Example usage for org.springframework.transaction.annotation Propagation MANDATORY

List of usage examples for org.springframework.transaction.annotation Propagation MANDATORY

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In this page you can find the example usage for org.springframework.transaction.annotation Propagation MANDATORY.

Prototype

Propagation MANDATORY

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Document

Support a current transaction, throw an exception if none exists.

Usage

From source file:com.epam.catgenome.dao.BiologicalDataItemDao.java

/**
 * Finds files with names matching a specified file name, performs substring, case insensitive search
 * @param name search query//  w w w  . j a v  a 2 s  .co m
 * @return {@code List} of files with a matching name
 */
@Transactional(propagation = Propagation.MANDATORY)
public List<BiologicalDataItem> loadFilesByName(final String name) {
    final MapSqlParameterSource params = new MapSqlParameterSource();
    params.addValue(BiologicalDataItemParameters.NAME.name(), "%" + name.toLowerCase() + "%");
    return getNamedParameterJdbcTemplate().query(loadBiologicalDataItemsByNameQuery, params, getRowMapper());
}

From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java

/**
 * Loads a persisted {@code Reference} entity from the database by a specified ID
 * @param referenceId {@code Reference} ID to load
 * @return loaded {@code Reference} instance
 *///from  w  w  w  .j av a 2 s.co  m
@Transactional(propagation = Propagation.MANDATORY)
public Reference loadReferenceGenome(final Long referenceId) {
    final List<Reference> list = getNamedParameterJdbcTemplate().query(loadReferenceGenomeByIdQuery,
            new MapSqlParameterSource(GenomeParameters.REFERENCE_GENOME_ID.name(), referenceId),
            GenomeParameters.getReferenceGenomeMapper());
    return CollectionUtils.isNotEmpty(list) ? list.get(0) : null;
}

From source file:org.bytesoft.bytetcc.supports.spring.CompensableAnnotationValidator.java

private void validateTransactionalPropagation(Method method, Class<?> clazz) throws IllegalStateException {
    Transactional transactional = method.getAnnotation(Transactional.class);
    if (transactional == null) {
        Class<?> declaringClass = method.getDeclaringClass();
        transactional = declaringClass.getAnnotation(Transactional.class);
    }//ww w.j av a 2s .  c  o  m

    if (transactional == null) {
        throw new IllegalStateException(
                String.format("Method(%s) must be specificed a Transactional annotation!", method));
    }
    Propagation propagation = transactional.propagation();
    if (Propagation.REQUIRED.equals(propagation) == false //
            && Propagation.MANDATORY.equals(propagation) == false //
            && Propagation.REQUIRES_NEW.equals(propagation) == false) {
        throw new IllegalStateException(
                String.format("Method(%s) not support propagation level: %s!", method, propagation.name()));
    }
}

From source file:com.epam.catgenome.dao.DaoHelper.java

@Transactional(propagation = Propagation.MANDATORY)
public Long createTempStringList(final Long listId, final Collection<String> list) {
    Assert.notNull(listId);/*  www.  j ava2  s  .c o m*/
    Assert.isTrue(CollectionUtils.isNotEmpty(list));
    // creates a new local temporary table if it doesn't exists to handle temporary lists
    getJdbcTemplate().update(createTemporaryStringListQuery);
    // fills in a temporary list by given values
    int i = 0;
    final Iterator<String> iterator = list.iterator();
    final MapSqlParameterSource[] batchArgs = new MapSqlParameterSource[list.size()];
    while (iterator.hasNext()) {
        MapSqlParameterSource params = new MapSqlParameterSource();
        params.addValue(HelperParameters.LIST_ID.name(), listId);
        params.addValue(HelperParameters.LIST_VALUE.name(), iterator.next());
        batchArgs[i] = params;
        i++;
    }
    getNamedParameterJdbcTemplate().batchUpdate(insertTemporaryStringListItemQuery, batchArgs);
    return listId;
}

From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java

/**
 * Loads a persisted {@code Reference} entity from the database by a specified Biological dataItemID
 * @param itemID {@code Reference} Biological DataItemID to load
 * @return loaded {@code Reference} instance
 *///from  ww  w.j a v  a  2s  . c  o m
@Transactional(propagation = Propagation.MANDATORY)
public Reference loadReferenceGenomeByBioItemId(final Long itemID) {
    final List<Reference> list = getNamedParameterJdbcTemplate().query(loadReferenceGenomeByBioIdQuery,
            new MapSqlParameterSource(GenomeParameters.BIO_DATA_ITEM_ID.name(), itemID),
            GenomeParameters.getReferenceGenomeMapper());
    return CollectionUtils.isNotEmpty(list) ? list.get(0) : null;
}

From source file:com.epam.catgenome.dao.vcf.VcfFileDao.java

/**
 * Load sample metadata from the database for all files, corresponding the given reference ID.
 *
 * @param vcfFileId {@code long} reference ID for which files samples were saved.
 * @return {@code Map&lt;Long, List&lt;Sample&gt;&gt;} with file IDs for giver reference ID as keys, and with
 * lists of samples, corresponding this file IDs as values.
 */// w w  w  . jav  a2s .c  om
@Transactional(propagation = Propagation.MANDATORY)
public Map<Long, List<VcfSample>> loadSamplesForFilesByReference(long vcfFileId) {
    Map<Long, List<VcfSample>> sampleFileMap = new HashMap<>();

    getJdbcTemplate().query(loadSamplesForFilesByReferenceIdQuery, rs -> {
        Long fileId = rs.getLong(SampleParameters.VCF_ID.name());
        if (!sampleFileMap.containsKey(fileId)) {
            sampleFileMap.put(fileId, new ArrayList<>());
        }

        VcfSample sample = new VcfSample();

        sample.setId(rs.getLong(SampleParameters.VCF_SAMPLE_ID.name()));
        sample.setName(rs.getString(SampleParameters.SAMPLE_NAME.name()));
        sample.setIndex(rs.getInt(SampleParameters.ORDER_INDEX.name()));

        sampleFileMap.get(fileId).add(sample);
    }, vcfFileId);

    return sampleFileMap;
}

From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java

/**
 * Loads all persisted {@code Reference} entities from the database
 * @return all {@code Reference} instances, saved in the database
 *///  ww w  .  j a  v  a2  s  .  c o m
@Transactional(propagation = Propagation.MANDATORY)
public List<Reference> loadAllReferenceGenomes() {
    return getNamedParameterJdbcTemplate().query(loadAllReferenceGenomesQuery,
            GenomeParameters.getReferenceGenomeMetaDataMapper());
}

From source file:com.epam.catgenome.dao.DaoHelper.java

@Transactional(propagation = Propagation.MANDATORY)
public Long createTempList(final Long listId, final Collection<? extends BaseEntity> list) {
    Assert.notNull(listId);/*from   w w w .j a va 2  s. c om*/
    Assert.isTrue(CollectionUtils.isNotEmpty(list));
    // creates a new local temporary table if it doesn't exists to handle temporary lists
    getJdbcTemplate().update(createTemporaryListQuery);
    // fills in a temporary list by given values
    int i = 0;
    final Iterator<? extends BaseEntity> iterator = list.iterator();
    final MapSqlParameterSource[] batchArgs = new MapSqlParameterSource[list.size()];
    while (iterator.hasNext()) {
        MapSqlParameterSource params = new MapSqlParameterSource();
        params.addValue(HelperParameters.LIST_ID.name(), listId);
        params.addValue(HelperParameters.LIST_VALUE.name(), iterator.next().getId());
        batchArgs[i] = params;
        i++;
    }
    getNamedParameterJdbcTemplate().batchUpdate(insertTemporaryListItemQuery, batchArgs);
    return listId;
}

From source file:com.epam.catgenome.dao.reference.ReferenceGenomeDao.java

/**
 * Saves {@code List} of {@code Chromosome} entities with a specified ID in the database
 * as one reference//ww w.j a v a2s .c  o m
 * @param referenceId for the chromosomes
 * @param chromosomes {@code List} of {@code Chromosome} entities to store int the database
 * @return an array containing the numbers of rows affected by each update in the batch
 */
@Transactional(propagation = Propagation.MANDATORY)
public int[] saveChromosomes(final Long referenceId, final List<Chromosome> chromosomes) {
    final int count = chromosomes.size();
    final List<Long> chromosomeIds = daoHelper.createIds(chromosomeSequenceName, count);
    final MapSqlParameterSource[] batchArgs = new MapSqlParameterSource[count];
    for (int i = 0; i < count; i++) {
        final Chromosome chromosome = chromosomes.get(i);
        chromosome.setId(chromosomeIds.get(i));
        chromosome.setReferenceId(referenceId);
        MapSqlParameterSource params = new MapSqlParameterSource();
        params.addValue(GenomeParameters.NAME.name(), chromosome.getName());
        params.addValue(GenomeParameters.SIZE.name(), chromosome.getSize());
        params.addValue(GenomeParameters.PATH.name(), chromosome.getPath());
        params.addValue(GenomeParameters.HEADER.name(), chromosome.getHeader());
        params.addValue(GenomeParameters.CHROMOSOME_ID.name(), chromosome.getId());
        params.addValue(GenomeParameters.REFERENCE_GENOME_ID.name(), chromosome.getReferenceId());
        batchArgs[i] = params;
    }
    return getNamedParameterJdbcTemplate().batchUpdate(createChromosomeQuery, batchArgs);
}

From source file:com.bitsofproof.supernode.model.JpaStore.java

@Override
@Transactional(propagation = Propagation.MANDATORY)
public void storeColor(StoredColor color) {
    entityManager.persist(color);
}