Example usage for org.w3c.dom Document getDocumentElement

Introduction

In this page you can find the example usage for org.w3c.dom Document getDocumentElement.

Prototype

public Element getDocumentElement();

Source Link

Document

This is a convenience attribute that allows direct access to the child node that is the document element of the document.

Usage

From source file:Main.java

public static void main(String args[]) {
    DocumentBuilderFactory builderFactory = DocumentBuilderFactory.newInstance();
    builderFactory.setNamespaceAware(true); // Set namespace aware
    builderFactory.setValidating(true); // and validating parser feaures
    builderFactory.setIgnoringElementContentWhitespace(true);

    DocumentBuilder builder = null;
    try {//w  w  w . j ava  2 s. c  om
        builder = builderFactory.newDocumentBuilder(); // Create the parser
    } catch (ParserConfigurationException e) {
        e.printStackTrace();
    }
    Document xmlDoc = null;

    try {
        xmlDoc = builder.parse(new InputSource(new StringReader(xmlString)));

    } catch (SAXException e) {
        e.printStackTrace();

    } catch (IOException e) {
        e.printStackTrace();
    }
    DocumentType doctype = xmlDoc.getDoctype();
    if (doctype == null) {
        System.out.println("DOCTYPE is null");
    } else {
        System.out.println("DOCTYPE node:\n" + doctype.getInternalSubset());
    }

    System.out.println("\nDocument body contents are:");
    listNodes(xmlDoc.getDocumentElement(), ""); // Root element & children
}

---

From source file:edu.lternet.pasta.datapackagemanager.LevelOneEMLFactory.java

public static void main(String[] args) {
    String filePath = args[0];//from   ww w.  j  av  a2 s. c  o m
    String newFilePath = String.format("%s_new", filePath);
    File newFile = new File(newFilePath);
    LevelOneEMLFactory loef = new LevelOneEMLFactory();
    File levelZeroEMLFile = new File(filePath);
    //String levelOneEMLString = null;
    //Node documentElement = levelZeroEMLDocument.getDocumentElement();
    //String levelZeroEMLString = XMLUtilities.getDOMTreeAsString(documentElement);
    try {
        Document levelZeroEMLDocument = XmlUtility.xmlFileToDocument(levelZeroEMLFile);
        loef.checkIntellectualRights(levelZeroEMLDocument);
        Node documentElement = levelZeroEMLDocument.getDocumentElement();
        String levelOneEMLString = XMLUtilities.getDOMTreeAsString(documentElement);
        FileUtils.writeStringToFile(newFile, levelOneEMLString, "UTF-8");
    } catch (Exception e) {
        e.printStackTrace();
    }
}

---

From source file:MainClass.java

public static void main(String args[]) {
    DocumentBuilderFactory builderFactory = DocumentBuilderFactory.newInstance();
    builderFactory.setValidating(true); // and validating parser feaures
    builderFactory.setIgnoringElementContentWhitespace(true);

    DocumentBuilder builder = null;
    try {// www.  j  a  v a 2 s . com
        builder = builderFactory.newDocumentBuilder(); // Create the parser
    } catch (ParserConfigurationException e) {
        e.printStackTrace();
    }
    Document xmlDoc = null;

    try {
        xmlDoc = builder.parse(new InputSource(new StringReader(xmlString)));

    } catch (SAXException e) {
        e.printStackTrace();

    } catch (IOException e) {
        e.printStackTrace();
    }
    DocumentType doctype = xmlDoc.getDoctype();
    if (doctype == null) {
        System.out.println("DOCTYPE is null");
    } else {
        System.out.println("DOCTYPE node:\n" + doctype.getInternalSubset());
    }

    System.out.println("\nDocument body contents are:");
    listNodes(xmlDoc.getDocumentElement(), ""); // Root element & children
}

---

From source file:com.wrmsr.nativity.x86.App.java

public static void main(String[] args) throws Exception {
    logger.info("hi");

    Document doc;
    try (InputStream is = App.class.getClassLoader().getResourceAsStream("x86reference.xml")) {
        DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance();
        dbFactory.setFeature("http://apache.org/xml/features/nonvalidating/load-dtd-grammar", false);
        dbFactory.setFeature("http://apache.org/xml/features/nonvalidating/load-external-dtd", false);
        DocumentBuilder dBuilder = dbFactory.newDocumentBuilder();
        doc = dBuilder.parse(is);//from  w  w  w . jav a  2 s  .  c o  m
    }

    //optional, but recommended
    //read this - http://stackoverflow.com/questions/13786607/normalization-in-dom-parsing-with-java-how-does-it-work
    doc.getDocumentElement().normalize();

    List<Ref.Entry> entries = Lists.newArrayList();
    Ref.Parsing.parseRoot(doc, entries);
    ByteTrie<Ref.Entry> trie = DisImpl.buildTrie(entries);

    System.out.println(trie.toDetailedString());
    System.out.println();
    System.out.println();

    // Dis.run(trie);

    Ordering<Pair<Ref.Operand.Type, Ref.Operand.Address>> ord = Ordering.from((o1, o2) -> {
        int c = ObjectUtils.compare(o1.getLeft(), o2.getLeft());
        if (c == 0) {
            c = ObjectUtils.compare(o1.getRight(), o2.getRight());
        }
        return c;
    });

    Set<Pair<Ref.Operand.Type, Ref.Operand.Address>> set = Sets.newHashSet();
    for (Ref.Entry entry : entries) {
        for (Ref.Syntax syntax : entry.getSyntaxes()) {
            for (Ref.Operand operand : syntax.getOperands()) {
                set.add(new ImmutablePair<>(operand.type, operand.address));
            }
        }
    }
    for (Pair<Ref.Operand.Type, Ref.Operand.Address> pair : ord.sortedCopy(set)) {
        System.out.println(pair);
    }
    System.out.println("\n");

    DisImpl.run(trie);
}

---

From source file:com.occamlab.te.parsers.ImageParser.java

public static void main(String[] args) throws Exception {
    if (args.length < 2) {
        System.err.println("Parameters: xml_url image_url");
        return;//  w  w  w.  j  a v  a2s  . c o m
    }

    java.net.URL xml_url;
    try {
        xml_url = new java.net.URL(args[0]);
    } catch (Exception e) {
        jlogger.log(Level.INFO, "Error building xmlurl, will prefix file://", e);

        xml_url = new java.net.URL("file://" + args[0]);
    }

    java.net.URL image_url;
    try {
        image_url = new java.net.URL(args[1]);
    } catch (Exception e) {
        jlogger.log(Level.INFO, "Error building xmlurl, will prefix file://", e);

        image_url = new java.net.URL("file://" + args[1]);
    }

    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    DocumentBuilder db = dbf.newDocumentBuilder();
    Document doc = db.parse(xml_url.openStream());
    // Element instruction = (Element)
    // doc.getElementsByTagNameNS("http://www.occamlab.com/te/parsers",
    // "ImageParser").item(0);
    Element instruction = (Element) doc.getDocumentElement();

    PrintWriter logger = new PrintWriter(System.out);
    InputStream image_is = image_url.openConnection().getInputStream();

    Document result = parse(image_is, instruction, logger);
    logger.flush();

    if (result != null) {
        TransformerFactory tf = TransformerFactory.newInstance();
        try {
            tf.setAttribute("http://saxon.sf.net/feature/strip-whitespace", "all");
        } catch (IllegalArgumentException e) {
            jlogger.log(Level.INFO, "setAttribute(\"http://saxon.sf.net/feature/strip-whitespace\", \"all\");",
                    e);

        }
        Transformer t = tf.newTransformer();
        t.setOutputProperty(OutputKeys.INDENT, "yes");
        t.transform(new DOMSource(result), new StreamResult(System.out));
    }

    System.exit(0);
}

---

From source file:cz.muni.fi.mir.mathmlunificator.MathMLUnificatorCommandLineTool.java

/**
 * Main (starting) method of the command line application.
 *
 * @param argv Array of command line arguments that are expected to be
 * filesystem paths to input XML documents with MathML to be unified.
 * @throws ParserConfigurationException If a XML DOM builder cannot be
 * created with the configuration requested.
 *//*w w w.  ja  v  a 2 s.c  om*/
public static void main(String argv[]) throws ParserConfigurationException {

    final Options options = new Options();
    options.addOption("p", "operator-unification", false, "unify operator in addition to other types of nodes");
    options.addOption("h", "help", false, "print help");

    final CommandLineParser parser = new DefaultParser();
    CommandLine line = null;
    try {
        line = parser.parse(options, argv);
    } catch (ParseException ex) {
        printHelp(options);
        System.exit(1);
    }

    if (line != null) {
        if (line.hasOption('h')) {
            printHelp(options);
            System.exit(0);
        }
        operatorUnification = line.hasOption('p');

        final List<String> arguments = Arrays.asList(line.getArgs());
        if (arguments.size() > 0) {

            Document outerDocument = DOMBuilder.getDocumentBuilder().newDocument();
            Node rootNode = outerDocument.createElementNS(UNIFIED_MATHML_NS,
                    UNIFIED_MATHML_NS_PREFIX + ":" + UNIFIED_MATHML_BATCH_OUTPUT_ROOT_ELEM);
            outerDocument.appendChild(rootNode);

            for (String filepath : arguments) {
                try {

                    Document doc = DOMBuilder.buildDocFromFilepath(filepath);
                    MathMLUnificator.unifyMathML(doc, operatorUnification);
                    if (arguments.size() == 1) {
                        xmlStdoutSerializer(doc);
                    } else {
                        Node itemNode = rootNode.getOwnerDocument().createElementNS(UNIFIED_MATHML_NS,
                                UNIFIED_MATHML_NS_PREFIX + ":" + UNIFIED_MATHML_BATCH_OUTPUT_ITEM_ELEM);
                        Attr filenameAttr = itemNode.getOwnerDocument().createAttributeNS(UNIFIED_MATHML_NS,
                                UNIFIED_MATHML_NS_PREFIX + ":"
                                        + UNIFIED_MATHML_BATCH_OUTPUT_ITEM_FILEPATH_ATTR);
                        filenameAttr.setTextContent(String.valueOf(filepath));
                        ((Element) itemNode).setAttributeNodeNS(filenameAttr);
                        itemNode.appendChild(
                                rootNode.getOwnerDocument().importNode(doc.getDocumentElement(), true));
                        rootNode.appendChild(itemNode);

                    }

                } catch (SAXException | IOException ex) {
                    Logger.getLogger(MathMLUnificatorCommandLineTool.class.getName()).log(Level.SEVERE,
                            "Failed processing of file: " + filepath, ex);
                }
            }

            if (rootNode.getChildNodes().getLength() > 0) {
                xmlStdoutSerializer(rootNode.getOwnerDocument());
            }

        } else {
            printHelp(options);
            System.exit(0);
        }
    }

}

---

From source file:Gen.java

public static void main(String[] args) throws Exception {

    try {/*from  www. j  a  v a  2 s  . c  o m*/

        File[] files = null;
        if (System.getProperty("dir") != null && !System.getProperty("dir").equals("")) {
            files = new File(System.getProperty("dir")).listFiles(new FilenameFilter() {
                public boolean accept(File dir, String name) {
                    return name.toUpperCase().endsWith(".XML");
                };
            });
        } else {
            String fileName = System.getProperty("file") != null && !System.getProperty("file").equals("")
                    ? System.getProperty("file")
                    : "rjmap.xml";
            files = new File[] { new File(fileName) };
        }

        log.info("files : " + Arrays.toString(files));

        if (files == null || files.length == 0) {
            log.info("no files to parse");
            System.exit(0);
        }

        boolean formatsource = true;
        if (System.getProperty("formatsource") != null && !System.getProperty("formatsource").equals("")
                && System.getProperty("formatsource").equalsIgnoreCase("false")) {
            formatsource = false;
        }

        GEN_ROOT = System.getProperty("outputdir");

        if (GEN_ROOT == null || GEN_ROOT.equals("")) {
            GEN_ROOT = new File(files[0].getAbsolutePath()).getParent() + FILE_SEPARATOR + "distrib";
        }

        GEN_ROOT = new File(GEN_ROOT).getAbsolutePath().replace('\\', '/');
        if (GEN_ROOT.endsWith("/"))
            GEN_ROOT = GEN_ROOT.substring(0, GEN_ROOT.length() - 1);

        System.out.println("GEN ROOT:" + GEN_ROOT);

        MAPPING_JAR_NAME = System.getProperty("mappingjar") != null
                && !System.getProperty("mappingjar").equals("") ? System.getProperty("mappingjar")
                        : "mapping.jar";
        if (!MAPPING_JAR_NAME.endsWith(".jar"))
            MAPPING_JAR_NAME += ".jar";

        GEN_ROOT_SRC = GEN_ROOT + FILE_SEPARATOR + "src";
        GEN_ROOT_LIB = GEN_ROOT + FILE_SEPARATOR + "";

        DocumentBuilderFactory domFactory = DocumentBuilderFactory.newInstance();
        domFactory.setNamespaceAware(true);
        domFactory.setValidating(false);
        DocumentBuilder documentBuilder = domFactory.newDocumentBuilder();

        for (int f = 0; f < files.length; ++f) {
            log.info("parsing file : " + files[f]);
            Document document = documentBuilder.parse(files[f]);

            Vector<Node> initNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "scripts"), "initScript",
                    initNodes);
            for (int i = 0; i < initNodes.size(); ++i) {
                NamedNodeMap attrs = initNodes.elementAt(i).getAttributes();
                boolean embed = attrs.getNamedItem("embed") != null
                        && attrs.getNamedItem("embed").getNodeValue().equalsIgnoreCase("true");
                StringBuffer vbuffer = new StringBuffer();
                if (attrs.getNamedItem("inline") != null) {
                    vbuffer.append(attrs.getNamedItem("inline").getNodeValue());
                    vbuffer.append('\n');
                } else {
                    String fname = attrs.getNamedItem("name").getNodeValue();
                    if (!fname.startsWith("\\") && !fname.startsWith("/") && fname.toCharArray()[1] != ':') {
                        String path = files[f].getAbsolutePath();
                        path = path.substring(0, path.lastIndexOf(FILE_SEPARATOR));
                        fname = new File(path + FILE_SEPARATOR + fname).getCanonicalPath();
                    }
                    vbuffer.append(Utils.getFileAsStringBuffer(fname));
                }
                initScriptBuffer.append(vbuffer);
                if (embed)
                    embedScriptBuffer.append(vbuffer);
            }

            Vector<Node> packageInitNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "scripts"), "packageScript",
                    packageInitNodes);
            for (int i = 0; i < packageInitNodes.size(); ++i) {
                NamedNodeMap attrs = packageInitNodes.elementAt(i).getAttributes();
                String packageName = attrs.getNamedItem("package").getNodeValue();

                if (packageName.equals(""))
                    packageName = "rGlobalEnv";

                if (!packageName.endsWith("Function"))
                    packageName += "Function";
                if (packageEmbedScriptHashMap.get(packageName) == null) {
                    packageEmbedScriptHashMap.put(packageName, new StringBuffer());
                }
                StringBuffer vbuffer = packageEmbedScriptHashMap.get(packageName);

                // if (!packageName.equals("rGlobalEnvFunction")) {
                // vbuffer.append("library("+packageName.substring(0,packageName.lastIndexOf("Function"))+")\n");
                // }

                if (attrs.getNamedItem("inline") != null) {
                    vbuffer.append(attrs.getNamedItem("inline").getNodeValue() + "\n");
                    initScriptBuffer.append(attrs.getNamedItem("inline").getNodeValue() + "\n");
                } else {
                    String fname = attrs.getNamedItem("name").getNodeValue();
                    if (!fname.startsWith("\\") && !fname.startsWith("/") && fname.toCharArray()[1] != ':') {
                        String path = files[f].getAbsolutePath();
                        path = path.substring(0, path.lastIndexOf(FILE_SEPARATOR));
                        fname = new File(path + FILE_SEPARATOR + fname).getCanonicalPath();
                    }
                    StringBuffer fileBuffer = Utils.getFileAsStringBuffer(fname);
                    vbuffer.append(fileBuffer);
                    initScriptBuffer.append(fileBuffer);
                }
            }

            Vector<Node> functionsNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "functions"), "function",
                    functionsNodes);
            for (int i = 0; i < functionsNodes.size(); ++i) {
                NamedNodeMap attrs = functionsNodes.elementAt(i).getAttributes();
                String functionName = attrs.getNamedItem("name").getNodeValue();

                boolean forWeb = attrs.getNamedItem("forWeb") != null
                        && attrs.getNamedItem("forWeb").getNodeValue().equalsIgnoreCase("true");

                String signature = (attrs.getNamedItem("signature") == null ? ""
                        : attrs.getNamedItem("signature").getNodeValue() + ",");
                String renameTo = (attrs.getNamedItem("renameTo") == null ? null
                        : attrs.getNamedItem("renameTo").getNodeValue());

                HashMap<String, FAttributes> sigMap = Globals._functionsToPublish.get(functionName);

                if (sigMap == null) {
                    sigMap = new HashMap<String, FAttributes>();
                    Globals._functionsToPublish.put(functionName, sigMap);

                    if (attrs.getNamedItem("returnType") == null) {
                        _functionsVector.add(new String[] { functionName });
                    } else {
                        _functionsVector.add(
                                new String[] { functionName, attrs.getNamedItem("returnType").getNodeValue() });
                    }

                }

                sigMap.put(signature, new FAttributes(renameTo, forWeb));

                if (forWeb)
                    _webPublishingEnabled = true;

            }

            if (System.getProperty("targetjdk") != null && !System.getProperty("targetjdk").equals("")
                    && System.getProperty("targetjdk").compareTo("1.5") < 0) {
                if (_webPublishingEnabled || (System.getProperty("ws.r.api") != null
                        && System.getProperty("ws.r.api").equalsIgnoreCase("true"))) {
                    log.info("be careful, web publishing disabled beacuse target JDK<1.5");
                }
                _webPublishingEnabled = false;
            } else {

                if (System.getProperty("ws.r.api") == null || System.getProperty("ws.r.api").equals("")
                        || !System.getProperty("ws.r.api").equalsIgnoreCase("false")) {
                    _webPublishingEnabled = true;
                }

                if (_webPublishingEnabled && System.getProperty("java.version").compareTo("1.5") < 0) {
                    log.info("be careful, web publishing disabled beacuse a JDK<1.5 is in use");
                    _webPublishingEnabled = false;
                }
            }

            Vector<Node> s4Nodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "s4classes"), "class", s4Nodes);

            if (s4Nodes.size() > 0) {
                String formalArgs = "";
                String signature = "";
                for (int i = 0; i < s4Nodes.size(); ++i) {
                    NamedNodeMap attrs = s4Nodes.elementAt(i).getAttributes();
                    String s4Name = attrs.getNamedItem("name").getNodeValue();
                    formalArgs += "p" + i + (i == s4Nodes.size() - 1 ? "" : ",");
                    signature += "'" + s4Name + "'" + (i == s4Nodes.size() - 1 ? "" : ",");
                }
                String genBeansScriptlet = "setGeneric('" + PUBLISH_S4_HEADER + "', function(" + formalArgs
                        + ") standardGeneric('" + PUBLISH_S4_HEADER + "'));" + "setMethod('" + PUBLISH_S4_HEADER
                        + "', signature(" + signature + ") , function(" + formalArgs + ") {   })";
                initScriptBuffer.append(genBeansScriptlet);
                _functionsVector.add(new String[] { PUBLISH_S4_HEADER, "numeric" });
            }

        }

        if (!new File(GEN_ROOT_LIB).exists())
            regenerateDir(GEN_ROOT_LIB);
        else {
            clean(GEN_ROOT_LIB, true);
        }

        for (int i = 0; i < rwebservicesScripts.length; ++i)
            DirectJNI.getInstance().getRServices().sourceFromResource(rwebservicesScripts[i]);

        String lastStatus = DirectJNI.getInstance().runR(new ExecutionUnit() {
            public void run(Rengine e) {
                DirectJNI.getInstance().toggleMarker();
                DirectJNI.getInstance().sourceFromBuffer(initScriptBuffer.toString());
                log.info(" init  script status : " + DirectJNI.getInstance().cutStatusSinceMarker());

                for (int i = 0; i < _functionsVector.size(); ++i) {

                    String[] functionPair = _functionsVector.elementAt(i);
                    log.info("dealing with : " + functionPair[0]);

                    regenerateDir(GEN_ROOT_SRC);

                    String createMapStr = "createMap(";
                    boolean isGeneric = e.rniGetBoolArrayI(
                            e.rniEval(e.rniParse("isGeneric(\"" + functionPair[0] + "\")", 1), 0))[0] == 1;

                    log.info("is Generic : " + isGeneric);
                    if (isGeneric) {
                        createMapStr += functionPair[0];
                    } else {
                        createMapStr += "\"" + functionPair[0] + "\"";
                    }
                    createMapStr += ", outputDirectory=\"" + GEN_ROOT_SRC
                            .substring(0, GEN_ROOT_SRC.length() - "/src".length()).replace('\\', '/') + "\"";
                    createMapStr += ", typeMode=\"robject\"";
                    createMapStr += (functionPair.length == 1 || functionPair[1] == null
                            || functionPair[1].trim().equals("") ? ""
                                    : ", S4DefaultTypedSig=TypedSignature(returnType=\"" + functionPair[1]
                                            + "\")");
                    createMapStr += ")";

                    log.info("------------------------------------------");
                    log.info("-- createMapStr=" + createMapStr);
                    DirectJNI.getInstance().toggleMarker();
                    e.rniEval(e.rniParse(createMapStr, 1), 0);
                    String createMapStatus = DirectJNI.getInstance().cutStatusSinceMarker();
                    log.info(" createMap status : " + createMapStatus);
                    log.info("------------------------------------------");

                    deleteDir(GEN_ROOT_SRC + "/org/kchine/r/rserviceJms");
                    compile(GEN_ROOT_SRC);
                    jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar", null);

                    URL url = null;
                    try {
                        url = new URL(
                                "jar:file:" + (GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar")
                                        .replace('\\', '/') + "!/");
                    } catch (Exception ex) {
                        ex.printStackTrace();
                    }
                    DirectJNI.generateMaps(url, true);
                }

            }
        });

        log.info(lastStatus);

        log.info(DirectJNI._rPackageInterfacesHash);
        regenerateDir(GEN_ROOT_SRC);
        for (int i = 0; i < _functionsVector.size(); ++i) {
            unjar(GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar", GEN_ROOT_SRC);
        }

        regenerateRPackageClass(true);

        generateS4BeanRef();

        if (formatsource)
            applyJalopy(GEN_ROOT_SRC);

        compile(GEN_ROOT_SRC);

        for (String k : DirectJNI._rPackageInterfacesHash.keySet()) {
            Rmic rmicTask = new Rmic();
            rmicTask.setProject(_project);
            rmicTask.setTaskName("rmic_packages");
            rmicTask.setClasspath(new Path(_project, GEN_ROOT_SRC));
            rmicTask.setBase(new File(GEN_ROOT_SRC));
            rmicTask.setClassname(k + "ImplRemote");
            rmicTask.init();
            rmicTask.execute();
        }

        // DirectJNI._rPackageInterfacesHash=new HashMap<String,
        // Vector<Class<?>>>();
        // DirectJNI._rPackageInterfacesHash.put("org.bioconductor.packages.rGlobalEnv.rGlobalEnvFunction",new
        // Vector<Class<?>>());

        if (_webPublishingEnabled) {

            jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar", null);
            URL url = new URL(
                    "jar:file:" + (GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar").replace('\\', '/') + "!/");
            ClassLoader cl = new URLClassLoader(new URL[] { url }, Globals.class.getClassLoader());

            for (String className : DirectJNI._rPackageInterfacesHash.keySet()) {
                if (cl.loadClass(className + "Web").getDeclaredMethods().length == 0)
                    continue;
                log.info("######## " + className);

                WsGen wsgenTask = new WsGen();
                wsgenTask.setProject(_project);
                wsgenTask.setTaskName("wsgen");

                FileSet rjb_fileSet = new FileSet();
                rjb_fileSet.setProject(_project);
                rjb_fileSet.setDir(new File("."));
                rjb_fileSet.setIncludes("RJB.jar");

                DirSet src_dirSet = new DirSet();
                src_dirSet.setDir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                Path classPath = new Path(_project);
                classPath.addFileset(rjb_fileSet);
                classPath.addDirset(src_dirSet);
                wsgenTask.setClasspath(classPath);
                wsgenTask.setKeep(true);
                wsgenTask.setDestdir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                wsgenTask.setResourcedestdir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                wsgenTask.setSei(className + "Web");

                wsgenTask.init();
                wsgenTask.execute();
            }

            new File(GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar").delete();

        }

        embedRScripts();

        HashMap<String, String> marker = new HashMap<String, String>();
        marker.put("RJBMAPPINGJAR", "TRUE");

        Properties props = new Properties();
        props.put("PACKAGE_NAMES", PoolUtils.objectToHex(DirectJNI._packageNames));
        props.put("S4BEANS_MAP", PoolUtils.objectToHex(DirectJNI._s4BeansMapping));
        props.put("S4BEANS_REVERT_MAP", PoolUtils.objectToHex(DirectJNI._s4BeansMappingRevert));
        props.put("FACTORIES_MAPPING", PoolUtils.objectToHex(DirectJNI._factoriesMapping));
        props.put("S4BEANS_HASH", PoolUtils.objectToHex(DirectJNI._s4BeansHash));
        props.put("R_PACKAGE_INTERFACES_HASH", PoolUtils.objectToHex(DirectJNI._rPackageInterfacesHash));
        props.put("ABSTRACT_FACTORIES", PoolUtils.objectToHex(DirectJNI._abstractFactories));
        new File(GEN_ROOT_SRC + "/" + "maps").mkdirs();
        FileOutputStream fos = new FileOutputStream(GEN_ROOT_SRC + "/" + "maps/rjbmaps.xml");
        props.storeToXML(fos, null);
        fos.close();

        jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + MAPPING_JAR_NAME, marker);

        if (_webPublishingEnabled)
            genWeb();

        DirectJNI._mappingClassLoader = null;

    } finally {

        System.exit(0);

    }
}

---

From source file:ch.kostceco.tools.kostsimy.KOSTSimy.java

/** Die Eingabe besteht aus 2 Parameter: [0] Original-Ordner [1] Replica-Ordner
 * // ww w  .j  a  v  a 2  s. c  om
 * @param args
 * @throws IOException */

public static void main(String[] args) throws IOException {
    ApplicationContext context = new ClassPathXmlApplicationContext("classpath:config/applicationContext.xml");

    // Zeitstempel Start
    java.util.Date nowStart = new java.util.Date();
    java.text.SimpleDateFormat sdfStart = new java.text.SimpleDateFormat("dd.MM.yyyy HH:mm:ss");
    String ausgabeStart = sdfStart.format(nowStart);

    KOSTSimy kostsimy = (KOSTSimy) context.getBean("kostsimy");
    File configFile = new File("configuration" + File.separator + "kostsimy.conf.xml");

    // Ueberprfung des Parameters (Log-Verzeichnis)
    String pathToLogfile = kostsimy.getConfigurationService().getPathToLogfile();

    File directoryOfLogfile = new File(pathToLogfile);

    if (!directoryOfLogfile.exists()) {
        directoryOfLogfile.mkdir();
    }

    // Im Logverzeichnis besteht kein Schreibrecht
    if (!directoryOfLogfile.canWrite()) {
        System.out.println(
                kostsimy.getTextResourceService().getText(ERROR_LOGDIRECTORY_NOTWRITABLE, directoryOfLogfile));
        System.exit(1);
    }

    if (!directoryOfLogfile.isDirectory()) {
        System.out.println(kostsimy.getTextResourceService().getText(ERROR_LOGDIRECTORY_NODIRECTORY));
        System.exit(1);
    }

    // Ist die Anzahl Parameter (2) korrekt?
    if (args.length > 3) {
        System.out.println(kostsimy.getTextResourceService().getText(ERROR_PARAMETER_USAGE));
        System.exit(1);
    }

    File origDir = new File(args[0]);
    File repDir = new File(args[1]);
    File logDatei = null;
    logDatei = origDir;

    // Informationen zum Arbeitsverzeichnis holen
    String pathToWorkDir = kostsimy.getConfigurationService().getPathToWorkDir();
    /* Nicht vergessen in "src/main/resources/config/applicationContext-services.xml" beim
     * entsprechenden Modul die property anzugeben: <property name="configurationService"
     * ref="configurationService" /> */

    // Konfiguration des Loggings, ein File Logger wird zustzlich erstellt
    LogConfigurator logConfigurator = (LogConfigurator) context.getBean("logconfigurator");
    String logFileName = logConfigurator.configure(directoryOfLogfile.getAbsolutePath(), logDatei.getName());
    File logFile = new File(logFileName);
    // Ab hier kann ins log geschrieben werden...

    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_HEADER));
    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_START, ausgabeStart));
    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_END));
    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_INFO));
    System.out.println("KOST-Simy");
    System.out.println("");

    if (!origDir.exists()) {
        // Das Original-Verzeichnis existiert nicht
        LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                kostsimy.getTextResourceService().getText(ERROR_NOORIGDIR, origDir.getAbsolutePath())));
        System.out
                .println(kostsimy.getTextResourceService().getText(ERROR_NOORIGDIR, origDir.getAbsolutePath()));
        System.exit(1);
    }

    if (!repDir.exists()) {
        // Das Replica-Verzeichnis existiert nicht
        LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                kostsimy.getTextResourceService().getText(ERROR_NOREPDIR1, repDir.getAbsolutePath())));
        System.out
                .println(kostsimy.getTextResourceService().getText(ERROR_NOREPDIR1, repDir.getAbsolutePath()));
        System.exit(1);
    }

    File xslOrig = new File("resources" + File.separator + "kost-simy.xsl");
    File xslCopy = new File(directoryOfLogfile.getAbsolutePath() + File.separator + "kost-simy.xsl");
    if (!xslCopy.exists()) {
        Util.copyFile(xslOrig, xslCopy);
    }

    // Informationen zur prozentualen Stichprobe holen
    String randomTest = kostsimy.getConfigurationService().getRandomTest();
    /* Nicht vergessen in "src/main/resources/config/applicationContext-services.xml" beim
     * entsprechenden Modul die property anzugeben: <property name="configurationService"
     * ref="configurationService" /> */
    int iRandomTest = 100;
    try {
        iRandomTest = Integer.parseInt(randomTest);
    } catch (Exception ex) {
        // unzulaessige Eingabe --> 50 wird gesetzt
        iRandomTest = 50;
    }
    if (iRandomTest > 100 || iRandomTest < 1) {
        // unzulaessige Eingabe --> 50 wird gesetzt
        iRandomTest = 50;
    }

    File tmpDir = new File(pathToWorkDir);

    /* bestehendes Workverzeichnis Abbruch wenn nicht leer, da am Schluss das Workverzeichnis
     * gelscht wird und entsprechend bestehende Dateien gelscht werden knnen */
    if (tmpDir.exists()) {
        if (tmpDir.isDirectory()) {
            // Get list of file in the directory. When its length is not zero the folder is not empty.
            String[] files = tmpDir.list();
            if (files.length > 0) {
                LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                        kostsimy.getTextResourceService().getText(ERROR_WORKDIRECTORY_EXISTS, pathToWorkDir)));
                System.out.println(
                        kostsimy.getTextResourceService().getText(ERROR_WORKDIRECTORY_EXISTS, pathToWorkDir));
                System.exit(1);
            }
        }
    }

    // Im Pfad keine Sonderzeichen Programme knnen evtl abstrzen

    String patternStr = "[^!#\\$%\\(\\)\\+,\\-_\\.=@\\[\\]\\{\\}\\~:\\\\a-zA-Z0-9 ]";
    Pattern pattern = Pattern.compile(patternStr);

    String name = tmpDir.getAbsolutePath();

    String[] pathElements = name.split("/");
    for (int i = 0; i < pathElements.length; i++) {
        String element = pathElements[i];

        Matcher matcher = pattern.matcher(element);

        boolean matchFound = matcher.find();
        if (matchFound) {
            LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                    kostsimy.getTextResourceService().getText(ERROR_SPECIAL_CHARACTER, name)));
            System.out.println(kostsimy.getTextResourceService().getText(ERROR_SPECIAL_CHARACTER, name));
            System.exit(1);
        }
    }

    // die Anwendung muss mindestens unter Java 6 laufen
    String javaRuntimeVersion = System.getProperty("java.vm.version");
    if (javaRuntimeVersion.compareTo("1.6.0") < 0) {
        LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                kostsimy.getTextResourceService().getText(ERROR_WRONG_JRE)));
        System.out.println(kostsimy.getTextResourceService().getText(ERROR_WRONG_JRE));
        System.exit(1);
    }

    // bestehendes Workverzeichnis wieder anlegen
    if (!tmpDir.exists()) {
        tmpDir.mkdir();
        File origDirTmp = new File(tmpDir.getAbsolutePath() + File.separator + "orig");
        File repDirTmp = new File(tmpDir.getAbsolutePath() + File.separator + "rep");
        origDirTmp.mkdir();
        repDirTmp.mkdir();
    }

    // Im workverzeichnis besteht kein Schreibrecht
    if (!tmpDir.canWrite()) {
        LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                kostsimy.getTextResourceService().getText(ERROR_WORKDIRECTORY_NOTWRITABLE, tmpDir)));
        System.out.println(kostsimy.getTextResourceService().getText(ERROR_WORKDIRECTORY_NOTWRITABLE, tmpDir));
        System.exit(1);
    }

    // Im Pfad keine Sonderzeichen --> Absturzgefahr
    name = origDir.getAbsolutePath();
    pathElements = name.split("/");
    for (int i = 0; i < pathElements.length; i++) {
        String element = pathElements[i];
        Matcher matcher = pattern.matcher(element);
        boolean matchFound = matcher.find();
        if (matchFound) {
            LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                    kostsimy.getTextResourceService().getText(ERROR_SPECIAL_CHARACTER, name)));
            System.out.println(kostsimy.getTextResourceService().getText(ERROR_SPECIAL_CHARACTER, name));
            System.exit(1);
        }
    }
    name = repDir.getAbsolutePath();
    pathElements = name.split("/");
    for (int i = 0; i < pathElements.length; i++) {
        String element = pathElements[i];
        Matcher matcher = pattern.matcher(element);
        boolean matchFound = matcher.find();
        if (matchFound) {
            LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                    kostsimy.getTextResourceService().getText(ERROR_SPECIAL_CHARACTER, name)));
            System.out.println(kostsimy.getTextResourceService().getText(ERROR_SPECIAL_CHARACTER, name));
            System.exit(1);
        }
    }

    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_IMAGE1));
    float count = 0;
    int countNio = 0;
    int countIo = 0;
    float countVal = 0;
    int countNotVal = 0;
    float percentage = (float) 0.0;

    if (!origDir.isDirectory()) {
        // TODO: Bildervergleich zweier Dateien --> erledigt --> nur Marker

        if (repDir.isDirectory()) {
            // Das Replica-ist ein Verzeichnis, aber Original eine Datei
            LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                    kostsimy.getTextResourceService().getText(ERROR_NOREPDIR2, repDir.getAbsolutePath())));
            System.out.println(
                    kostsimy.getTextResourceService().getText(ERROR_NOREPDIR2, repDir.getAbsolutePath()));
            System.exit(1);
        }
        boolean compFile = compFile(origDir, logFileName, directoryOfLogfile, repDir, tmpDir);

        float statIo = 0;
        int statNio = 0;
        float statUn = 0;
        if (compFile) {
            statIo = 100;
        } else {
            statNio = 100;
        }

        LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_IMAGE2));
        LOGGER.logError(
                kostsimy.getTextResourceService().getText(MESSAGE_XML_STATISTICS, statIo, statNio, statUn));

        LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_LOGEND));
        // Zeitstempel End
        java.util.Date nowEnd = new java.util.Date();
        java.text.SimpleDateFormat sdfEnd = new java.text.SimpleDateFormat("dd.MM.yyyy HH:mm:ss");
        String ausgabeEnd = sdfEnd.format(nowEnd);
        ausgabeEnd = "<End>" + ausgabeEnd + "</End>";
        Util.valEnd(ausgabeEnd, logFile);
        Util.amp(logFile);

        // Die Konfiguration hereinkopieren
        try {
            DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
            factory.setValidating(false);

            factory.setExpandEntityReferences(false);

            Document docConfig = factory.newDocumentBuilder().parse(configFile);
            NodeList list = docConfig.getElementsByTagName("configuration");
            Element element = (Element) list.item(0);

            Document docLog = factory.newDocumentBuilder().parse(logFile);

            Node dup = docLog.importNode(element, true);

            docLog.getDocumentElement().appendChild(dup);
            FileWriter writer = new FileWriter(logFile);

            ByteArrayOutputStream baos = new ByteArrayOutputStream();
            ElementToStream(docLog.getDocumentElement(), baos);
            String stringDoc2 = new String(baos.toByteArray());
            writer.write(stringDoc2);
            writer.close();

            // Der Header wird dabei leider verschossen, wieder zurck ndern
            String newstring = kostsimy.getTextResourceService().getText(MESSAGE_XML_HEADER);
            String oldstring = "<?xml version=\"1.0\" encoding=\"UTF-8\"?><KOSTSimyLog>";
            Util.oldnewstring(oldstring, newstring, logFile);

        } catch (Exception e) {
            LOGGER.logError(
                    "<Error>" + kostsimy.getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
            System.out.println("Exception: " + e.getMessage());
        }

        if (compFile) {
            // Lschen des Arbeitsverzeichnisses, falls eines angelegt wurde
            if (tmpDir.exists()) {
                Util.deleteDir(tmpDir);
            }
            // Validierte Datei valide
            System.exit(0);
        } else {
            // Lschen des Arbeitsverzeichnisses, falls eines angelegt wurde
            if (tmpDir.exists()) {
                Util.deleteDir(tmpDir);
            }
            // Fehler in Validierte Datei --> invalide
            System.exit(2);

        }
    } else {
        // TODO: Bildervergleich zweier Verzeichnisse --> in Arbeit --> nur Marker
        if (!repDir.isDirectory()) {
            // Das Replica-ist eine Datei, aber Original ein Ordner
            LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_IOE,
                    kostsimy.getTextResourceService().getText(ERROR_NOREPDIR3, repDir.getAbsolutePath())));
            System.out.println(
                    kostsimy.getTextResourceService().getText(ERROR_NOREPDIR3, repDir.getAbsolutePath()));
            System.exit(1);
        }

        Map<String, File> fileMap = Util.getFileMap(origDir, false);
        Set<String> fileMapKeys = fileMap.keySet();
        boolean other = false;

        for (Iterator<String> iterator = fileMapKeys.iterator(); iterator.hasNext();) {
            String entryName = iterator.next();
            File newFile = fileMap.get(entryName);
            if (!newFile.isDirectory()) {
                origDir = newFile;
                count = count + 1;
                if ((origDir.getAbsolutePath().toLowerCase().endsWith(".pdf")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".pdfa")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".tif")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".tiff")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".jpeg")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".jpg")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".jpe")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".jp2")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".gif")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".png")
                        || origDir.getAbsolutePath().toLowerCase().endsWith(".bmp"))) {
                    percentage = 100 / count * countVal;
                    if (percentage < iRandomTest) {
                        // if ( 100 / count * (countVal + 1) <= iRandomTest ) {

                        countVal = countVal + 1;

                        String origWithOutExt = FilenameUtils.removeExtension(origDir.getName());

                        File repFile = new File(
                                repDir.getAbsolutePath() + File.separator + origWithOutExt + ".pdf");
                        if (!repFile.exists()) {
                            repFile = new File(
                                    repDir.getAbsolutePath() + File.separator + origWithOutExt + ".pdfa");
                            if (!repFile.exists()) {
                                repFile = new File(
                                        repDir.getAbsolutePath() + File.separator + origWithOutExt + ".tif");
                                if (!repFile.exists()) {
                                    repFile = new File(repDir.getAbsolutePath() + File.separator
                                            + origWithOutExt + ".tiff");
                                    if (!repFile.exists()) {
                                        repFile = new File(repDir.getAbsolutePath() + File.separator
                                                + origWithOutExt + ".jpeg");
                                        if (!repFile.exists()) {
                                            repFile = new File(repDir.getAbsolutePath() + File.separator
                                                    + origWithOutExt + ".jpg");
                                            if (!repFile.exists()) {
                                                repFile = new File(repDir.getAbsolutePath() + File.separator
                                                        + origWithOutExt + ".jpe");
                                                if (!repFile.exists()) {
                                                    repFile = new File(repDir.getAbsolutePath() + File.separator
                                                            + origWithOutExt + ".jp2");
                                                    if (!repFile.exists()) {
                                                        repFile = new File(repDir.getAbsolutePath()
                                                                + File.separator + origWithOutExt + ".gif");
                                                        if (!repFile.exists()) {
                                                            repFile = new File(repDir.getAbsolutePath()
                                                                    + File.separator + origWithOutExt + ".png");
                                                            if (!repFile.exists()) {
                                                                repFile = new File(repDir.getAbsolutePath()
                                                                        + File.separator + origWithOutExt
                                                                        + ".bmp");
                                                                if (!repFile.exists()) {
                                                                    other = true;
                                                                    LOGGER.logError(kostsimy
                                                                            .getTextResourceService()
                                                                            .getText(MESSAGE_XML_VALERGEBNIS));
                                                                    LOGGER.logError(kostsimy
                                                                            .getTextResourceService()
                                                                            .getText(MESSAGE_XML_COMPFILE,
                                                                                    origDir));
                                                                    LOGGER.logError(kostsimy
                                                                            .getTextResourceService().getText(
                                                                                    MESSAGE_XML_VALERGEBNIS_NOTVALIDATED));
                                                                    LOGGER.logError(
                                                                            kostsimy.getTextResourceService()
                                                                                    .getText(ERROR_NOREP,
                                                                                            origDir.getName()));
                                                                    LOGGER.logError(kostsimy
                                                                            .getTextResourceService().getText(
                                                                                    MESSAGE_XML_VALERGEBNIS_CLOSE));
                                                                }
                                                            }
                                                        }
                                                    }
                                                }
                                            }
                                        }
                                    }
                                }
                            }
                        }

                        if (!other) {
                            boolean compFile = compFile(origDir, logFileName, directoryOfLogfile, repFile,
                                    tmpDir);
                            if (compFile) {
                                // Vergleich bestanden
                                countIo = countIo + 1;
                            } else {
                                // Vergleich nicht bestanden
                                countNio = countNio + 1;
                            }
                        }
                    } else {
                        countNotVal = countNotVal + 1;
                        LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_VALERGEBNIS));
                        LOGGER.logError(
                                kostsimy.getTextResourceService().getText(MESSAGE_XML_COMPFILE, origDir));
                        LOGGER.logError(kostsimy.getTextResourceService()
                                .getText(MESSAGE_XML_VALERGEBNIS_NOTVALIDATED));
                        LOGGER.logError(
                                kostsimy.getTextResourceService().getText(MESSAGE_XML_VALERGEBNIS_CLOSE));
                    }
                } else {
                    countNotVal = countNotVal + 1;
                    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_VALERGEBNIS));
                    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_COMPFILE, origDir));
                    LOGGER.logError(
                            kostsimy.getTextResourceService().getText(MESSAGE_XML_VALERGEBNIS_NOTVALIDATED));
                    LOGGER.logError(
                            kostsimy.getTextResourceService().getText(ERROR_INCORRECTFILEENDING, origDir));
                    LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_VALERGEBNIS_CLOSE));
                }
            }
        }

        if (countNio == 0 && countIo == 0) {
            // keine Dateien verglichen
            LOGGER.logError(kostsimy.getTextResourceService().getText(ERROR_INCORRECTFILEENDINGS));
            System.out.println(kostsimy.getTextResourceService().getText(ERROR_INCORRECTFILEENDINGS));
        }

        float statIo = 100 / (float) count * (float) countIo;
        float statNio = 100 / (float) count * (float) countNio;
        float statUn = 100 - statIo - statNio;

        LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_IMAGE2));
        LOGGER.logError(
                kostsimy.getTextResourceService().getText(MESSAGE_XML_STATISTICS, statIo, statNio, statUn));
        LOGGER.logError(kostsimy.getTextResourceService().getText(MESSAGE_XML_LOGEND));
        // Zeitstempel End
        java.util.Date nowEnd = new java.util.Date();
        java.text.SimpleDateFormat sdfEnd = new java.text.SimpleDateFormat("dd.MM.yyyy HH:mm:ss");
        String ausgabeEnd = sdfEnd.format(nowEnd);
        ausgabeEnd = "<End>" + ausgabeEnd + "</End>";
        Util.valEnd(ausgabeEnd, logFile);
        Util.amp(logFile);

        // Die Konfiguration hereinkopieren
        try {
            DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
            factory.setValidating(false);

            factory.setExpandEntityReferences(false);

            Document docConfig = factory.newDocumentBuilder().parse(configFile);
            NodeList list = docConfig.getElementsByTagName("configuration");
            Element element = (Element) list.item(0);

            Document docLog = factory.newDocumentBuilder().parse(logFile);

            Node dup = docLog.importNode(element, true);

            docLog.getDocumentElement().appendChild(dup);
            FileWriter writer = new FileWriter(logFile);

            ByteArrayOutputStream baos = new ByteArrayOutputStream();
            ElementToStream(docLog.getDocumentElement(), baos);
            String stringDoc2 = new String(baos.toByteArray());
            writer.write(stringDoc2);
            writer.close();

            // Der Header wird dabei leider verschossen, wieder zurck ndern
            String newstring = kostsimy.getTextResourceService().getText(MESSAGE_XML_HEADER);
            String oldstring = "<?xml version=\"1.0\" encoding=\"UTF-8\"?><KOSTSimyLog>";
            Util.oldnewstring(oldstring, newstring, logFile);

        } catch (Exception e) {
            LOGGER.logError(
                    "<Error>" + kostsimy.getTextResourceService().getText(ERROR_XML_UNKNOWN, e.getMessage()));
            System.out.println("Exception: " + e.getMessage());
        }

        if (countNio == 0 && countIo == 0) {
            // keine Dateien verglichen bestehendes Workverzeichnis ggf. lschen
            if (tmpDir.exists()) {
                Util.deleteDir(tmpDir);
            }
            System.exit(1);
        } else if (countNio == 0) {
            // bestehendes Workverzeichnis ggf. lschen
            if (tmpDir.exists()) {
                Util.deleteDir(tmpDir);
            }
            // alle Validierten Dateien valide
            System.exit(0);
        } else {
            // bestehendes Workverzeichnis ggf. lschen
            if (tmpDir.exists()) {
                Util.deleteDir(tmpDir);
            }
            // Fehler in Validierten Dateien --> invalide
            System.exit(2);
        }
        if (tmpDir.exists()) {
            Util.deleteDir(tmpDir);
            tmpDir.deleteOnExit();
        }
    }
}

---

From source file:edu.kit.dama.util.test.LocalAccessTest.java

public static void main(String[] args) throws Exception {

    IFileTree tree = DataOrganizationUtils.createTreeFromFile("1q2345", new AbstractFile(new File(
            "/Users/jejkal/NetBeansProjects/KITDM/trunk/Docker/KITDM/share/log/cd37731e22d7df46722fa41efe2c5511ee83d3ee")),
            true);// w w w  .  j a  v  a2s.co m
    IDataOrganizationNode generatedNode = Util.getNodeByName(tree.getRootNode(),
            Constants.STAGING_GENERATED_FOLDER_NAME);

    //DataOrganizationUtils.printTree(tree.getRootNode(), true);
    DataOrganizationUtils.printTree((ICollectionNode) generatedNode, true);

    if (generatedNode == null || !(generatedNode instanceof ICollectionNode)
            || ((ICollectionNode) generatedNode).getChildren().isEmpty()) {
        System.out.println(
                "Node for 'generated' content not found or is empty. Skip registering view 'generated'.");
    } else {
        System.out.println("OK!");
    }
    if (true) {
        return;
    }

    //     DigitalObject c = DigitalObject.factoryNewDigitalObject();
    //System.out.println(c.getDigitalObjectIdentifier());
    /*   CustomDigitalObject c = new CustomDigitalObject();
    c.setDigitalObjectId(new DigitalObjectId(UUID.randomUUID().toString()));
    c.setLabel("TEst");
    c.setNote("ee123");
    System.out.println("EDS");
    mdm.save(c);
    System.out.println("ODN");*/
    // mdm.close();
    String accessKey = "admin";
    String accessSecret = "dama14";
    String restBaseUrl = "http://localhost:8080/KITDM";
    SimpleRESTContext context = new SimpleRESTContext(accessKey, accessSecret);
    /*  DigitalObject newDigitalObject= DigitalObject.factoryNewDigitalObject();
    newDigitalObject.setLabel("Sample DigitalObject");
    newDigitalObject.setNote("This is a sample");
    newDigitalObject.setStartDate(new Date());*/
    long s = System.currentTimeMillis();
    BaseMetaDataRestClient client;

    client = new BaseMetaDataRestClient(restBaseUrl + "/rest/basemetadata/", context);

    long t = 0;
    for (int i = 0; i < 100; i++) {

        DigitalObjectWrapper o = client.getDigitalObjectById(57l);
        t += (System.currentTimeMillis() - s);
        s = System.currentTimeMillis();
    }

    System.out.println("T " + (t / 100l));

    /*DigitalObject ob = o.getEntities().get(0);
    System.out.println(ob.getDigitalObjectIdentifier());
    System.out.println(ob.getDigitalObjectId().getStringRepresentation());*/
    /*Study newStudy =  Study.factoryNewStudy();
           newStudy.setTopic("Sample Study");
           newStudy.setNote("This is a sample");
           newStudy.setStartDate(new Date());
       Investigation newInvestigation= Investigation.factoryNewInvestigation();
           newInvestigation.setTopic("Sample Investigation");
           newInvestigation.setNote("This is a sample");
           newInvestigation.setStartDate(new Date());
            client = new BaseMetaDataRestClient(restBaseUrl + "/rest/basemetadata/", context);
            
           //Create a new study. The study will be assigned to the default group whose ID we've obtained above.
           StudyWrapper studyWrapper = client.addStudy(newStudy, Constants.USERS_GROUP_ID);
           //Assign returned study to 'newStudy' as the created entity now contains a valid studyId.
           newStudy = studyWrapper.getEntities().get(0);
            
           //Use the studyId to add a new investigation to the study we've just created.
           InvestigationWrapper investigationWrapper = client.addInvestigationToStudy(newStudy.getStudyId(), newInvestigation, Constants.USERS_GROUP_ID);
           //Assign returned investigation to 'newInvestigation' as the created entity now contains a valid investigationId.
           newInvestigation = investigationWrapper.getEntities().get(0);
            
           //Use the investigationId to add a new digital object to the investigation just created.
                   
           DigitalObjectWrapper digitalObjectWrapper = client.addDigitalObjectToInvestigation(newInvestigation.getInvestigationId(), newDigitalObject, Constants.USERS_GROUP_ID);
           //Assign returned digitalObject to 'newDigitalObject' as the created entity now contains a valid objectId.
           newDigitalObject = digitalObjectWrapper.getEntities().get(0);
           System.out.println("OK");
                   
            */
    /*StagingServiceRESTClient client = new StagingServiceRESTClient("http://localhost:8080/KITDM/rest/staging/", new SimpleRESTContext("admin", "dama14"));
            
           FileTreeImpl f = new FileTreeImpl();
           f.setDigitalObjectId(new DigitalObjectId("f735e33e-8821-460e-9d86-90281e6f91e1"));
           f.setViewName("default");
           CollectionNodeImpl col = new CollectionNodeImpl();
           col.setName("myImage");
           FileNodeImpl fi = new FileNodeImpl(new LFNImpl("file:/Users/jejkal/tmp/2016/5/16/admin/d83bdb349f073714cec972958ab5737e7fe28f27/data/images/StructureAdminMetadata.png"));
           fi.setNodeId(500l);
           col.addChild(fi);
           f.getRootNode().addChild(col);
            
           System.out.println(client.createDownload("f735e33e-8821-460e-9d86-90281e6f91e1", "273f477a-546c-41d7-9037-61723de4dd36", f, "USERS"));
            */

    /*String token = new String(Base64.getDecoder().decode("YWRtaW46ZGFtYTE0"));
    int splitIndex = token.indexOf(":");
    if (splitIndex < 1) {
        throw new UnauthorizedAccessAttemptException("Invalid basic authentication header.");
    }
            
    String user = token.substring(0, splitIndex);
    String secret = token.substring(splitIndex+1);
    System.out.println(user);
    System.out.println(secret);*/
    /* System.out.println(DigestUtils.md5Hex("admin:kitdm:dama14"));
        String md5a1 = DigestUtils.md5Hex("admin:kitdm:dama14");
            
                        String md5a2 = DigestUtils.md5Hex("GET:/KITDM/rest/basemetadata/investigations?groupId=USERS");
          Map<String, Object> custom = new HashMap<>();
           custom.put("repository.context", "empty");
           AdalapiProtocolConfiguration config = AdalapiProtocolConfiguration.factoryConfiguration(new URL("http://dreamatico.com/data_images/kitten/kitten-2.jpg"),SimpleHttp.class.getCanonicalName(), KITDMAuthenticator.class.getCanonicalName(), custom);
            
            
                   
                   
           String clientHash = "602ce28e72c44bf003556f4b0e5b678d";
           String serverDigest = DigestUtils.md5Hex(md5a1 + ":12345:" + md5a2);
                   
           System.out.println(md5a1);
        System.out.println(md5a2);
            
           System.out.println(serverDigest);
        System.out.println(clientHash);
            */
    /* String tokenKey = CryptUtil.stringToSHA1("test12345");
            System.out.println(tokenKey);
            IMetaDataManager mdm = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
            mdm.setAuthorizationContext(AuthorizationContext.factorySystemContext());
    ServiceAccessToken accessToken = ServiceAccessUtil.getAccessToken(mdm, tokenKey, "simpleRestToken");
           System.out.println(accessToken);*/
    // AbstractFile fi = new AbstractFile(new URL("http://ipelsdf1.lsdf.kit.edu:8889/webdav/admin/1/data/screen.jpg"));
    //SimpleRESTContext context = new SimpleRESTContext("admin", "dama14");

    /* UserGroupWrapper groupWrapper = client1.getAllGroups(0, Integer.MAX_VALUE);
    System.out.println("The following groups were found:");
    for (UserGroup group : groupWrapper.getEntities()) {
    System.out.println(" Name: " + group.getGroupName());
    UserDataWrapper members = client1.getUsersOfGroup(group.getId(), 0, Integer.MAX_VALUE);
    System.out.println(" The group has the following members:");
    for (UserData user : members.getEntities()) {
        System.out.println("   - " + user.getFullname() + " (" + user.getDistinguishedName() + ")" + user.getUserId());
    }
    }
    //  client1.addGroup("uniqueId", "Another Custom Group", "A custom group created for testing purposes.");
            
    UserDataWrapper userWrapper = client1.getAllUsers(Constants.USERS_GROUP_ID, 0, Integer.MAX_VALUE);
    for (UserData user : userWrapper.getEntities()) {
    System.out.println(" - " + user.getFullname() + " (" + user.getDistinguishedName() + ")");
    }
            
    //distinguished name or id
    int modified = client1.addUserToGroup(3l, "tester").getCount();
            
    System.out.println(client1.removeUserFromGroup(3l, 421l).getCount());
     */
    /* UserDataWrapper newUser = client1.addUser(Constants.USERS_GROUP_ID, "Test", "User", "test@mail.org", newUserIdentifier);
           System.out.println(newUser.getEntities().get(0).getDistinguishedName());
           //distinguished name or id
           int modified = client1.addUserToGroup(3l, newUserIdentifier).getCount();
            */
    /*  UserGroupWrapper groupWrapper = client.getAllGroups(0, Integer.MAX_VALUE);
            
           for (UserGroup group : groupWrapper.getEntities()) {
    System.out.println("GName: " + group.getGroupName());
           }
            
           UserDataWrapper userWrapper = client.getAllUsers("eCod", 0, Integer.MAX_VALUE);
           for (UserData user : userWrapper.getEntities()) {
    System.out.println("UName: " + user.getDistinguishedName());
            
           }*/
    //        AbstractRandomDataProviderStrategy stra = new AbstractRandomDataProviderStrategy() {
    //            @Override
    //            public Long getLong(AttributeMetadata attributeMetadata) {
    //                if (attributeMetadata.getAttributeName().toLowerCase().contains("id")) {
    //                    return 0l;
    //                }
    //                return super.getLong(attributeMetadata); //To change body of generated methods, choose Tools | Templates.
    //            }
    //
    //            @Override
    //            public Object getMemoizedObject(AttributeMetadata attributeMetadata) {
    //                if (attributeMetadata != null && attributeMetadata.getAttributeName() != null) {
    //                    switch (attributeMetadata.getAttributeName()) {
    //                        case "validFrom":
    //                            return new Date(0);
    //                        case "startDate":
    //                            return new Date(0);
    //                        case "validUntil":
    //                            return new Date(System.currentTimeMillis());
    //                        case "endDate":
    //                            return new Date(System.currentTimeMillis());
    //                        case "uploadDate":
    //                            return new Date(System.currentTimeMillis());
    //                    }
    //                }
    //                return super.getMemoizedObject(attributeMetadata);
    //            }
    //
    //        };
    //        stra.setDefaultNumberOfCollectionElements(1);       
    //        PodamFactory factory = new PodamFactoryImpl(stra);
    //
    //        DigitalObject a2 = factory.manufacturePojo(DigitalObject.class);
    //
    //        IMetaDataManager mdm = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
    //        mdm.setAuthorizationContext(AuthorizationContext.factorySystemContext());
    //        a2 = mdm.save(a2);
    //
    //        System.out.println(a2);
    if (true) {
        return;
    }

    /*String content = org.apache.commons.io.FileUtils.readFileToString(new File("/Users/jejkal/Software/GenericRestClient-1.2/bin/data/default_view.json"));
    JSONObject viewObject = new JSONObject(content);
    IFileTree tree1 = Util.jsonViewToFileTree(viewObject, true, false);
    DataOrganizationUtils.printTree(tree1.getRootNode(), true);*/
    /*AdalapiProtocolConfiguration config = AdalapiProtocolConfiguration.factoryConfiguration(new URL("http://localhost:8080"), "edu.kit.lsdf.adalapi.protocols.WebDav", "edu.kit.dama.staging.adalapi.authenticator.KITDMAuthenticator", null);
           IMetaDataManager mdm = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
           mdm.setAuthorizationContext(AuthorizationContext.factorySystemContext());
           System.out.println("RESULT " + mdm.save(config));
            
           DatabaseProtocolConfigurator config1 = new DatabaseProtocolConfigurator();
           ProtocolSettings.getSingleton().setExternalProtocolConfigurator(config1);
            
           Configuration configuration = config1.getConfiguration(new URL("http://localhost:8080"));
           Iterator keys = configuration.getKeys();
           while (keys.hasNext()) {
    String key = (String) keys.next();
    System.out.println(key + " - " + configuration.getString(key));
           }*/
    //SardineImpl impl = new SardineImpl("webdav", "webdav");
    //impl.enablePreemptiveAuthentication(new URL("http://127.0.0.1:8080/webdav/admin/1/data/index.html"));
    //impl.setCredentials("webdav", "webdav");
    //System.out.println(impl.get("http://webdav@127.0.0.1:8080/webdav/admin/1/data/index.html"));
    //System.out.println(impl.exists("http://webdav@ipesuco1.ipe.kit.edu:10000/"));
    /*Configuration config = new DatabaseProtocolConfigurator().getConfiguration(new URL("http://localhost:8080/webdav/admin/1/data/index.html"));
    config.addProperty("username", "webdav");
    config.addProperty("password", "webdav");
            
    AbstractFile file = new AbstractFile(new URL("http://localhost:8080/webdav/admin/1/data/index.html"));
    System.out.println(file.exists());
            
    /* Configuration config1 = new DatabaseProtocolConfigurator().getConfiguration(new URL("http://localhost:8080/webdav/admin/1/data/index.html"));
    config1.addProperty("username", "webdav1");
    config1.addProperty("password", "webdav1");
     */
    /* AbstractFile file2 = new AbstractFile(new URL("http://localhost:8080/webdav/admin/1/data/index.html"));
           System.out.println(file2.exists());*/
    // createDestination("1", new AuthorizationContext(new UserId("admin"), new GroupId("USERS"), Role.ADMINISTRATOR));
    //  System.out.println(file.exists());
    ///////////
    //          long investigationId = -1l;
    //        int first = 0;
    //        int results = 10;
    //         List<DigitalObject> objects;
    //            if (investigationId <= 0) {
    //                //no investigationId provided...get all objects
    //                mdm.addProperty(MetaDataManagerJpa.JAVAX_PERSISTENCE_FETCHGRAPH, "DigitalObject.simple");
    //                objects = mdm.findResultList("SELECT o FROM DigitalObject o", DigitalObject.class, first, results);
    //            } else {
    //                //first, obtain investigation for id
    //                mdm.addProperty(MetaDataManagerJpa.JAVAX_PERSISTENCE_FETCHGRAPH, "Investigation.simple");
    //                Investigation investigation = mdm.find(Investigation.class, investigationId);
    //                if (investigation == null) {
    //                    LOGGER.error("Investigation for id {} not found.", investigationId);
    //                    throw new WebApplicationException(Response.Status.NOT_FOUND);
    //                }
    //                //try to get objects in investigation
    //                mdm.addProperty(MetaDataManagerJpa.JAVAX_PERSISTENCE_FETCHGRAPH, "DigitalObject.simple");
    //                objects = mdm.findResultList("SELECT o FROM DigitalObject o WHERE o.investigation.investigationId=" + investigationId, DigitalObject.class, first, results);
    //            }
    ////////
    /* BaseMetaDataRestClient cl = new BaseMetaDataRestClient("http://ipesuco1.ipe.kit.edu:8080/KITDM/rest/basemetadata/", new SimpleRESTContext("admin", "dama14"));
    DigitalObjectWrapper w = cl.getAllDigitalObjects(63l, 0, 100, "eCod");
            
    System.out.println("Time2: " + (System.currentTimeMillis() - s));
     */
    //DataOrganizationRestClient doClient = new DataOrganizationRestClient("http://localhost:8080/KITDM/rest/dataorganization/", new SimpleRESTContext("admin", "dama14"));
    /* DataOrganizer org = DataOrganizerFactory.getInstance().getDataOrganizer();
    IFileTree tree1 = org.loadFileTree(new DigitalObjectId("ef16c1e5-d9b3-44b5-ba77-b9877082d02c"), "default");
            
    IFileTree sub = org.loadSubTree(new NodeId(new DigitalObjectId("ef16c1e5-d9b3-44b5-ba77-b9877082d02c"), 400l,1), 0);
            
    DataOrganizationUtils.printTree(sub.getRootNode(), true);*/

    /* FileTreeImpl newTree = new FileTreeImpl();
           newTree.setDigitalObjectId(new DigitalObjectId("ef16c1e5-d9b3-44b5-ba77-b9877082d02c"));
           newTree.setViewName("custom");
           CollectionNodeImpl images = new CollectionNodeImpl();
           images.setNodeId(400l);
            
           CollectionNodeImpl documents = new CollectionNodeImpl();
           documents.setName("documents");
           FileNodeImpl fDocumentation = new FileNodeImpl(null);
           fDocumentation.setNodeId(200l);
           documents.addChild(fDocumentation);
           newTree.getRootNode().addChild(images);
           newTree.getRootNode().addChild(documents);
            
           doClient.postView("USERS", 31l, newTree, Boolean.TRUE, new SimpleRESTContext("admin", "dama14"));
            */
    /* DataOrganizer org = DataOrganizerFactory.getInstance().getDataOrganizer();
           IFileTree tree1 = org.loadFileTree(new DigitalObjectId("ef16c1e5-d9b3-44b5-ba77-b9877082d02c"), "custom");
            
           DataOrganizationUtils.printTree(tree1.getRootNode(), true);*/
    DataOrganizer dor = DataOrganizerFactory.getInstance().getDataOrganizer();
    //dor.configure("http://localhost:7474", "neo4j", "test");
    // edu.kit.dama.mdm.dataorganization.impl.jpa.DataOrganizerImpl dor = new edu.kit.dama.mdm.dataorganization.impl.jpa.DataOrganizerImpl();

    // IFileTree tree = DataOrganizationUtils.createTreeFromFile("Large4", new AbstractFile(new File("/Users/jejkal/NetBeansProjects/KITDM/trunk")), true);
    //edu.kit.dama.mdm.dataorganization.impl.jpa.DataOrganizerImpl dor = new edu.kit.dama.mdm.dataorganization.impl.jpa.DataOrganizerImpl();       
    // System.out.println("Create tree");
    //  dor.createFileTree(tree);
    System.out.println("DONE");
    s = System.currentTimeMillis();

    System.out.println(dor.getViews(new DigitalObjectId("Large4")));
    //dor.createFileTree(tree);
    System.out.println("R " + (System.currentTimeMillis() - s));

    if (true) {
        return;
    }

    //  IMetaDataManager mdm1 = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
    // mdm1.addProperty(MetaDataManagerJpa.JAVAX_PERSISTENCE_FETCHGRAPH, "DigitalObject.simple");
    //   AuthorizationContext ctx1 = new AuthorizationContext(new UserId("admin"), new GroupId("eCod"), Role.ADMINISTRATOR);
    //   mdm1.setAuthorizationContext(ctx1);*/
    /* StringBuilder query = new StringBuilder();
    IMetaDataManager mdm1 = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
    mdm1.setAuthorizationContext(ctx1);
    String domain = SecurableEntityHelper.getSecurableResourceDomain(DigitalObject.class);
    String uniqueField = SecurableEntityHelper.getDomainUniqueFieldName(DigitalObject.class);
            
    query.append("SELECT o FROM FilterHelper f, ").
        append("DigitalObject").append(" o WHERE ");
            
    query.append("f.userId='").append(ctx1.getUserId().getStringRepresentation());
    query.append("' AND ");
            
    query.append("f.groupId='").append(ctx1.getGroupId().getStringRepresentation()).append("' AND ")
        .append("f.domainId='").append(domain).
        append("' AND f.roleAllowed>=").append(Role.GUEST.ordinal()).
        append(" AND f.domainUniqueId=o.").append(uniqueField);
            
    long s1 = System.currentTimeMillis();
            
    List<DigitalObject> result2 = mdm1.findResultList(query.toString(), DigitalObject.class, 0, 100);
    System.out.println("D: " + (System.currentTimeMillis() - s1));*/
    /*for(int i=0;i<100;i++){
       if(result1.get(i).getDigitalObjectId().equals(result2.get(i).getDigitalObjectId())){
           System.out.println("ERROR ");
           System.out.println(result1.get(i));
           System.out.println("=====================");
           System.out.println(result2.get(i));
           System.out.println("===================");
           System.out.println(i);
       }
    }*/
    if (true) {
        return;
    }
    //        IMetaDataManager mdm = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
    //        AuthorizationContext ctx = new AuthorizationContext(new UserId("admin"), new GroupId("eCod"), Role.ADMINISTRATOR);
    //        mdm.setAuthorizationContext(ctx);
    //        long s = System.currentTimeMillis();
    //        //System.out.println(new DigitalObjectSecureQueryHelper().getReadableResources(mdm, 0, 100, ctx).size());
    //        System.out.println("Time: " + (System.currentTimeMillis() - s));
    //        s = System.currentTimeMillis();
    //        mdm.addProperty(MetaDataManagerJpa.JAVAX_PERSISTENCE_FETCHGRAPH, "DigitalObject.default");
    //        System.out.println(mdm.findResultList("SELECT o FROM DigitalObject o", DigitalObject.class, 0, 100).size());
    //        System.out.println("Time2: " + (System.currentTimeMillis() - s));
    //        if (true) {
    //            return;
    //        }

    //        IMetaDataManager mdm = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
    //        //mdm.setAuthorizationContext(new AuthorizationContext(new UserId("admin"), new GroupId("eCod"), Role.MANAGER));
    //        mdm.setAuthorizationContext(AuthorizationContext.factorySystemContext());
    //        mdm.addProperty(MetaDataManagerJpa.JAVAX_PERSISTENCE_FETCHGRAPH, "DigitalObject.default");
    //        long s = System.currentTimeMillis();
    //        DigitalObject result = mdm.find(DigitalObject.class, 1000l);
    //        System.out.println(result.getBaseId());
    //        System.out.println(result.getLabel());
    //        System.out.println(result.getInvestigation().getInvestigationId());
    //        System.out.println(result.getInvestigation().getTopic());
    //        /* System.out.println(result.getStudyId());
    //         System.out.println(result.getTopic());*/
    //        System.out.println("TIME: " + (System.currentTimeMillis() - s));
    //        // System.out.println(result.getInvestigations().size());

    /* System.out.println(result.getBaseId());
     System.out.println(result.getLabel());
     System.out.println(result.getNote());
     System.out.println("--------");
     mdm.addProperty(MetaDataManagerJpa.JAVAX_PERSISTENCE_FETCHGRAPH, "DigitalObject.default");
     result = mdm.save(result);
     System.out.println(result.getBaseId());
     System.out.println(result.getLabel());
     System.out.println(result.getNote());
     System.out.println("--------");
     result = mdm.find(DigitalObject.class).get(0);
     System.out.println(result.getBaseId());
     System.out.println(result.getLabel());
     System.out.println(result.getNote());*/

    /* System.out.println("TOPIC " + result.get(0).getTopic());
            System.out.println("NOT " + result.get(0).getNote());
            System.out.println("INV " + result.get(0).getInvestigations());
            System.out.println("DO " + ((Investigation) result.get(0).getInvestigations().toArray()[0]).getDataSets());*/
    if (true) {
        return;
    }

    //        long t = System.currentTimeMillis();
    //
    //        AbstractRandomDataProviderStrategy stra = new AbstractRandomDataProviderStrategy() {
    //        };
    //        stra.setDefaultNumberOfCollectionElements(1);
    //        PodamFactory factory = new PodamFactoryImpl(stra);
    //        DigitalObject a = factory.manufacturePojo(DigitalObject.class);
    //        DigitalObject a2 = factory.manufacturePojoWithFullData(DigitalObject.class);
    //
    //        //for (int i = 0; i < 10; i++) {
    //        //  long s = System.currentTimeMillis();
    //        Marshaller marshaller = org.eclipse.persistence.jaxb.JAXBContext.newInstance(DigitalObject.class).createMarshaller();
    //        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
    //        marshaller.setProperty("eclipselink.media-type", "application/json");
    //        marshaller.setProperty(MarshallerProperties.OBJECT_GRAPH, "default");
    //        marshaller.marshal(a, System.out);
    //        marshaller.marshal(a2, System.out);
    //        //  t += System.currentTimeMillis() - s;
    //        // }
    //        System.out.println("D " + (System.currentTimeMillis() - t));
    //        if (true) {
    //            return;
    //        }
    Document docDigitalObject = null;
    String completeXml = null;

    String baseXML = DigitalObject2Xml.getXmlString(DigitalObject.factoryNewDigitalObject());

    try {
        ByteArrayInputStream bin = new ByteArrayInputStream(baseXML.getBytes());
        docDigitalObject = JaxenUtil.getW3CDocument(bin);//XMLTools.parseDOM(baseXML);
    } catch (Exception exc) {
        throw new MetaDataExtractionException("Failed to transform DigitalObject XML.", exc);
    }

    Element digitalObjectElement = docDigitalObject.getDocumentElement();

    Document completeDocument = null;
    try {
        completeDocument = DocumentBuilderFactory.newInstance().newDocumentBuilder().newDocument();
    } catch (ParserConfigurationException ex) {
        throw new MetaDataExtractionException("Failed to generate target document.", ex);
    }
    Element rootElement = completeDocument.createElement("test");

    Element root = completeDocument.createElementNS(BaseMetaDataHelper.DAMA_NAMESPACE_BASEMETADATA,
            BaseMetaDataHelper.DAMA_NAMESPACE_PREFIX);
    root.appendChild(completeDocument.importNode(digitalObjectElement, true));
    Node csmdRoot = root.appendChild(completeDocument.createElementNS(
            BaseMetaDataHelper.DAMA_NAMESPACE_METADATA, BaseMetaDataHelper.CSMD_NAMESPACE_PREFIX));
    csmdRoot.appendChild(completeDocument.importNode(rootElement, true));

    completeDocument.appendChild(root);
    root.setAttributeNS("http://www.w3.org/2001/XMLSchema-instance", "xsi:schemaLocation",
            BaseMetaDataHelper.DAMA_NAMESPACE_METADATA + " " + BaseMetaDataHelper.DAMA_NAMESPACE_BASEMETADATA
                    + "/MetaData.xsd");
    // convert tweaked DOM back to XML string
    try {
        completeXml = getStringFromDocument(completeDocument);//XMLTools.getXML(completeDocument);
    } catch (Exception exc) {
        throw new MetaDataExtractionException("Internal XML conversion error.", exc);
    }
    System.out.println(completeXml);

    //    IMetaDataManager mdm = MetaDataManagement.getMetaDataManagement().getMetaDataManager();
    //    IAuthorizationContext context = new AuthorizationContext(new UserId("admin"), new GroupId(Constants.USERS_GROUP_ID), Role.ADMINISTRATOR);//AuthorizationContext.factorySystemContext();
    //    mdm.setAuthorizationContext(context);
    //    try {
    //      //TransferClientProperties props = new TransferClientProperties();
    //      //props.setStagingAccessPointId("0000-0000-0000-0000");
    //      //IngestInformationServiceLocal.getSingleton().prepareIngest(new DigitalObjectId("c98408fc-36d0-4cc0-8197-340873d6698e"), props, context);
    //
    //      //System.out.println(StagingService.getSingleton().finalizeIngest(new DigitalObjectId("c98408fc-36d0-4cc0-8197-340873d6698e"), context));
    //      System.out.println(MetadataIndexingHelper.getSingleton().performIndexing("KITDataManager", "dc", new GroupId("USERS"), 10, context));
    //    } finally {
    //      mdm.close();
    //    }
}

---

From source file:ebay.Ebay.java

/**
 * @param args the command line arguments
 *//*from   ww  w  .j  a v a2 s.c o m*/
public static void main(String[] args) {
    HttpClient client = null;
    HttpResponse response = null;
    BufferedReader rd = null;
    Document doc = null;
    String xml = "";
    EbayDAO<Producto> db = new EbayDAO<>(Producto.class);
    String busqueda;

    while (true) {
        busqueda = JOptionPane.showInputDialog(null, "ingresa una busqueda");
        if (busqueda != null) {
            busqueda = busqueda.replaceAll(" ", "%20");
            try {
                client = new DefaultHttpClient();
                /*
                 peticion GET
                 */
                HttpGet request = new HttpGet("http://open.api.ebay.com/shopping?" + "callname=FindPopularItems"
                        + "&appid=student11-6428-4bd4-ac0d-6ed9d84e345" + "&version=517&QueryKeywords="
                        + busqueda + "&siteid=0" + "&responseencoding=XML");
                /*
                 se ejecuta la peticion GET
                 */
                response = client.execute(request);
                rd = new BufferedReader(new InputStreamReader(response.getEntity().getContent()));
                /*
                 comienza la lectura de la respuesta a la peticion GET
                 */
                String line;
                while ((line = rd.readLine()) != null) {
                    xml += line + "\n";
                }
            } catch (IOException ex) {
                Logger.getLogger(Ebay.class.getName()).log(Level.SEVERE, null, ex);
            }

            /*
             creamos nuestro documentBulder(documento constructor) y obtenemos 
             nuestro objeto documento apartir de documentBuilder
             */
            try {
                DocumentBuilder documentBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
                doc = documentBuilder.parse(new InputSource(new ByteArrayInputStream(xml.getBytes("utf-8"))));
            } catch (ParserConfigurationException | SAXException | IOException ex) {
                Logger.getLogger(Ebay.class.getName()).log(Level.SEVERE, null, ex);
            }

            Element raiz = doc.getDocumentElement();
            if (raiz == null) {
                System.exit(0);
            }
            if (raiz.getElementsByTagName("Ack").item(0).getTextContent().equals("Success")) {
                NodeList array = raiz.getElementsByTagName("ItemArray").item(0).getChildNodes();
                for (int i = 0; i < array.getLength(); ++i) {
                    Node n = array.item(i);

                    if (n.getNodeType() != Node.TEXT_NODE) {
                        Producto p = new Producto();
                        if (((Element) n).getElementsByTagName("ItemID").item(0) != null)
                            p.setId(new Long(
                                    ((Element) n).getElementsByTagName("ItemID").item(0).getTextContent()));
                        if (((Element) n).getElementsByTagName("EndTime").item(0) != null)
                            p.setEndtime(
                                    ((Element) n).getElementsByTagName("EndTime").item(0).getTextContent());
                        if (((Element) n).getElementsByTagName("ViewItemURLForNaturalSearch").item(0) != null)
                            p.setViewurl(((Element) n).getElementsByTagName("ViewItemURLForNaturalSearch")
                                    .item(0).getTextContent());
                        if (((Element) n).getElementsByTagName("ListingType").item(0) != null)
                            p.setListingtype(
                                    ((Element) n).getElementsByTagName("ListingType").item(0).getTextContent());
                        if (((Element) n).getElementsByTagName("GalleryURL").item(0) != null)
                            p.setGalleryurl(
                                    ((Element) n).getElementsByTagName("GalleryURL").item(0).getTextContent());
                        if (((Element) n).getElementsByTagName("PrimaryCategoryID").item(0) != null)
                            p.setPrimarycategoryid(new Integer(((Element) n)
                                    .getElementsByTagName("PrimaryCategoryID").item(0).getTextContent()));
                        if (((Element) n).getElementsByTagName("PrimaryCategoryName").item(0) != null)
                            p.setPrimarycategoryname(((Element) n).getElementsByTagName("PrimaryCategoryName")
                                    .item(0).getTextContent());
                        if (((Element) n).getElementsByTagName("BidCount").item(0) != null)
                            p.setBidcount(new Integer(
                                    ((Element) n).getElementsByTagName("BidCount").item(0).getTextContent()));
                        if (((Element) n).getElementsByTagName("ConvertedCurrentPrice").item(0) != null)
                            p.setConvertedcurrentprice(new Double(((Element) n)
                                    .getElementsByTagName("ConvertedCurrentPrice").item(0).getTextContent()));
                        if (((Element) n).getElementsByTagName("ListingStatus").item(0) != null)
                            p.setListingstatus(((Element) n).getElementsByTagName("ListingStatus").item(0)
                                    .getTextContent());
                        if (((Element) n).getElementsByTagName("TimeLeft").item(0) != null)
                            p.setTimeleft(
                                    ((Element) n).getElementsByTagName("TimeLeft").item(0).getTextContent());
                        if (((Element) n).getElementsByTagName("Title").item(0) != null)
                            p.setTitle(((Element) n).getElementsByTagName("Title").item(0).getTextContent());
                        if (((Element) n).getElementsByTagName("ShippingServiceCost").item(0) != null)
                            p.setShippingservicecost(new Double(((Element) n)
                                    .getElementsByTagName("ShippingServiceCost").item(0).getTextContent()));
                        if (((Element) n).getElementsByTagName("ShippingType").item(0) != null)
                            p.setShippingtype(((Element) n).getElementsByTagName("ShippingType").item(0)
                                    .getTextContent());
                        if (((Element) n).getElementsByTagName("WatchCount").item(0) != null)
                            p.setWatchcount(new Integer(
                                    ((Element) n).getElementsByTagName("WatchCount").item(0).getTextContent()));
                        if (((Element) n).getElementsByTagName("ListedShippingServiceCost").item(0) != null)
                            p.setListedshippingservicecost(
                                    new Double(((Element) n).getElementsByTagName("ListedShippingServiceCost")
                                            .item(0).getTextContent()));
                        try {
                            db.insert(p);
                        } catch (Exception e) {
                            db.update(p);
                        }
                    }
                }
            }
            Ventana.crear(xml);
        } else
            System.exit(0);

    }
}

---

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