Example usage for org.jfree.data.xy XYSeriesCollection XYSeriesCollection

List of usage examples for org.jfree.data.xy XYSeriesCollection XYSeriesCollection

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Introduction

In this page you can find the example usage for org.jfree.data.xy XYSeriesCollection XYSeriesCollection.

Prototype

public XYSeriesCollection()

Source Link

Document

Constructs an empty dataset.

Usage

From source file:Charts.LineChart.java

private XYSeriesCollection createDataset() {
    final XYSeriesCollection dataset = new XYSeriesCollection();
    // Acces tableau
    for (int i = 0; i < super.values.length; i++) {
        final XYSeries serie = new XYSeries(i);
        // Acces ArrayList
        for (int j = 0; j < super.values[i].size(); j++) {

            serie.add(super.values[i].get(j).key(), super.values[i].get(j).value());
        }//from w  w  w.j a v  a2  s .c  om
        dataset.addSeries(serie);
    }
    return dataset;
}

From source file:edu.ucsd.hep.slhaviewer.view.MassGraphPanel.java

public MassGraphPanel() {
    this.setLayout(new BorderLayout());

    dataset = new XYSeriesCollection();

    JFreeChart chart = ChartFactory.createXYLineChart("Mass Spectrum", "", "mass [GeV]", dataset,
            PlotOrientation.VERTICAL, false, // no legend
            true, // add tooltips
            false // add urls
    );/*from   w  ww  .  j a v a 2s  . c  o m*/

    // get a reference to the plot for further customisation...
    XYPlot plot = (XYPlot) chart.getPlot();

    renderer = (XYLineAndShapeRenderer) plot.getRenderer();

    // change the auto tick unit selection to integer units only...
    NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis();
    rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits());

    NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis();
    domainAxis.setTickMarksVisible(false);
    domainAxis.setTickLabelsVisible(false);

    chart.setBackgroundPaint(Color.WHITE); // 'outside'
    plot.setBackgroundPaint(Color.WHITE); // 'inside'
    plot.setRangeGridlinePaint(Color.DARK_GRAY);

    this.add(new ChartPanel(chart), BorderLayout.CENTER);

}

From source file:utlis.HistogramPlot.java

public JFreeChart plotColorChart(ArrayList<int[]> histograms) {

    XYSeries xysRed = new XYSeries("Red");
    XYSeries xysGreen = new XYSeries("Grean");
    XYSeries xysBlue = new XYSeries("blue");

    for (int i = 0; i < histograms.get(0).length; i++) {

        xysRed.add(i, histograms.get(0)[i]);
        xysBlue.add(i, histograms.get(2)[i]);
        xysGreen.add(i, histograms.get(1)[i]);
    }/*ww  w . j ava 2  s .c  om*/

    XYSeriesCollection collection = new XYSeriesCollection();
    collection.addSeries(xysRed);
    collection.addSeries(xysBlue);
    collection.addSeries(xysGreen);

    JFreeChart chart = ChartFactory.createXYLineChart("Histogram", "Color Value", "Pixel count", collection);
    try {
        ChartUtilities.saveChartAsJPEG(new File("chart.jpg"), chart, 500, 300);
    } catch (IOException ex) {
        Logger.getLogger(HistogramPlot.class.getName()).log(Level.SEVERE, null, ex);
    }
    return chart;
}

From source file:gov.sandia.umf.platform.ui.jobs.Raster.java

public void parsePrnFile(File f) {
    dataset = new XYSeriesCollection();
    XYSeries series = new XYSeries("Spikes");
    dataset.addSeries(series);//from ww w.  j a  v a  2 s.c o m
    int columns = 1;

    try {
        int row = 0;
        int timeColumn = -1; // It's possible that there might not be a time column. In that case, we use raw row index;

        BufferedReader br = new BufferedReader(new FileReader(f));
        while (true) {
            String line = br.readLine();
            if (line == null)
                break; // indicates end of stream

            line = line.trim();
            if (line.length() == 0)
                continue;
            if (line.startsWith("End of"))
                continue;

            String[] parts = line.split("\t"); // TODO: does Xyce output tabs or spaces? May have to switch regexp here, depending on source.
            columns = Math.max(columns, parts.length);

            char firstCharacter = parts[0].charAt(0);
            if (firstCharacter < '0' || firstCharacter > '9') // column header
            {
                if (timeColumn >= 0)
                    continue;

                int timeMatch = 0; // goodness of match
                for (int p = 0; p < parts.length; p++) {
                    int potentialMatch = 0;
                    String columnName = parts[p];
                    if (columnName.equals("TIME"))
                        potentialMatch = 1;
                    else if (columnName.equals("$t"))
                        potentialMatch = 2;
                    if (potentialMatch > timeMatch) {
                        timeMatch = potentialMatch;
                        timeColumn = p;
                    }
                }
            } else {
                int p = timeColumn;
                double time = row;
                if (p >= 0)
                    time = Double.parseDouble(parts[timeColumn]);
                p++;
                for (; p < parts.length; p++) {
                    if (!parts[p].isEmpty() && Double.parseDouble(parts[p]) != 0)
                        series.add(time, p);
                }
                row++;
            }
        }
        br.close();
    } catch (IOException e) {
    }

    availableHeight = Math.min(20, Math.max(1, Math.round((float) availableHeight / columns)));
}

From source file:eu.choreos.chart.XYChart.java

public XYChart(String applicationTitle, String chartTitle, List<ScalabilityReport> reports) {
    super(applicationTitle);
    this.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);

    XYSeriesCollection dataset = new XYSeriesCollection();

    for (ScalabilityReport report : reports) {
        createDataset(dataset, report);/*from www  .  j a  v a 2 s.c o m*/
    }
    // based on the dataset we create the chart
    JFreeChart chart = createChart(dataset, chartTitle);
    // we put the chart into a panel
    ChartPanel chartPanel = new ChartPanel(chart);
    // default size
    chartPanel.setPreferredSize(new java.awt.Dimension(500, 270));
    // add it to our application
    setContentPane(chartPanel);

}

From source file:playground.benjamin.scenarios.zurich.analysis.charts.BkChartTemplate.java

private void createDataSet() {

    double xvalue = 0;
    double yvalue = 0;

    this.dataset = new XYSeriesCollection();
    // 1. boolean = autosort, 2. boolean = allow multiple x-values
    XYSeries series = new XYSeries("Series name", false, true);
    this.dataset.addSeries(series);
    series.add(xvalue, yvalue);/*  w w  w.  j a  va  2  s.  co m*/
}

From source file:web.diva.server.unused.PCAGenerator.java

/**
 *
 *
 * @return dataset./*from w  w w  .j  a v a 2s.  co m*/
 */
private XYDataset createDataset(TreeMap<Integer, PCAPoint> points, int[] subSelectionData, int[] selection,
        boolean zoom, DivaDataset divaDataset) {

    final XYSeriesCollection dataset = new XYSeriesCollection();
    seriesList = new TreeMap<String, XYSeries>();
    seriesList.put("#000000", new XYSeries("#000000"));
    seriesList.put("unGrouped", new XYSeries("LIGHT_GRAY"));

    for (Group g : divaDataset.getRowGroups()) {
        if (g.isActive() && !g.getName().equalsIgnoreCase("all")) {
            seriesList.put(g.getHashColor(), new XYSeries(g.getHashColor()));
        }
    }

    if (!zoom && (selection == null || selection.length == 0) && subSelectionData == null) {
        for (int key : points.keySet()) {
            PCAPoint point = points.get(key);
            if (seriesList.containsKey(point.getColor())) {
                //                    seriesList.get(divaDataset.getGeneColorArr()[point.getGeneIndex()]).add(point.getX(), point.getY());
            } else {
                seriesList.get("unGrouped").add(point.getX(), point.getY());
            }

        }

    } else if (zoom) {
        selectionSet.clear();
        for (int i : selection) {
            selectionSet.add(i);
        }

        for (int x : subSelectionData) {
            PCAPoint point = points.get(x);
            if (selectionSet.contains(point.getGeneIndex())) {
                if (seriesList.containsKey(point.getColor())) {
                    //                        seriesList.get(divaDataset.getGeneColorArr()[point.getGeneIndex()]).add(point.getX(), point.getY());

                } else {

                    seriesList.get("#000000").add(point.getX(), point.getY());
                }

            } else {
                seriesList.get("unGrouped").add(point.getX(), point.getY());
            }
        }

    } else if (subSelectionData != null) {
        selectionSet.clear();
        for (int i : selection) {
            selectionSet.add(i);
        }
        //            for (int key : subSelectionData) {
        //                PCAPoint point = points.get(key);
        //                if (selectionSet.contains(point.getGeneIndex())) {
        //                    if (seriesList.containsKey(divaDataset.getGeneColorArr()[point.getGeneIndex()])) {
        //                        seriesList.get(divaDataset.getGeneColorArr()[point.getGeneIndex()]).add(point.getX(), point.getY());
        //
        //                    } else {
        //
        //                        seriesList.get("#000000").add(point.getX(), point.getY());
        //                    }
        //
        //                } else {
        //
        //                    seriesList.get("unGrouped").add(point.getX(), point.getY());
        //                }
        //
        //            }

    } else //selection without zoom
    {
        selectionSet.clear();
        for (int i : selection) {
            selectionSet.add(i);
        }
        //            for (int key : points.keySet()) {
        //                PCAPoint point = points.get(key);
        //
        //                if (selectionSet.contains(point.getGeneIndex())) {
        //                    if (seriesList.containsKey(divaDataset.getGeneColorArr()[point.getGeneIndex()])) {
        //                        seriesList.get(divaDataset.getGeneColorArr()[point.getGeneIndex()]).add(point.getX(), point.getY());
        //
        //                    } else {
        //
        //                        seriesList.get("#000000").add(point.getX(), point.getY());
        //                    }
        //
        //                } else {
        //
        //                    seriesList.get("unGrouped").add(point.getX(), point.getY());
        //                }
        //
        //            }

    }
    for (XYSeries ser : seriesList.values()) {
        dataset.addSeries(ser);
    }

    return dataset;

}

From source file:geneticalgorithm.gui.view.VGraphic.java

public VGraphic(String title, String xLabel, String yLabel) {
    setSize(800, 600);//from  w  ww  . j av a  2  s  . co m
    setLocationRelativeTo(this);
    setTitle(title);

    addWindowListener(new WindowAdapter() {
        @Override
        public void windowClosing(WindowEvent arg0) {
            dispose();
        }
    });
    setLayout(new BorderLayout());

    average = new XYSeries("Average");
    offline = new XYSeries("Offline");
    online = new XYSeries("Online");

    dataset = new XYSeriesCollection();
    dataset.addSeries(average);
    dataset.addSeries(offline);
    dataset.addSeries(online);

    chart = ChartFactory.createXYLineChart(title, xLabel, yLabel, dataset, PlotOrientation.VERTICAL, true, true,
            false);
    add(new ChartPanel(chart), BorderLayout.CENTER);

    JPanel south = new JPanel(new MigLayout());

    lblAverage = new JLabel("");
    lblAverage.setHorizontalTextPosition(SwingConstants.LEFT);
    lblAverage.setFont(new Font("ARIAL", Font.BOLD, 26));
    JLabel lblAverageTitle = new JLabel("Average: ");
    lblAverageTitle.setFont(new Font("ARIAL", Font.BOLD, 26));
    south.add(lblAverageTitle);
    south.add(lblAverage, "wrap");

    lblOffline = new JLabel("");
    lblOffline.setHorizontalTextPosition(SwingConstants.LEFT);
    lblOffline.setFont(new Font("ARIAL", Font.BOLD, 26));
    JLabel lblOfflineTitle = new JLabel("Offline: ");
    lblOfflineTitle.setFont(new Font("ARIAL", Font.BOLD, 26));
    south.add(lblOfflineTitle);
    south.add(lblOffline, "wrap");

    lblOnline = new JLabel("");
    lblOnline.setHorizontalTextPosition(SwingConstants.LEFT);
    lblOnline.setFont(new Font("ARIAL", Font.BOLD, 26));
    JLabel lblOnlineTitle = new JLabel("Online: ");
    lblOnlineTitle.setFont(new Font("ARIAL", Font.BOLD, 26));
    south.add(lblOnlineTitle);
    south.add(lblOnline, "wrap");

    add(south, BorderLayout.SOUTH);
}

From source file:gov.nih.nci.caintegrator.ui.graphing.chart.plot.KaplanMeierPlot.java

public KaplanMeierPlot(Collection<KaplanMeierPlotPointSeriesSet> kmPlotSets) {
    kaplanMeierPlotSets = kmPlotSets;//from www .  ja  v  a 2 s .  c  o m
    finalDataCollection = new XYSeriesCollection();
    /**
     * Repackage all the datasets to go into the XYSeriesCollection
     */
    for (KaplanMeierPlotPointSeriesSet dataSet : kaplanMeierPlotSets) {
        finalDataCollection.addSeries(dataSet.getCensorPlotPoints());
        finalDataCollection.addSeries(dataSet.getProbabilityPlotPoints());
    }
    createChart(finalDataCollection);
}

From source file:org.gwaspi.reports.PlinkReportLoader.java

public static CombinedRangeXYPlot loadAssocUnadjLogPvsPos(File plinkReport, Set<String> redMarkersHS)
        throws IOException {

    XYSeriesCollection chrData = new XYSeriesCollection();

    NumberAxis sharedAxis = new NumberAxis("-log?(P)");

    CombinedRangeXYPlot combinedPlot = new CombinedRangeXYPlot(sharedAxis);
    combinedPlot.setGap(0);/*  w  w  w  . j ava 2  s .  c  o m*/

    XYSeries series1 = null;
    XYSeries series2 = null;

    FileReader inputFileReader = null;
    BufferedReader inputBufferReader = null;
    String tempChr = null;
    try {
        inputFileReader = new FileReader(plinkReport);
        inputBufferReader = new BufferedReader(inputFileReader);

        // Getting data from file and subdividing to series all points by chromosome
        String l;
        tempChr = "";
        String header = inputBufferReader.readLine();
        int count = 0;
        while ((l = inputBufferReader.readLine()) != null) {

            if (count % 10000 == 0) {
                log.info("loadAssocUnadjLogPvsPos -> reader count: {}", count);
            }
            count++;

            l = l.trim().replaceAll("\\s+", ",");
            String[] cVals = l.split(",");

            String markerId = cVals[1];
            int position = Integer.parseInt(cVals[2]);
            String s_pVal = cVals[8];

            if (!s_pVal.equals("NA")) {
                double logPValue = Math.abs(Math.log(Double.parseDouble(s_pVal)) / Math.log(10));

                if (cVals[0].toString().equals(tempChr)) {
                    if (redMarkersHS.contains(markerId)) {
                        series2.add(position, logPValue);
                    } else {
                        series1.add(position, logPValue);
                    }
                    labeler.put(tempChr + "_" + position, markerId);
                } else {
                    if (!tempChr.isEmpty()) { // SKIP FIRST TIME (NO DATA YET!)
                        chrData.addSeries(series1);
                        chrData.addSeries(series2);
                        appendToCombinedRangePlot(combinedPlot, tempChr, chrData);
                    }
                    tempChr = cVals[0];
                    series1 = new XYSeries("Imputed");
                    series2 = new XYSeries("Observed");
                    labeler.put(tempChr + "_" + position, markerId);

                    if (redMarkersHS.contains(markerId)) {
                        series2.add(position, logPValue);
                    } else {
                        series1.add(position, logPValue);
                    }
                }
            }
        }
    } finally {
        if (inputBufferReader != null) {
            inputBufferReader.close();
        } else if (inputFileReader != null) {
            inputFileReader.close();
        }
    }

    chrData.addSeries(series1);
    chrData.addSeries(series2);
    appendToCombinedRangePlot(combinedPlot, tempChr, chrData); // ADD LAST CHR TO PLOT

    return combinedPlot;
}