Example usage for org.jfree.data.xy XYSeriesCollection getSeries

List of usage examples for org.jfree.data.xy XYSeriesCollection getSeries

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Introduction

In this page you can find the example usage for org.jfree.data.xy XYSeriesCollection getSeries.

Prototype

public List getSeries()

Source Link

Document

Returns a list of all the series in the collection.

Usage

From source file:org.fhcrc.cpl.viewer.mrm.Utils.java

public static double getWeightedAverageDaughtersTime(XYSeriesCollection daughterSet) {
    double retVal = 0.0;
    double yTot = 0.0;
    double xWeight = 0.0;
    for (Object xyso : daughterSet.getSeries()) {
        XYSeries xys = (XYSeries) xyso;//from   w  ww  . j  a va 2 s.  co  m
        for (Object xydio : xys.getItems()) {
            XYDataItem xydi = (XYDataItem) xydio;
            xWeight += (xydi.getX().doubleValue() * xydi.getY().doubleValue());
            yTot += xydi.getY().doubleValue();
        }
    }
    if (yTot > 0)
        retVal = xWeight / yTot;
    return retVal;
}

From source file:edu.fullerton.viewerplugin.PluginSupport.java

public static void getRangeLimits(XYSeriesCollection mtds, Double[] rng, int skip, float xmin, float xmax) {
    Double minx, miny, maxx, maxy;

    minx = miny = Double.MAX_VALUE;

    maxx = maxy = -Double.MAX_VALUE;
    for (Iterator it = mtds.getSeries().iterator(); it.hasNext();) {

        XYSeries ds = (XYSeries) it.next();
        for (int item = skip; item < ds.getItemCount() - skip; item++) {
            double x = ds.getX(item).doubleValue();
            double y = ds.getY(item).doubleValue();

            if (x >= xmin && x <= xmax) {
                minx = Math.min(minx, x);
                miny = Math.min(miny, y);
                maxx = Math.max(maxx, x);
                maxy = Math.max(maxy, y);
            }/*  w  w w.  j  a v  a 2 s  . co  m*/
        }
    }
    rng[0] = minx;
    rng[1] = miny;
    rng[2] = maxx;
    rng[3] = maxy;
}

From source file:sim.util.media.chart.TimeSeriesChartGenerator.java

public void moveSeries(int index, boolean up) {
    super.moveSeries(index, up);

    if ((index > 0 && up) || (index < getSeriesCount() - 1 && !up)) // it's not the first or the last given the move
    {//w w w.  j av  a 2  s  .com
        XYSeriesCollection xysc = (XYSeriesCollection) getSeriesDataset();
        // this requires removing everything from the dataset and resinserting, duh
        ArrayList items = new ArrayList(xysc.getSeries());
        xysc.removeAllSeries();

        int delta = up ? -1 : 1;
        // now rearrange
        items.add(index + delta, items.remove(index));

        // rebuild the dataset
        for (int i = 0; i < items.size(); i++)
            xysc.addSeries(((XYSeries) (items.get(i))));
    }
}

From source file:edu.gmu.cs.sim.util.media.chart.TimeSeriesChartGenerator.java

public void moveSeries(int index, boolean up) {
    super.moveSeries(index, up);

    if ((index > 0 && up) || (index < getSeriesCount() - 1 && !up)) // it's not the first or the last given the move
    {//from w w w  .j a v  a2s .co  m
        XYSeriesCollection xysc = (XYSeriesCollection) getSeriesDataset();
        // this requires removing everything from the dataset and resinserting, duh
        ArrayList items = new ArrayList(xysc.getSeries());
        xysc.removeAllSeries();

        int delta = up ? -1 : 1;
        // now rearrange
        items.add(index + delta, items.remove(index));

        // rebuild the dataset
        for (int i = 0; i < items.size(); i++) {
            xysc.addSeries(((XYSeries) (items.get(i))));
        }
    }
}

From source file:com.compomics.cell_coord.gui.controller.summary.VisualizeTracksController.java

/**
 * Given the number of columns to use, set the charts with the
 * xySeriesCollections generated./*  w  w w .jav a 2s  .c om*/
 *
 * @param nCols
 */
private void setChartsWithCollections(int nCols) {
    List<Sample> samples = loadTracksController.getSamples();
    int nPlots = xYSeriesCollections.size();
    for (int i = 0; i < nPlots; i++) {
        XYSeriesCollection collection = xYSeriesCollections.get(i);
        int numberTracks = collection.getSeries().size();
        String title = numberTracks + " tracks" + " - " + samples.get(i).getName();
        // create a chart for each plate condition
        JFreeChart coordinatesChart = ChartFactory.createXYLineChart(title, "x (m)", "y (m)", collection,
                PlotOrientation.VERTICAL, false, true, false);
        // and a new chart panel as well
        ChartPanel coordinatesChartPanel = new ChartPanel(null);
        coordinatesChartPanel.setOpaque(false);
        // compute the constraints
        GridBagConstraints specialGBC = getGridBagConstraints(nPlots, i, nCols);
        visualizeTracksPanel.getTracksGraphicsParentPanel().add(coordinatesChartPanel, specialGBC);
        if (visualizeTracksPanel.getScaleAxesRadioButton().isSelected()) {
            scaleAxes(coordinatesChart, visualizeTracksPanel.getRawCoordRadioButton().isSelected());
        }
        coordinatesChartPanel.setChart(coordinatesChart);
        // add the chart panels to the list
        tracksChartPanels.add(coordinatesChartPanel);
        visualizeTracksPanel.getTracksGraphicsParentPanel().revalidate();
        visualizeTracksPanel.getTracksGraphicsParentPanel().repaint();
    }
}

From source file:be.ugent.maf.cellmissy.gui.controller.analysis.singlecell.GlobalViewConditionController.java

/**
 * Iterate through the current track data holders and get the endpoints of
 * the correspondent tracks.//from   w ww .  j  a  v a  2 s  . c om
 *
 * @return: a List of Integers, each Integer being the endpoint for a track.
 */
private List<Integer> getEndPoints(XYSeriesCollection xYSeriesCollection) {
    List<Integer> endPoints = new ArrayList<>();
    for (int i = 0; i < xYSeriesCollection.getSeries().size(); i++) {
        endPoints.add(xYSeriesCollection.getSeries(i).getItemCount());
    }
    return endPoints;
}

From source file:be.ugent.maf.cellmissy.gui.controller.analysis.singlecell.GlobalViewConditionController.java

/**
 * Set all the charts with the generated XYSeriesCollections.
 *
 * @param nCols//from  ww w  .j a v  a2 s.  c om
 */
private void setChartsWithCollections(int nCols) {
    // plot logic
    boolean plotLines = plotSettingsMenuBar.getPlotLinesCheckBoxMenuItem().isSelected();
    boolean plotPoints = plotSettingsMenuBar.getPlotPointsCheckBoxMenuItem().isSelected();
    boolean showEndPoints = plotSettingsMenuBar.getShowEndPointsCheckBoxMenuItem().isSelected();
    Float lineWidth = plotSettingsMenuBar.getSelectedLineWidth();
    boolean useCellMissyColor = plotSettingsMenuBar.getUseCellMissyColors().isSelected();
    int nPlots = xYSeriesCollections.size();
    int length = GuiUtils.getAvailableColors().length;
    for (int i = 0; i < nPlots; i++) {
        XYSeriesCollection collection = xYSeriesCollections.get(i);
        int numberTracks = collection.getSeries().size();
        SingleCellConditionDataHolder conditionDataHolder = trackCoordinatesController
                .getConditionDataHolder(trackCoordinatesController.getCurrentCondition());
        String title = numberTracks + " tracks" + " - "
                + conditionDataHolder.getSingleCellWellDataHolders().get(i).getWell();
        // create a chart for each plate condition
        JFreeChart coordinatesChart = ChartFactory.createXYLineChart(title, "x (m)", "y (m)", collection,
                PlotOrientation.VERTICAL, false, true, false);
        // and a new chart panel as well
        ChartPanel coordinatesChartPanel = new ChartPanel(null);
        coordinatesChartPanel.setOpaque(false);

        // compute the constraints
        GridBagConstraints tempBagConstraints = GuiUtils.getTempBagConstraints(nPlots, i, nCols);
        trackCoordinatesController.getTrackCoordinatesPanel().getGlobalViewConditionParentPanel()
                .add(coordinatesChartPanel, tempBagConstraints);
        // see if exes need to be scaled
        if (plotOptionsPanel.getScaleAxesRadioButton().isSelected()) {
            trackCoordinatesController.scaleAxesToExperiment(coordinatesChart,
                    plotOptionsPanel.getUnshiftedCoordinatesRadioButton().isSelected());
        }
        JFreeChartUtils.setupTrackChart(coordinatesChart);
        TrackXYLineAndShapeRenderer trackXYLineAndShapeRenderer = new TrackXYLineAndShapeRenderer(plotLines,
                plotPoints, showEndPoints, getEndPoints(collection), -1, lineWidth, useCellMissyColor);
        trackXYLineAndShapeRenderer.setChosenColor(GuiUtils.getAvailableColors()[i % length]);
        coordinatesChart.getXYPlot().setRenderer(trackXYLineAndShapeRenderer);
        coordinatesChartPanel.setChart(coordinatesChart);

        // add the chart panels to the list
        coordinatesChartPanels.add(coordinatesChartPanel);
        trackCoordinatesController.getTrackCoordinatesPanel().getGlobalViewConditionParentPanel().revalidate();
        trackCoordinatesController.getTrackCoordinatesPanel().getGlobalViewConditionParentPanel().repaint();
    }
}

From source file:be.ugent.maf.cellmissy.gui.controller.analysis.singlecell.GlobalViewExperimentController.java

/**
 * Set all the charts with the generated XYSeriesCollections.
 *
 * @param nCols/*from  w  w w .  ja v a2  s .com*/
 */
private void setChartsWithCollections(int nCols) {
    // plot logic
    boolean plotLines = plotSettingsMenuBar.getPlotLinesCheckBoxMenuItem().isSelected();
    boolean plotPoints = plotSettingsMenuBar.getPlotPointsCheckBoxMenuItem().isSelected();
    boolean showEndPoints = plotSettingsMenuBar.getShowEndPointsCheckBoxMenuItem().isSelected();
    Float lineWidth = plotSettingsMenuBar.getSelectedLineWidth();
    boolean useCellMissyColor = plotSettingsMenuBar.getUseCellMissyColors().isSelected();
    int nPlots = xYSeriesCollections.size();
    int length = GuiUtils.getAvailableColors().length;
    List<PlateCondition> plateConditionList = trackCoordinatesController.getPlateConditionList();
    for (int i = 0; i < nPlots; i++) {
        XYSeriesCollection collection = xYSeriesCollections.get(i);
        int numberTracks = collection.getSeries().size();
        String title = numberTracks + " tracks" + " - " + plateConditionList.get(i);
        // create a chart for each plate condition
        JFreeChart coordinatesChart = ChartFactory.createXYLineChart(title, "x (m)", "y (m)", collection,
                PlotOrientation.VERTICAL, false, true, false);
        // and a new chart panel as well
        ChartPanel coordinatesChartPanel = new ChartPanel(null);
        coordinatesChartPanel.setOpaque(false);

        // compute the constraints
        GridBagConstraints tempBagConstraints = GuiUtils.getTempBagConstraints(nPlots, i, nCols);
        trackCoordinatesController.getTrackCoordinatesPanel().getGlobalViewExpParentPanel()
                .add(coordinatesChartPanel, tempBagConstraints);
        // see if exes need to be scaled
        if (plotOptionsPanel.getScaleAxesRadioButton().isSelected()) {
            trackCoordinatesController.scaleAxesToExperiment(coordinatesChart,
                    plotOptionsPanel.getUnshiftedCoordinatesRadioButton().isSelected());
        }
        JFreeChartUtils.setupTrackChart(coordinatesChart);
        TrackXYLineAndShapeRenderer trackXYLineAndShapeRenderer = new TrackXYLineAndShapeRenderer(plotLines,
                plotPoints, showEndPoints, getEndPoints(collection), -1, lineWidth, useCellMissyColor);
        trackXYLineAndShapeRenderer.setChosenColor(GuiUtils.getAvailableColors()[i % length]);
        coordinatesChart.getXYPlot().setRenderer(trackXYLineAndShapeRenderer);
        coordinatesChartPanel.setChart(coordinatesChart);

        // add the chart panels to the list
        coordinatesChartPanels.add(coordinatesChartPanel);
        trackCoordinatesController.getTrackCoordinatesPanel().getGlobalViewExpParentPanel().revalidate();
        trackCoordinatesController.getTrackCoordinatesPanel().getGlobalViewExpParentPanel().repaint();
    }
}

From source file:org.lmn.fc.frameworks.starbase.plugins.observatory.ui.tabs.charts.GpsScatterPlotUIComponent.java

/***********************************************************************************************
 * Update the existing Chart referenced by the DAO, by applying the specified datasets.
 * No Channel selection or DatasetDomain adjustment is allowed,
 * so just re-apply the original dataset.
 * This Chart does not use secondary datasets (yet).
 *
 * @param dao//from   ww w. j  a  v  a  2s  . c o  m
 * @param datasettype
 * @param primarydataset
 * @param secondarydatasets
 * @param displaylimit
 * @param domainstartpoint
 * @param domainendpoint
 * @param channelselector
 * @param debug
 */

public void updateChartForSelection(final ObservatoryInstrumentDAOInterface dao, final DatasetType datasettype,
        final XYDataset primarydataset, final List<XYDataset> secondarydatasets, final int displaylimit,
        final int domainstartpoint, final int domainendpoint,
        final ChannelSelectorUIComponentInterface channelselector, final boolean debug) {
    final String SOURCE = "GpsScatterPlotUIComponent.updateChartForSelection() ";

    LOGGER.debug(debug, SOURCE);

    if ((dao != null) && (dao.getChartUI() != null) && (dao.getChartUI().getChartPanel() != null)
            && (dao.getChartUI().getChartPanel().getChart() != null)
            && (dao.getChartUI().getChartPanel().getChart().getXYPlot() != null) && (datasettype != null)
            && (primarydataset != null)) {
        // Confirm the DatasetType
        if ((datasettype.getName().equals(DatasetType.XY.getName()))
                && (primarydataset instanceof XYSeriesCollection)) {
            final XYSeriesCollection collectionPrimary;

            // There should be a collection of <channelcount> XYSeries in the Primary Dataset
            collectionPrimary = (XYSeriesCollection) primarydataset;

            if ((collectionPrimary.getSeriesCount() > 0) && (collectionPrimary.getSeries() != null)) {
                LOGGER.debug(debug, SOURCE + "Update the data shown on existing Chart");

                // No Channel selection or DatasetDomain adjustment is allowed,
                // so just re-apply the original dataset
                // This Chart does not use secondary datasets (yet)
                dao.getChartUI().getChartPanel().getChart().getXYPlot().setDataset(INDEX_DATA,
                        collectionPrimary);
                updateCentroidCrosshairs();
            } else {
                LOGGER.error(SOURCE + " The XYSeriesCollection does not have any XYSeries");
            }
        } else {
            LOGGER.error(SOURCE + " The Dataset is of an invalid type");
        }
    } else {
        LOGGER.debug(debug, SOURCE + " Unable to change the Chart - invalid parameters");
    }
}

From source file:userinterface.graph.PrismErrorRenderer.java

/**
 * This method is needed for displaying the graph in the correct range (not too zoomed out or in)
 * @param dataset the dataset which needs to be plotted
 * @author Muhammad Omer Saeed//from w  w  w  .  j  a  v  a 2s  . c  o  m
 */

public Range findRangeBounds(XYDataset dataset) {

    if (dataset != null) {

        XYSeriesCollection collection = (XYSeriesCollection) dataset;
        List<XYSeries> series = collection.getSeries();
        double max = Double.MIN_VALUE, min = Double.MAX_VALUE;

        for (XYSeries s : series) {
            for (int i = 0; i < s.getItemCount(); i++) {
                PrismXYDataItem item = (PrismXYDataItem) s.getDataItem(i);

                if ((item.getYValue() - item.getError()) < min) {
                    min = (item.getYValue() - item.getError());
                }

                if ((item.getYValue() + item.getError()) > max) {
                    max = (item.getYValue() + item.getError());
                }
            }
        }

        if (max == Double.MIN_VALUE && min == Double.MAX_VALUE) {
            return null;
        } else
            return new Range(min, max);
    } else {
        return null;
    }
}