Example usage for org.springframework.security.core.context SecurityContextHolder setContext

Introduction

In this page you can find the example usage for org.springframework.security.core.context SecurityContextHolder setContext.

Prototype

public static void setContext(SecurityContext context)

Source Link

Document

Associates a new SecurityContext with the current thread of execution.

Usage

From source file:ubic.gemma.loader.expression.arrayDesign.ArrayDesignProbeMapperServiceImpl.java

/**
 * @param queue/* w ww . j  a va2 s .c om*/
 * @param generatorDone
 * @param loaderDone
 */
private void load(final BlockingQueue<BlatAssociation> queue, final AtomicBoolean generatorDone,
        final AtomicBoolean loaderDone) {
    final SecurityContext context = SecurityContextHolder.getContext();
    assert context != null;

    Thread loadThread = new Thread(new Runnable() {
        @Override
        public void run() {
            SecurityContextHolder.setContext(context);
            doLoad(queue, generatorDone, loaderDone);
        }

    }, "PersistBlatAssociations");

    loadThread.start();

}

From source file:ubic.gemma.loader.genome.gene.ncbi.NcbiGeneLoader.java

/**
 * @param geneQueue a blocking queue of genes to be loaded into the database loads genes into the database
 * @param geneQueue//from   ww w.  jav  a  2 s .co  m
 */
private void load(final BlockingQueue<Gene> geneQueue) {
    final SecurityContext context = SecurityContextHolder.getContext();
    assert context != null;

    Thread loadThread = new Thread(new Runnable() {
        @Override
        public void run() {
            SecurityContextHolder.setContext(context);
            doLoad(geneQueue);
        }

    }, "Loading");
    loadThread.start();

    while (!generatorDone.get() || !converterDone.get() || !loaderDone.get()) {
        try {
            Thread.sleep(1000);
        } catch (InterruptedException e) {
            e.printStackTrace();
        }
    }
}

From source file:ubic.gemma.loader.genome.goldenpath.GoldenPathBioSequenceLoader.java

/**
 * @param inputStream/*from   ww w . j a v  a2 s.  c o  m*/
 * @return
 * @throws IOException
 */
public void load(final InputStream inputStream) {

    final BlockingQueue<BioSequence> queue = new ArrayBlockingQueue<BioSequence>(QUEUE_SIZE);
    final SecurityContext context = SecurityContextHolder.getContext();

    Thread loadThread = new Thread(new Runnable() {
        @Override
        public void run() {
            log.info("Starting loading");
            SecurityContextHolder.setContext(context);
            load(queue);
        }
    });

    loadThread.start();

    Thread parseThread = new Thread(new Runnable() {
        @Override
        public void run() {
            try {
                parser.parse(inputStream, queue);
            } catch (IOException e) {
                e.printStackTrace();
            }
            log.info("Done parsing");
            producerDone = true;
        }
    });

    parseThread.start();

    while (!producerDone || !consumerDone) {
        try {
            Thread.sleep(1000);
        } catch (InterruptedException e) {
            e.printStackTrace();
        }
    }

}

From source file:ubic.gemma.loader.genome.goldenpath.GoldenPathBioSequenceLoader.java

/**
 * Load from a database source./*  www . j  a v a2  s.  c  om*/
 * 
 * @param dumper
 */
public void load(final GoldenPathDumper dumper) {
    final BlockingQueue<BioSequence> queue = new ArrayBlockingQueue<BioSequence>(QUEUE_SIZE);

    final SecurityContext context = SecurityContextHolder.getContext();
    assert context != null;
    Thread parseThread = new Thread(new Runnable() {
        @Override
        public void run() {
            dumper.dumpTranscriptBioSequences(limit, queue);
            log.info("Done dumping");
            producerDone = true;
        }
    }, "Parser");

    parseThread.start();

    Thread loadThread = new Thread(new Runnable() {
        @Override
        public void run() {
            SecurityContextHolder.setContext(context);
            log.info("Starting loading");
            load(queue);
        }
    }, "Loader");

    loadThread.start();

    while (!producerDone || !consumerDone) {
        try {
            Thread.sleep(1000);
        } catch (InterruptedException e) {
            e.printStackTrace();
        }
    }
}

From source file:ubic.gemma.loader.protein.StringProteinInteractionLoader.java

/**
 * Thead to handle loading Gene2GeneProteinAssociation into db.
 * /*from w  ww  . j  av a  2s.  c o  m*/
 * @param geneQueue a blocking queue of genes to be loaded into the database loads genes into the database
 */
private void load(final BlockingQueue<Gene2GeneProteinAssociation> gene2GeneProteinAssociationQueue) {
    final SecurityContext context = SecurityContextHolder.getContext();
    assert context != null;

    Thread loadThread = new Thread(new Runnable() {
        @Override
        public void run() {
            SecurityContextHolder.setContext(context);
            doLoad(gene2GeneProteinAssociationQueue);
        }

    }, "Loading");
    loadThread.start();

    while (!converterDone.get() || !loaderDone.get()) {
        try {
            Thread.sleep(1000);
        } catch (InterruptedException e) {
            e.printStackTrace();
        }
    }
}