
        return eval.correlationCoefficient();
    case SF_PRIOR_ENTROPY:
        return eval.SFPriorEntropy();
    case SF_SCHEME_ENTROPY:
        return eval.SFSchemeEntropy();
    case SF_ENTROPY_GAIN:
        return eval.SFEntropyGain();
    case SF_MEAN_PRIOR_ENTROPY:
        return eval.SFMeanPriorEntropy();
    case SF_MEAN_SCHEME_ENTROPY:
        return eval.SFMeanSchemeEntropy();
    case SF_MEAN_ENTROPY_GAIN:
        return eval.SFMeanEntropyGain();
    case KB_INFORMATION:
        return eval.KBInformation();
    case KB_MEAN_INFORMATION:
        return eval.KBMeanInformation();
    case KB_RELATIVE_INFORMATION:
        return eval.KBRelativeInformation();
    case TRUE_POSITIVE_RATE:
        return eval.truePositiveRate(classIndex);
    case NUM_TRUE_POSITIVES:
        return eval.numTruePositives(classIndex);
    case FALSE_POSITIVE_RATE:
        return eval.falsePositiveRate(classIndex);
    case NUM_FALSE_POSITIVES:
        return eval.numFalsePositives(classIndex);
    case TRUE_NEGATIVE_RATE:
        return eval.trueNegativeRate(classIndex);
    case NUM_TRUE_NEGATIVES:
        return eval.numTrueNegatives(classIndex);
    case FALSE_NEGATIVE_RATE:
        return eval.falseNegativeRate(classIndex);
    case NUM_FALSE_NEGATIVES:
        return eval.numFalseNegatives(classIndex);
    case IR_PRECISION:
        return eval.precision(classIndex);
    case IR_RECALL:
        return eval.recall(classIndex);
    case F_MEASURE:
        return eval.fMeasure(classIndex);
    case MATTHEWS_CORRELATION_COEFFICIENT:
        return eval.matthewsCorrelationCoefficient(classIndex);
    case AREA_UNDER_ROC:
        return eval.areaUnderROC(classIndex);
    case AREA_UNDER_PRC:
        return eval.areaUnderPRC(classIndex);
    case WEIGHTED_TRUE_POSITIVE_RATE:
        return eval.weightedTruePositiveRate();
    case WEIGHTED_FALSE_POSITIVE_RATE:
        return eval.weightedFalsePositiveRate();
    case WEIGHTED_TRUE_NEGATIVE_RATE:
        return eval.weightedTrueNegativeRate();
    case WEIGHTED_FALSE_NEGATIVE_RATE:
        return eval.weightedFalseNegativeRate();
    case WEIGHTED_IR_PRECISION:
        return eval.weightedPrecision();
    case WEIGHTED_IR_RECALL:
        return eval.weightedRecall();
    case WEIGHTED_F_MEASURE:
        return eval.weightedFMeasure();
    case WEIGHTED_MATTHEWS_CORRELATION_COEFFICIENT:
        return eval.weightedMatthewsCorrelation();
    case WEIGHTED_AREA_UNDER_ROC:
        return eval.weightedAreaUnderROC();
    case WEIGHTED_AREA_UNDER_PRC:
        return eval.weightedAreaUnderPRC();
    case UNWEIGHTED_MACRO_F_MEASURE:
        return eval.unweightedMacroFmeasure();
    case UNWEIGHTED_MICRO_F_MEASURE:
        return eval.unweightedMicroFmeasure();
    case BIAS:
        return eval.getPluginMetric(Bias.class.getName()).getStatistic(Bias.NAME);
    case RSQUARED:
        return eval.getPluginMetric(RSquared.class.getName()).getStatistic(RSquared.NAME);
    case SDR:
        return eval.getPluginMetric(SDR.class.getName()).getStatistic(SDR.NAME);
    case RPD:
        return eval.getPluginMetric(RPD.class.getName()).getStatistic(RPD.NAME);
    default:
        throw new IllegalArgumentException("Unhandled statistic field: " + statistic);
    }
}

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From source file:algoritmogeneticocluster.Cromossomo.java

private double getMicroAverage(Evaluation eval, Instances data) {
    double TP = 0;
    double TP_plus_FP = 0;
    double TP_plus_FN = 0;
    double microPrecision;
    double microRecall;
    double microMeasure;

    for (int i = 0; i < data.numClasses(); i++) {
        TP += eval.truePositiveRate(i);
        TP_plus_FP += eval.truePositiveRate(i) + eval.falsePositiveRate(i);
        TP_plus_FN += eval.truePositiveRate(i) + eval.falseNegativeRate(i);
    }//w  w w  . j av  a 2s  .c  om
    microPrecision = TP / TP_plus_FP;
    microRecall = TP / TP_plus_FN;
    microMeasure = (microPrecision * microRecall * 2) / (microPrecision + microRecall);

    //System.out.println("microMeasure: " + microMeasure);
    return microMeasure;
}

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From source file:au.edu.usyd.it.yangpy.sampling.BPSO.java

License:Open Source License

/**
 * this method evaluate a classifier with 
 * the sampled data and internal test data
 * // ww w  . java 2  s  .  c  o  m
 * @param c   classifier
 * @param train   sampled set
 * @param test   internal test set
 * @return   evaluation results
 */
public double classify(Classifier c, Instances train, Instances test) {
    double AUC = 0;
    double FM = 0;
    double GM = 0;

    try {
        c.buildClassifier(train);

        // evaluate classifier
        Evaluation eval = new Evaluation(train);
        eval.evaluateModel(c, test);

        AUC = eval.areaUnderROC(1);
        FM = eval.fMeasure(1);
        GM = eval.truePositiveRate(0);
        GM *= eval.truePositiveRate(1);
        GM = Math.sqrt(GM);

    } catch (IOException ioe) {
        ioe.printStackTrace();
    } catch (Exception e) {
        e.printStackTrace();
    }

    double mean = (AUC + FM + GM) / 3;

    if (verbose == true) {
        System.out.print("AUC: " + dec.format(AUC) + " ");
        System.out.print("FM: " + dec.format(FM) + " ");
        System.out.println("GM: " + dec.format(GM));
        System.out.println("      \\       |       /  ");
        System.out.println("        Mean: " + dec.format(mean));
    }

    return mean;
}

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