List of usage examples for weka.classifiers.evaluation Prediction predicted
double predicted();
From source file:adams.flow.transformer.WekaAccumulatedError.java
License:Open Source License
/** * Returns the generated token.// w w w . j a v a2 s. c om * * @return the generated token */ @Override public Token output() { Token result; Prediction pred; double error; pred = m_Predictions.get(0).getPrediction(); error = Math.sqrt(Math.pow((pred.actual() - pred.predicted()), 2)) / Math.sqrt(m_NumPredictions); m_AccumulatdError += error; m_Predictions.remove(0); m_InputToken = null; result = new Token(new SequencePlotterContainer(m_PlotName, (double) (m_NumPredictions - m_Predictions.size()), m_AccumulatdError)); return result; }
From source file:adams.flow.transformer.WekaPredictionsToInstances.java
License:Open Source License
/** * Executes the flow item./*from w w w. j a v a 2 s . c om*/ * * @return null if everything is fine, otherwise error message */ @Override protected String doExecute() { String result; Evaluation eval; int i; int n; int indexErr; int indexProb; int indexDist; int indexWeight; boolean nominal; Instances header; ArrayList<Attribute> atts; ArrayList<String> values; ArrayList<Prediction> predictions; Prediction pred; double[] vals; Instances data; Instances testData; int[] indices; result = null; if (m_InputToken.getPayload() instanceof WekaEvaluationContainer) { eval = (Evaluation) ((WekaEvaluationContainer) m_InputToken.getPayload()) .getValue(WekaEvaluationContainer.VALUE_EVALUATION); indices = (int[]) ((WekaEvaluationContainer) m_InputToken.getPayload()) .getValue(WekaEvaluationContainer.VALUE_ORIGINALINDICES); testData = (Instances) ((WekaEvaluationContainer) m_InputToken.getPayload()) .getValue(WekaEvaluationContainer.VALUE_TESTDATA); } else { eval = (Evaluation) m_InputToken.getPayload(); indices = null; testData = null; } header = eval.getHeader(); nominal = header.classAttribute().isNominal(); predictions = eval.predictions(); if (predictions != null) { // create header atts = new ArrayList<>(); // actual if (nominal && m_AddLabelIndex) { values = new ArrayList<>(); for (i = 0; i < header.classAttribute().numValues(); i++) values.add((i + 1) + ":" + header.classAttribute().value(i)); atts.add(new Attribute(m_MeasuresPrefix + "Actual", values)); } else { atts.add(header.classAttribute().copy(m_MeasuresPrefix + "Actual")); } // predicted if (nominal && m_AddLabelIndex) { values = new ArrayList<>(); for (i = 0; i < header.classAttribute().numValues(); i++) values.add((i + 1) + ":" + header.classAttribute().value(i)); atts.add(new Attribute(m_MeasuresPrefix + "Predicted", values)); } else { atts.add(header.classAttribute().copy(m_MeasuresPrefix + "Predicted")); } // error indexErr = -1; if (m_ShowError) { indexErr = atts.size(); if (nominal) { values = new ArrayList<>(); values.add("n"); values.add("y"); atts.add(new Attribute(m_MeasuresPrefix + "Error", values)); } else { atts.add(new Attribute(m_MeasuresPrefix + "Error")); } } // probability indexProb = -1; if (m_ShowProbability && nominal) { indexProb = atts.size(); atts.add(new Attribute(m_MeasuresPrefix + "Probability")); } // distribution indexDist = -1; if (m_ShowDistribution && nominal) { indexDist = atts.size(); for (n = 0; n < header.classAttribute().numValues(); n++) atts.add(new Attribute( m_MeasuresPrefix + "Distribution (" + header.classAttribute().value(n) + ")")); } // weight indexWeight = -1; if (m_ShowWeight) { indexWeight = atts.size(); atts.add(new Attribute(m_MeasuresPrefix + "Weight")); } data = new Instances("Predictions", atts, predictions.size()); data.setClassIndex(1); // predicted // add data if ((indices != null) && m_UseOriginalIndices) predictions = CrossValidationHelper.alignPredictions(predictions, indices); for (i = 0; i < predictions.size(); i++) { pred = predictions.get(i); vals = new double[data.numAttributes()]; // actual vals[0] = pred.actual(); // predicted vals[1] = pred.predicted(); // error if (m_ShowError) { if (nominal) { vals[indexErr] = ((pred.actual() != pred.predicted()) ? 1.0 : 0.0); } else { if (m_UseAbsoluteError) vals[indexErr] = Math.abs(pred.actual() - pred.predicted()); else vals[indexErr] = pred.actual() - pred.predicted(); } } // probability if (m_ShowProbability && nominal) { vals[indexProb] = StatUtils.max(((NominalPrediction) pred).distribution()); } // distribution if (m_ShowDistribution && nominal) { for (n = 0; n < header.classAttribute().numValues(); n++) vals[indexDist + n] = ((NominalPrediction) pred).distribution()[n]; } // weight if (m_ShowWeight) { vals[indexWeight] = pred.weight(); } // add row data.add(new DenseInstance(1.0, vals)); } // add test data? if ((testData != null) && !m_TestAttributes.isEmpty()) { testData = filterTestData(testData); if (testData != null) data = Instances.mergeInstances(data, testData); } // generate output token m_OutputToken = new Token(data); } else { getLogger().severe("No predictions available from Evaluation object!"); } return result; }
From source file:adams.flow.transformer.WekaPredictionsToSpreadSheet.java
License:Open Source License
/** * Executes the flow item.//from ww w . ja v a 2s .co m * * @return null if everything is fine, otherwise error message */ @Override protected String doExecute() { String result; Evaluation eval; int i; int n; int indexErr; int indexProb; int indexDist; int indexWeight; boolean nominal; Instances header; ArrayList<Prediction> predictions; Prediction pred; SpreadSheet data; Instances testData; InstancesView testView; Row row; int[] indices; result = null; if (m_InputToken.getPayload() instanceof WekaEvaluationContainer) { eval = (Evaluation) ((WekaEvaluationContainer) m_InputToken.getPayload()) .getValue(WekaEvaluationContainer.VALUE_EVALUATION); indices = (int[]) ((WekaEvaluationContainer) m_InputToken.getPayload()) .getValue(WekaEvaluationContainer.VALUE_ORIGINALINDICES); testData = (Instances) ((WekaEvaluationContainer) m_InputToken.getPayload()) .getValue(WekaEvaluationContainer.VALUE_TESTDATA); } else { eval = (Evaluation) m_InputToken.getPayload(); indices = null; testData = null; } header = eval.getHeader(); nominal = header.classAttribute().isNominal(); predictions = eval.predictions(); if (predictions != null) { data = new DefaultSpreadSheet(); data.setName("Predictions"); // create header row = data.getHeaderRow(); row.addCell("A").setContent(m_MeasuresPrefix + "Actual"); row.addCell("P").setContent(m_MeasuresPrefix + "Predicted"); indexErr = -1; if (m_ShowError) { indexErr = row.getCellCount(); row.addCell("E").setContent(m_MeasuresPrefix + "Error"); } // probability indexProb = -1; if (m_ShowProbability && nominal) { indexProb = row.getCellCount(); row.addCell("Pr").setContent(m_MeasuresPrefix + "Probability"); } // distribution indexDist = -1; if (m_ShowDistribution && nominal) { indexDist = row.getCellCount(); for (n = 0; n < header.classAttribute().numValues(); n++) row.addCell("D" + n).setContent( m_MeasuresPrefix + "Distribution (" + header.classAttribute().value(n) + ")"); } // weight indexWeight = -1; if (m_ShowWeight) { indexWeight = row.getCellCount(); row.addCell("W").setContent(m_MeasuresPrefix + "Weight"); } // add data if ((indices != null) && m_UseOriginalIndices) predictions = CrossValidationHelper.alignPredictions(predictions, indices); for (i = 0; i < predictions.size(); i++) { pred = predictions.get(i); row = data.addRow(); // actual if (Double.isNaN(pred.actual())) row.addCell(0).setMissing(); else if (nominal) row.addCell(0).setContentAsString(header.classAttribute().value((int) pred.actual())); else row.addCell(0).setContent(pred.actual()); // predicted if (Double.isNaN(pred.predicted())) row.addCell(1).setMissing(); else if (nominal) row.addCell(1).setContentAsString(header.classAttribute().value((int) pred.predicted())); else row.addCell(1).setContent(pred.predicted()); // error if (m_ShowError) { if (nominal) { row.addCell(indexErr).setContent((pred.actual() != pred.predicted() ? "true" : "false")); } else { if (m_UseAbsoluteError) row.addCell(indexErr).setContent(Math.abs(pred.actual() - pred.predicted())); else row.addCell(indexErr).setContent(pred.actual() - pred.predicted()); } } // probability if (m_ShowProbability && nominal) { row.addCell(indexProb).setContent(StatUtils.max(((NominalPrediction) pred).distribution())); } // distribution if (m_ShowDistribution && nominal) { for (n = 0; n < header.classAttribute().numValues(); n++) row.addCell(indexDist + n).setContent(((NominalPrediction) pred).distribution()[n]); } // weight if (m_ShowWeight) { row.addCell(indexWeight).setContent(pred.weight()); } } // add test data? if ((testData != null) && !m_TestAttributes.isEmpty()) { testData = filterTestData(testData); if (testData != null) { testView = new InstancesView(testData); data.mergeWith(testView); } } // generate output token m_OutputToken = new Token(data); } else { getLogger().severe("No predictions available from Evaluation object!"); } return result; }
From source file:machinelearningcw.MachineLearningCw.java
public static void compareAlgorithms(Instances data) throws Exception { System.out.println("Compare Algorithms"); EnhancedLinearPerceptron ep = new EnhancedLinearPerceptron(); ep.onlineoroffline = false;// set to choice offline ep.numberofiterations = 100;/* ww w . ja v a2 s .c om*/ ep.setCrossvalidate = false; ep.setStandardiseAttributes = false; int numFolds = 10; EvaluationUtils eval = new EvaluationUtils(); ArrayList<Prediction> preds = eval.getCVPredictions(ep, data, numFolds); int correct = 0; int total = 0; for (Prediction pred : preds) { if (pred.predicted() == pred.actual()) { correct++; } total++; } double acc = ((double) correct / total); System.out.println("Offline Accuracy: " + acc); writer.append(acc + ","); perceptronClassifier p = new perceptronClassifier(); numFolds = 10; eval = new EvaluationUtils(); ArrayList<Prediction> preds2 = eval.getCVPredictions(p, data, numFolds); correct = 0; total = 0; for (Prediction pred : preds2) { if (pred.predicted() == pred.actual()) { correct++; } total++; } acc = ((double) correct / total); System.out.println("Online Accury: " + acc); writer.append(acc + ","); }
From source file:machinelearningcw.MachineLearningCw.java
public static void standardiseData(Instances data) throws Exception { System.out.println("\n" + "Compare Algorithms with standiasation"); EnhancedLinearPerceptron ep = new EnhancedLinearPerceptron(); ep.onlineoroffline = false;// set to choice offline ep.numberofiterations = 100;// w w w . j ava2 s . c o m ep.setCrossvalidate = false; ep.setStandardiseAttributes = true;//std attributes //standardise the test instances int numFolds = 10; EvaluationUtils eval = new EvaluationUtils(); ArrayList<Prediction> preds = eval.getCVPredictions(ep, data, numFolds); int correct = 0; int total = 0; for (Prediction pred : preds) { if (pred.predicted() == pred.actual()) { correct++; } total++; } double acc = ((double) correct / total); System.out.println("Offline Accuracy: " + acc); writer.append(acc + ","); ep.onlineoroffline = true; numFolds = 10; eval = new EvaluationUtils(); ArrayList<Prediction> preds2 = eval.getCVPredictions(ep, data, numFolds); correct = 0; total = 0; for (Prediction pred : preds2) { if (pred.predicted() == pred.actual()) { correct++; } total++; } acc = ((double) correct / total); System.out.println("Online Accury: " + acc); writer.append(acc + ","); }
From source file:machinelearningcw.MachineLearningCw.java
public static void crossValidation(Instances data) throws Exception { System.out.println("\n" + "CrossValidation"); EnhancedLinearPerceptron ep = new EnhancedLinearPerceptron(); ep.numberofiterations = 100;/*from ww w. j a v a 2 s . com*/ ep.setCrossvalidate = true; ep.setStandardiseAttributes = false;//std attributes int numFolds = 10; EvaluationUtils eval = new EvaluationUtils(); ArrayList<Prediction> preds = eval.getCVPredictions(ep, data, numFolds); int correct = 0; int total = 0; for (Prediction pred : preds) { if (pred.predicted() == pred.actual()) { correct++; } total++; } double acc = ((double) correct / total); if (ep.onlineoroffline) { System.out.println("picked: online " + "Accuracy " + acc); writer.append(acc + ","); } else { System.out.println("picked: offline " + "Accuracy " + acc); writer.append(acc + ","); } }
From source file:machinelearningcw.MachineLearningCw.java
public static void ensemble(Instances data) throws Exception { System.out.println("====ensemble method====="); RandomLinearPerceptron rlp = new RandomLinearPerceptron(); int numFolds = 10; EvaluationUtils eval = new EvaluationUtils(); ArrayList<Prediction> preds = eval.getCVPredictions(rlp, data, numFolds); int correct = 0; int total = 0; for (Prediction pred : preds) { if (pred.predicted() == pred.actual()) { correct++;//from w w w . j a va2 s .com } total++; } double acc = ((double) correct / total); writer.append(acc + ","); System.out.println("Random Accuracy: " + acc); }
From source file:machinelearningcw.MachineLearningCw.java
public static void perceptron(Instances data) throws Exception { perceptronClassifier p = new perceptronClassifier(); data.setClassIndex(data.numAttributes() - 1); int numFolds = 10; EvaluationUtils eval = new EvaluationUtils(); ArrayList<Prediction> preds = eval.getCVPredictions(p, data, numFolds); int correct = 0; int total = 0; for (Prediction pred : preds) { if (pred.predicted() == pred.actual()) { correct++;//from www .ja v a2 s .c o m } total++; } double acc = ((double) correct / total); System.out.println(acc); }
From source file:machinelearningcw.MachineLearningCw.java
public static void RandomLinearPerceptron(Instances data) throws Exception { System.out.println("\n ========RandomLinearPerceptron=========="); RandomLinearPerceptron rlp = new RandomLinearPerceptron(); int numFolds = 10; EvaluationUtils eval = new EvaluationUtils(); ArrayList<Prediction> preds = eval.getCVPredictions(rlp, data, numFolds); int correct = 0; int total = 0; for (Prediction pred : preds) { if (pred.predicted() == pred.actual()) { correct++;/* w ww . j a v a 2 s . c om*/ } total++; } double acc = ((double) correct / total); System.out.println("Random Accuracy: " + acc); }