List of usage examples for org.w3c.dom Document setXmlStandalone
public void setXmlStandalone(boolean xmlStandalone) throws DOMException;
From source file:org.panlab.tgw.restclient.RepoAdapter.java
static String addSchemaDefinition(String response) { try {//from w w w .j a va 2s.c om ByteArrayInputStream bais = new ByteArrayInputStream(response.getBytes()); DocumentBuilderFactory fact = DocumentBuilderFactory.newInstance(); DocumentBuilder builder = fact.newDocumentBuilder(); Document doc = builder.parse(bais); Attr attr = doc.createAttribute("xmlns"); attr.setValue("http://xml.netbeans.org/schema/repo.xsd"); //attr.setValue("http://www.w3.org/2001/XMLSchema"); doc.getDocumentElement().setAttributeNode(attr); ByteArrayOutputStream baos = new ByteArrayOutputStream(); Result result = new StreamResult(baos); // Write the DOM document to the file doc.setXmlStandalone(false); Transformer xformer = TransformerFactory.newInstance().newTransformer(); Source source = new DOMSource(doc); xformer.transform(source, result); response = new String(baos.toByteArray()); return response; } catch (Exception error) { return null; } }
From source file:org.rdswicthboard.utils.rdf.oai.App.java
public static void main(String[] args) { // create the command line parser CommandLineParser parser = new DefaultParser(); // create the Options Options options = new Options(); options.addOption("i", PROPERTY_INPUT_FILE, true, "input RDF file"); options.addOption("o", PROPERTY_OUTPUT_FILE, true, "output OAI-PMH XML file (default is " + DEFAULT_OUTPUT_FILE + ")"); options.addOption("c", PROPERTY_CONFIG_FILE, true, "configuration file (" + PROPERTIES_FILE + ")"); options.addOption("s", PROPERTY_SET_SPEC, true, "set spec value (default is " + DEFAULT_SET_SPEC + ")"); options.addOption("I", PROPERTY_INPUT_ENCODING, true, "input file encoding (default is " + DEFAULT_ENCODING + ")"); options.addOption("O", PROPERTY_OUTPUT_ENCODING, true, "output file encoding (default is " + DEFAULT_ENCODING + ")"); options.addOption("f", PROPERTY_FORMAT_OUTPUT, false, "format output encoding"); options.addOption("h", PROPERTY_HELP, false, "print this message"); try {/*from w w w .j av a2s . co m*/ // parse the command line arguments CommandLine line = parser.parse(options, args); if (line.hasOption(PROPERTY_HELP)) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("java -jar rdf2oai-[verion].jar [PARAMETERS] [INPUT FILE] [OUTPUT FILE]", options); System.exit(0); } // variables to store program properties CompositeConfiguration config = new CompositeConfiguration(); config.setProperty(PROPERTY_OUTPUT_FILE, DEFAULT_OUTPUT_FILE); config.setProperty(PROPERTY_INPUT_ENCODING, DEFAULT_ENCODING); config.setProperty(PROPERTY_OUTPUT_ENCODING, DEFAULT_ENCODING); config.setProperty(PROPERTY_SET_SPEC, DEFAULT_SET_SPEC); config.setProperty(PROPERTY_FORMAT_OUTPUT, DEFAULT_FORMAT_OUTPUT); // check if arguments has input file properties if (line.hasOption(PROPERTY_CONFIG_FILE)) { // if it does, load the specified configuration file Path defaultConfig = Paths.get(line.getOptionValue(PROPERTY_CONFIG_FILE)); if (Files.isRegularFile(defaultConfig) && Files.isReadable(defaultConfig)) { config.addConfiguration(new PropertiesConfiguration(defaultConfig.toFile())); } else throw new Exception("Invalid configuration file: " + defaultConfig.toString()); } else { // if it not, try to load default configurationfile Path defaultConfig = Paths.get(PROPERTIES_FILE); if (Files.isRegularFile(defaultConfig) && Files.isReadable(defaultConfig)) { config.addConfiguration(new PropertiesConfiguration(defaultConfig.toFile())); } } // check if arguments has input file if (line.hasOption(PROPERTY_INPUT_FILE)) config.setProperty(PROPERTY_INPUT_FILE, line.getOptionValue(PROPERTY_INPUT_FILE)); // check if arguments has output file if (line.hasOption(PROPERTY_OUTPUT_FILE)) config.setProperty(PROPERTY_OUTPUT_FILE, line.getOptionValue(PROPERTY_OUTPUT_FILE)); // check if arguments has set spec name if (line.hasOption(PROPERTY_SET_SPEC)) config.setProperty(PROPERTY_SET_SPEC, line.getOptionValue(PROPERTY_SET_SPEC)); // check if arguments has input encoding if (line.hasOption(PROPERTY_INPUT_ENCODING)) config.setProperty(PROPERTY_INPUT_ENCODING, line.getOptionValue(PROPERTY_INPUT_ENCODING)); // check if arguments has output encoding if (line.hasOption(PROPERTY_OUTPUT_ENCODING)) config.setProperty(PROPERTY_OUTPUT_ENCODING, line.getOptionValue(PROPERTY_OUTPUT_ENCODING)); // check if arguments has output encoding if (line.hasOption(PROPERTY_FORMAT_OUTPUT)) config.setProperty(PROPERTY_FORMAT_OUTPUT, "yes"); // check if arguments has input file without a key if (line.getArgs().length > 0) { config.setProperty(PROPERTY_INPUT_FILE, line.getArgs()[0]); // check if arguments has output file without a key if (line.getArgs().length > 1) { config.setProperty(PROPERTY_OUTPUT_FILE, line.getArgs()[1]); // check if there is too many arguments if (line.getArgs().length > 2) throw new Exception("Too many arguments"); } } // The program has default output file, but input file must be presented if (!config.containsKey(PROPERTY_INPUT_FILE)) throw new Exception("Please specify input file"); // extract input file String inputFile = config.getString(PROPERTY_INPUT_FILE); // extract output file String outputFile = config.getString(PROPERTY_OUTPUT_FILE); // extract set spec String setSpecName = config.getString(PROPERTY_SET_SPEC); // extract encoding String inputEncoding = config.getString(PROPERTY_INPUT_ENCODING); String outputEncoding = config.getString(PROPERTY_OUTPUT_ENCODING); boolean formatOutput = config.getBoolean(PROPERTY_FORMAT_OUTPUT); // test if source is an regular file and it is readable Path source = Paths.get(inputFile); if (!Files.isRegularFile(source)) throw new Exception("The input file: " + source.toString() + " is not an regular file"); if (!Files.isReadable(source)) throw new Exception("The input file: " + source.toString() + " is not readable"); Path target = Paths.get(outputFile); if (Files.exists(target)) { if (!Files.isRegularFile(target)) throw new Exception("The output file: " + target.toString() + " is not an regular file"); if (!Files.isWritable(target)) throw new Exception("The output file: " + target.toString() + " is not writable"); } // create and setup document builder factory DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); // create new document builder DocumentBuilder builder = factory.newDocumentBuilder(); // create oai document Document oai = builder.newDocument(); // set document version oai.setXmlVersion("1.0"); oai.setXmlStandalone(true); // create root OAI-PMH element Element oaiPmh = oai.createElement("OAI-PMH"); // set document namespaces oaiPmh.setAttribute("xmlns", "http://www.openarchives.org/OAI/2.0/"); oaiPmh.setAttributeNS("http://www.w3.org/2000/xmlns/", "xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance"); oaiPmh.setAttribute("xsi:schemaLocation", "http://www.openarchives.org/OAI/2.0/ http://www.openarchives.org/OAI/2.0/OAI-PMH.xsd"); // append root node oai.appendChild(oaiPmh); // create responseDate element Element responseDate = oai.createElement("responseDate"); // create simple date format DateFormat dateFormat = new SimpleDateFormat(TIME_FORMAT); // generate date String date = dateFormat.format(new Date()); // set current date and time responseDate.setTextContent(date); oaiPmh.appendChild(responseDate); Element listRecords = oai.createElement("ListRecords"); oaiPmh.appendChild(listRecords); // create xpath factory XPathFactory xPathfactory = XPathFactory.newInstance(); // create namespace context NamespaceContext namespaceContext = new NamespaceContext() { public String getNamespaceURI(String prefix) { if (prefix.equals("rdf")) return RDF_NAMESPACE; else if (prefix.equals("rns")) return RNF_NAMESPACE; else return null; } @Override public Iterator<?> getPrefixes(String val) { throw new IllegalAccessError("Not implemented!"); } @Override public String getPrefix(String uri) { throw new IllegalAccessError("Not implemented!"); } }; // create xpath object XPath xpath = xPathfactory.newXPath(); // set namespace contex xpath.setNamespaceContext(namespaceContext); // create XPath expressions XPathExpression idExpr = xpath.compile("/rdf:RDF/rns:Researcher/@rdf:about"); XPathExpression emptyExpr = xpath.compile("//text()[normalize-space(.) = '']"); // create RegEx patterns Pattern pattern = Pattern.compile( "<\\?xml\\s+version=\"[\\d\\.]+\"\\s*\\?>\\s*<\\s*rdf:RDF[^>]*>[\\s\\S]*?<\\s*\\/\\s*rdf:RDF\\s*>"); // read file into a string String content = new String(Files.readAllBytes(source), inputEncoding); Matcher matcher = pattern.matcher(content); // process all records while (matcher.find()) { // convert string to input stream ByteArrayInputStream input = new ByteArrayInputStream( matcher.group().getBytes(StandardCharsets.UTF_8.toString())); // parse the xml document Document doc = builder.parse(input); // remove all spaces NodeList emptyNodes = (NodeList) emptyExpr.evaluate(doc, XPathConstants.NODESET); // Remove each empty text node from document. for (int i = 0; i < emptyNodes.getLength(); i++) { Node emptyTextNode = emptyNodes.item(i); emptyTextNode.getParentNode().removeChild(emptyTextNode); } // obtain researcher id String id = (String) idExpr.evaluate(doc, XPathConstants.STRING); if (StringUtils.isEmpty(id)) throw new Exception("The record identifier can not be empty"); // create record element Element record = oai.createElement("record"); listRecords.appendChild(record); // create header element Element header = oai.createElement("header"); record.appendChild(header); // create identifier element Element identifier = oai.createElement("identifier"); identifier.setTextContent(id); header.appendChild(identifier); // create datestamp element Element datestamp = oai.createElement("datestamp"); datestamp.setTextContent(date); header.appendChild(datestamp); // create set spec element if it exists if (!StringUtils.isEmpty(setSpecName)) { Element setSpec = oai.createElement("setSpec"); setSpec.setTextContent(setSpecName); header.appendChild(setSpec); } // create metadata element Element metadata = oai.createElement("metadata"); record.appendChild(metadata); // import the record metadata.appendChild(oai.importNode(doc.getDocumentElement(), true)); } // create transformer factory TransformerFactory transformerFactory = TransformerFactory.newInstance(); // create transformer Transformer transformer = transformerFactory.newTransformer(); transformer.setOutputProperty(OutputKeys.ENCODING, outputEncoding); if (formatOutput) { transformer.setOutputProperty(OutputKeys.INDENT, "yes"); transformer.setOutputProperty("{http://xml.apache.org/xslt}indent-amount", "2"); } else transformer.setOutputProperty(OutputKeys.INDENT, "no"); // create dom source DOMSource oaiSource = new DOMSource(oai); // create stream result StreamResult result = new StreamResult(target.toFile()); // stream xml to file transformer.transform(oaiSource, result); // optional stream xml to console for testing //StreamResult consoleResult = new StreamResult(System.out); //transformer.transform(oaiSource, consoleResult); } catch (Exception e) { System.err.println("Error: " + e.getMessage()); //e.printStackTrace(); System.exit(1); } }
From source file:org.xwoot.wikiContentManager.XWikiSwizzleClient.XwikiSwizzleClient.java
public static Document toXmlStatic(String pageId, String href, Map<String, String> pageMap) throws WikiContentManagerException { if (pageMap == null) { return null; }/*from w ww.ja v a2 s . c om*/ DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder builder; try { builder = factory.newDocumentBuilder(); } catch (ParserConfigurationException e) { throw new WikiContentManagerException(e); } Document document = builder.newDocument(); // Proprits du DOM document.setXmlVersion("1.0"); document.setXmlStandalone(true); // Cration de l'arborescence du DOM Element racine = document.createElement(XML_NODE_NAME_XWIKIPAGE); racine.setAttribute(XML_ATTRIBUTE_NAME_XWIKIPAGEID, pageId); racine.setAttribute(XML_ATTRIBUTE_NAME_HREF, href); Element entries = document.createElement(XML_NODE_NAME_ENTRIES); Iterator i = pageMap.entrySet().iterator(); Element entry = null; Element key = null; Element value = null; while (i.hasNext()) { Entry k = (Entry) i.next(); entry = document.createElement(XML_NODE_NAME_ENTRY); key = document.createElement(XML_NODE_NAME_ENTRY_KEY); key.appendChild(document.createTextNode((String) k.getKey())); entry.appendChild(key); value = document.createElement(XML_NODE_NAME_ENTRY_VALUE); value.appendChild(document.createTextNode((String) k.getValue())); entry.appendChild(value); entries.appendChild(entry); } racine.appendChild(entries); document.appendChild(racine); document.normalizeDocument(); return document; }
From source file:org.xwoot.wikiContentManager.XWikiSwizzleClient.XwikiSwizzleClient.java
public static Document PageListToXmlStatic(String pagesHRef, List<String> list) throws WikiContentManagerException { if (list != null) { DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder builder;//from www . j a v a 2 s .c om try { builder = factory.newDocumentBuilder(); } catch (ParserConfigurationException e) { throw new WikiContentManagerException(e); } Document document = builder.newDocument(); // Proprits du DOM document.setXmlVersion("1.0"); document.setXmlStandalone(true); // Cration de l'arborescence du DOM Element racine = document.createElement(WikiContentManager.XML_NODE_NAME_XWIKIPAGELIST); racine.setAttribute(WikiContentManager.XML_ATTRIBUTE_NAME_LISTSIZE, String.valueOf(list.size())); Iterator i = list.iterator(); Element page = null; while (i.hasNext()) { String k = (String) i.next(); page = document.createElement(WikiContentManager.XML_NODE_NAME_XWIKIPAGE); page.setAttribute(WikiContentManager.XML_ATTRIBUTE_NAME_XWIKIPAGEID, k); page.setAttribute(WikiContentManager.XML_ATTRIBUTE_NAME_HREF, pagesHRef + "/" + k); racine.appendChild(page); } document.appendChild(racine); document.normalizeDocument(); return document; } return null; }
From source file:org.yamj.core.tools.xml.DOMHelper.java
/** * Write the Document out to a file using nice formatting * * @param doc The document to save/* w ww . j a v a 2 s . c om*/ * @param localFile The file to write to * @return */ public static boolean writeDocumentToFile(Document doc, File localFile) { try { Transformer trans = TransformerFactory.newInstance().newTransformer(); // Define the output properties trans.setOutputProperty(OutputKeys.OMIT_XML_DECLARATION, "no"); trans.setOutputProperty(OutputKeys.ENCODING, "UTF-8"); trans.setOutputProperty(OutputKeys.INDENT, YES); trans.setOutputProperty("{http://xml.apache.org/xslt}indent-amount", "4"); doc.setXmlStandalone(true); trans.transform(new DOMSource(doc), new StreamResult(localFile)); return true; } catch (IllegalArgumentException | DOMException | TransformerException ex) { LOG.error("Error writing the document to {}", localFile); LOG.error("Error", ex); return false; } }
From source file:pl.psnc.ep.rt.web.servlets.CollXMLServlet.java
@Override protected void service(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { try {//www . j a v a2 s . co m ServletRequestWrapper reqWr = RequestWrapperFactory.getInstance(req, resp); PublicationId pubId = getRequestedId(reqWr.getPathInfo(), resp); if (pubId == null) { resp.sendError(HttpServletResponse.SC_NOT_FOUND); return; } DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); factory.setNamespaceAware(true); Document doc = factory.newDocumentBuilder().newDocument(); doc.setXmlStandalone(true); MetadataServer ms = ServicesManager.getInstance().getMetadataServer(); Publication rootPub; try { rootPub = (Publication) ms.getPublicationManager() .getObjects(new PublicationFilter(pubId), new OutputFilter(Publication.class)).getResult(); } catch (IdNotFoundException e) { resp.sendError(HttpServletResponse.SC_NOT_FOUND); return; } String repoURL = getRepositoryURL(reqWr); Element root = createCollection(doc, rootPub, repoURL); if (root == null) { if (!trySingleObjectCollection(rootPub, resp)) { resp.sendError(HttpServletResponse.SC_NOT_FOUND); } return; } doc.appendChild(root); for (Namespace ns : Namespace.values()) { root.setAttribute("xmlns:" + ns.name().toLowerCase(), ns.URI); } Transformer transformer = TransformerFactory.newInstance().newTransformer(); transformer.setOutputProperty(OutputKeys.INDENT, "yes"); DOMSource source = new DOMSource(doc); resp.setContentType("application/xml; charset=utf-8"); StreamResult result = new StreamResult(resp.getOutputStream()); transformer.transform(source, result); } catch (Exception ex) { logger.error("Unexpected error occured while accessing server", ex); resp.sendError(HttpServletResponse.SC_INTERNAL_SERVER_ERROR); } }
From source file:uk.ac.ebi.aamtool.ReactionDecoder.java
private void FormatXMLToFile(Document doc, String fileName) throws TransformerConfigurationException, TransformerException { // write xml to file TransformerFactory transformerFactory = TransformerFactory.newInstance(); Transformer transformer = transformerFactory.newTransformer(); transformer.setOutputProperty(METHOD, "xml"); transformer.setOutputProperty(ENCODING, "UTF-8"); transformer.setOutputProperty(INDENT, "yes"); transformer.setOutputProperty("{http://xml.apache.org/xslt}indent-amount", "2"); doc.setXmlStandalone(true); DOMSource source = new DOMSource(doc); /*//w w w . jav a2 s . co m Write to a File */ File file = new File(fileName + ".xml"); StreamResult result = new StreamResult(file); transformer.transform(source, result); out.println("Output is presented in xml format: " + file.getAbsolutePath()); if (DEBUG) { // Show output on console during development result = new StreamResult(out); transformer.transform(source, result); } }