List of usage examples for org.jfree.chart.plot XYPlot getRangeAxis
public ValueAxis getRangeAxis()
From source file:de.hs.mannheim.modUro.diagram.JCellcycletimeDiagram.java
protected JFreeChart createChart(XYDataset dataset, List<String> celltypes) { String title = "Cell cycle times"; JFreeChart xyLineChart = ChartFactory.createXYLineChart(title, // title "t", // x-axis label "T", // y-axis label dataset);//from ww w . jav a 2 s . com String fontName = "Palatino"; xyLineChart.getTitle().setFont(new Font(fontName, Font.BOLD, 18)); XYPlot plot = (XYPlot) xyLineChart.getPlot(); plot.setDomainPannable(true); plot.setRangePannable(true); plot.setDomainCrosshairVisible(true); plot.setRangeCrosshairVisible(true); plot.getDomainAxis().setLowerMargin(0.0); plot.getDomainAxis().setLabelFont(new Font(fontName, Font.BOLD, 14)); plot.getDomainAxis().setTickLabelFont(new Font(fontName, Font.PLAIN, 12)); plot.getRangeAxis().setLowerMargin(0.0); // plot.getRangeAxis().setRange(0.0, 1.01); plot.getRangeAxis().setLabelFont(new Font(fontName, Font.BOLD, 14)); plot.getRangeAxis().setTickLabelFont(new Font(fontName, Font.PLAIN, 12)); xyLineChart.getLegend().setItemFont(new Font(fontName, Font.PLAIN, 14)); xyLineChart.getLegend().setFrame(BlockBorder.NONE); xyLineChart.getLegend().setHorizontalAlignment(HorizontalAlignment.CENTER); XYItemRenderer r = plot.getRenderer(); // set the default stroke for all series int i = 0; for (String celltype : celltypes) { r.setSeriesPaint(i, CellTypeColor.getColor(celltype)); i++; } return xyLineChart; }
From source file:net.sf.maltcms.chromaui.foldChangeViewer.tasks.FoldChangeViewLoaderWorker.java
@Override public void run() { ProgressHandle handle = ProgressHandleFactory.createHandle("Creating fold change plot"); try {// w ww . j a v a 2s .c om handle.setDisplayName("Loading fold change elements");//+new File(this.files.getResourceLocation()).getName()); handle.start(5); handle.progress("Reading settings", 1); RTUnit rtAxisUnit = RTUnit.valueOf(sp.getProperty("rtAxisUnit", "SECONDS")); handle.progress("Retrieving data", 2); XYShapeRenderer renderer = new XYShapeRenderer() { @Override protected Paint getPaint(XYDataset dataset, int series, int item) { double x = dataset.getXValue(series, item); double y = dataset.getYValue(series, item); if (Math.abs(x) < 1.0) { Paint p = super.getPaint(dataset, series, item); if (p instanceof Color) { Color color = (Color) p; float[] values = Color.RGBtoHSB(color.getRed(), color.getGreen(), color.getBlue(), new float[3]); Color hsb = new Color( Color.HSBtoRGB(values[0], (float) Math.max(0.1, values[1] - 0.9), values[2])); return new Color(hsb.getRed(), hsb.getGreen(), hsb.getBlue(), 64); } } return super.getPaint(dataset, series, item); } }; renderer.setAutoPopulateSeriesFillPaint(true); renderer.setAutoPopulateSeriesOutlinePaint(true); renderer.setBaseCreateEntities(true); handle.progress("Building plot", 3); XYPlot plot = new XYPlot(dataset, new NumberAxis("log2 fold change"), new NumberAxis("-log10 p-value"), renderer); BasicStroke dashed = new BasicStroke(1.0f, BasicStroke.CAP_BUTT, BasicStroke.JOIN_MITER, 5.0f, new float[] { 5.0f }, 0.0f); ValueMarker marker = new ValueMarker(-Math.log10(0.05), Color.RED, dashed); marker.setLabel("p-value=0.05"); marker.setLabelAnchor(RectangleAnchor.BOTTOM_LEFT); marker.setLabelOffset(new RectangleInsets(UnitType.ABSOLUTE, 0, 50, 10, 0)); marker.setLabelOffsetType(LengthAdjustmentType.EXPAND); marker.setLabelPaint(Color.LIGHT_GRAY); plot.addRangeMarker(marker); Font font1 = new Font("SansSerif", Font.PLAIN, 12); SelectionAwareXYTooltipGenerator tooltipGenerator = cvtc.getLookup() .lookup(SelectionAwareXYTooltipGenerator.class); if (tooltipGenerator == null) { tooltipGenerator = new SelectionAwareXYTooltipGenerator(tooltipGenerator) { @Override public String createSelectionAwareTooltip(XYDataset xyd, int i, int i1) { FoldChangeDataset dataset = (FoldChangeDataset) xyd; FoldChangeElement fce = dataset.getNamedElementProvider().get(i).get(i1); StringBuilder sb = new StringBuilder(); sb.append("<html>"); sb.append(fce.getPeakGroup().getMajorityDisplayName()); sb.append("<br>"); sb.append("log2 fold change="); sb.append(fce.getFoldChange()); sb.append("<br>"); sb.append("p-value="); sb.append(Math.pow(10, -fce.getPvalue())); sb.append("</html>"); return sb.toString(); } }; } tooltipGenerator.setXYToolTipGenerator(new XYToolTipGenerator() { @Override public String generateToolTip(XYDataset xyd, int i, int i1) { Comparable comp = xyd.getSeriesKey(i); double x = xyd.getXValue(i, i1); double y = xyd.getYValue(i, i1); StringBuilder sb = new StringBuilder(); sb.append("<html>"); sb.append(comp); sb.append("<br>"); sb.append("log2 fold change="); sb.append(x); sb.append("<br>"); sb.append("p-value="); sb.append(sb.append(Math.pow(10, -y))); sb.append("</html>"); return sb.toString(); } }); plot.getRenderer().setBaseToolTipGenerator(tooltipGenerator); handle.progress("Configuring plot", 4); configurePlot(plot, rtAxisUnit); final FoldChangeViewPanel cmhp = cvtc.getLookup().lookup(FoldChangeViewPanel.class); Range domainRange = null; Range valueRange = null; if (cmhp != null) { XYPlot xyplot = cmhp.getPlot(); if (xyplot != null) { ValueAxis domain = xyplot.getDomainAxis(); domainRange = domain.getRange(); ValueAxis range = xyplot.getRangeAxis(); valueRange = range.getRange(); } } if (domainRange != null) { plot.getDomainAxis().setRange(domainRange); } if (valueRange != null) { Logger.getLogger(getClass().getName()).info("Setting previous value range!"); } handle.progress("Adding plot to panel", 5); final XYPlot targetPlot = plot; SwingUtilities.invokeLater(new Runnable() { @Override public void run() { final FoldChangeViewPanel cmhp = cvtc.getLookup().lookup(FoldChangeViewPanel.class); cmhp.setPlot(targetPlot); cvtc.requestActive(); } }); } finally { handle.finish(); } }
From source file:de.hs.mannheim.modUro.reader.JCellCountDiagram.java
protected JFreeChart createChart(XYDataset dataset, List<String> cellTypes) { String title = "Cell count"; JFreeChart xyLineChart = ChartFactory.createXYLineChart(title, // title "t", // x-axis label "n", // y-axis label dataset);/*w w w. j a va 2 s . c o m*/ String fontName = "Palatino"; xyLineChart.getTitle().setFont(new Font(fontName, Font.BOLD, 18)); XYPlot plot = (XYPlot) xyLineChart.getPlot(); plot.setDomainPannable(true); plot.setRangePannable(true); plot.setDomainCrosshairVisible(true); plot.setRangeCrosshairVisible(true); plot.getDomainAxis().setLowerMargin(0.0); plot.getDomainAxis().setLabelFont(new Font(fontName, Font.BOLD, 14)); plot.getDomainAxis().setTickLabelFont(new Font(fontName, Font.PLAIN, 12)); plot.getRangeAxis().setLowerMargin(0.0); // plot.getRangeAxis().setRange(0.0, 1.01); plot.getRangeAxis().setLabelFont(new Font(fontName, Font.BOLD, 14)); plot.getRangeAxis().setTickLabelFont(new Font(fontName, Font.PLAIN, 12)); xyLineChart.getLegend().setItemFont(new Font(fontName, Font.PLAIN, 14)); xyLineChart.getLegend().setFrame(BlockBorder.NONE); xyLineChart.getLegend().setHorizontalAlignment(HorizontalAlignment.CENTER); XYItemRenderer r = plot.getRenderer(); // set the default stroke for all series int i = 0; for (String celltype : cellTypes) { r.setSeriesPaint(i, CellTypeColor.getColor(celltype)); i++; } r.setSeriesPaint(i, Color.BLACK); return xyLineChart; }
From source file:org.interpss.chart.dstab.SimpleOneStateChart.java
/** * create the chart based on the data attributes * /*from w ww .j av a 2s. c o m*/ */ public void createChart() { final JFreeChart chart = ChartFactory.createXYLineChart(plotTitle, xLabel, yLabel, createXYDataSet(xDataAry, yDataAry, yDataLabel), PlotOrientation.VERTICAL, true, false, false); final XYPlot plot = (XYPlot) chart.getPlot(); final StandardXYItemRenderer renderer = new StandardXYItemRenderer(); renderer.setToolTipGenerator(new StandardXYToolTipGenerator()); plot.setRenderer(renderer); //NumberAxis axis_x = (NumberAxis) plot.getDomainAxis(); //axis_x.setRangeAboutValue(12.0, 24.0); final NumberAxis axisLeft = (NumberAxis) plot.getRangeAxis(); axisLeft.setAutoRangeIncludesZero(false); axisLeft.setAutoRangeMinimumSize(autoRangeMinimumSize); final XYItemRenderer v_renderer = plot.getRenderer(0); v_renderer.setSeriesPaint(0, yColor); final ChartPanel chartPanel = new ChartPanel(chart); chartPanel.setPreferredSize(new java.awt.Dimension(Chart_Width, Chart_Height)); setContentPane(chartPanel); }
From source file:test.integ.be.fedict.performance.util.PerformanceResultDialog.java
private JFreeChart getPerformanceChart(int intervalSize, List<PerformanceData> performance, int expectedRevoked) { TimeSeries series = new TimeSeries("Success"); TimeSeries revokedSeries = new TimeSeries("Revoked"); TimeSeries failureSeries = new TimeSeries("Failures"); performance.remove(performance.size() - 1); if (performance.isEmpty()) { JOptionPane.showMessageDialog(null, "test did not run long enough"); return null; }/* w w w . j ava2s . c o m*/ JFreeChart chart; int totalCount = 0; int totalRevoked = 0; int totalFailures = 0; for (PerformanceData performanceEntry : performance) { series.add(new Second(performanceEntry.getDate()), performanceEntry.getCount()); totalCount += performanceEntry.getCount(); revokedSeries.add(new Second(performanceEntry.getDate()), performanceEntry.getRevoked()); totalRevoked += performanceEntry.getRevoked(); failureSeries.add(new Second(performanceEntry.getDate()), performanceEntry.getFailures()); totalFailures += performanceEntry.getFailures(); } TimeSeriesCollection dataset = new TimeSeriesCollection(); dataset.addSeries(series); dataset.addSeries(revokedSeries); dataset.addSeries(failureSeries); chart = ChartFactory.createTimeSeriesChart("eID Trust Service Performance History", "Time (interval size " + intervalSize + " msec)", "Number of XKMS requests", dataset, true, false, false); chart.addSubtitle(new TextTitle(performance.get(0).getDate().toString() + " - " + performance.get(performance.size() - 1).getDate().toString())); TextTitle info = new TextTitle("Total number of successful requests: " + totalCount); info.setTextAlignment(HorizontalAlignment.LEFT); info.setPosition(RectangleEdge.BOTTOM); chart.addSubtitle(info); TextTitle info2 = new TextTitle( "Total number of revoked: " + totalRevoked + " expected=" + expectedRevoked); info2.setPosition(RectangleEdge.BOTTOM); info2.setTextAlignment(HorizontalAlignment.LEFT); chart.addSubtitle(info2); TextTitle info3 = new TextTitle("Total number of failures: " + totalFailures); info3.setPosition(RectangleEdge.BOTTOM); info3.setTextAlignment(HorizontalAlignment.LEFT); chart.addSubtitle(info3); chart.setBackgroundPaint(Color.WHITE); XYPlot plot = chart.getXYPlot(); plot.setBackgroundPaint(Color.WHITE); DateAxis axis = (DateAxis) plot.getDomainAxis(); axis.setDateFormatOverride(new SimpleDateFormat("HH:mm:ss")); ValueAxis valueAxis = plot.getRangeAxis(); valueAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(); plot.setRangeGridlinePaint(Color.black); plot.setDomainGridlinePaint(Color.black); plot.setRenderer(renderer); return chart; }
From source file:net.sf.maltcms.chromaui.chromatogram1Dviewer.tasks.ChromatogramViewLoaderWorker.java
@Override public void run() { ProgressHandle handle = ProgressHandleFactory.createHandle("Creating 1D Chromatogram plot"); try {/*www . j a v a 2 s.co m*/ handle.setDisplayName("Loading " + files.size() + " chromatograms");//+new File(this.files.getResourceLocation()).getName()); handle.start(5); Logger.getLogger(getClass().getName()).info("Running Chromatogram open action!"); Logger.getLogger(getClass().getName()).info("Storing current viewport!"); Logger.getLogger(getClass().getName()).info("Retrieving settings from panel"); handle.progress("Reading settings", 1); double massResolution = Double.parseDouble(sp.getProperty("massResolution", "1.0")); double[] masses = null; String[] massesStrings = (sp.getProperty("selectedMasses", "73.0 147.0")).trim().split(" "); masses = new double[massesStrings.length]; for (int i = 0; i < massesStrings.length; i++) { masses[i] = Double.parseDouble(massesStrings[i]); } String plotMode = sp.getProperty("plotMode", "TIC"); String plotType = sp.getProperty("plotType", "SIDE"); RTUnit rtAxisUnit = RTUnit.valueOf(sp.getProperty("rtAxisUnit", "SECONDS")); // boolean autoRange = Boolean.parseBoolean(sp.getProperty("autoRange","true")); // if(autoRange) { // // } // // double minRT = Double.parseDouble(sp.getProperty("timeRangeMin")); // double maxRT = Double.parseDouble(sp.getProperty("timeRangeMax")); // MinMax mm = MAMath.getMinMax(file.getScanAcquisitionTime()); // handle.progress("Retrieving peaks", 2); Chromatogram1DChartProvider c1p = new Chromatogram1DChartProvider(); c1p.setRenderer(settingsPanel.getRenderer()); // c1p.setPeakData(filePeakMap); // c1p.setScanRange(file.getIndexFor(Math.max(mm.min, minRT)),file.getIndexFor(Math.min(mm.max, maxRT))); XYPlot plot = null; Logger.getLogger(getClass().getName()).log(Level.INFO, "Plot mode is {0}", plotMode); SelectionAwareXYTooltipGenerator tooltipGenerator = cvtc.getLookup() .lookup(SelectionAwareXYTooltipGenerator.class); if (tooltipGenerator == null) { tooltipGenerator = new SelectionAwareXYTooltipGenerator(tooltipGenerator) { @Override public String createSelectionAwareTooltip(XYDataset xyd, int i, int i1) { return null; } }; } handle.progress("Building plot", 3); switch (plotMode) { case "TIC": Logger.getLogger(getClass().getName()).info("Loading TIC"); switch (plotType) { case "SIDE": plot = c1p.provide1DPlot(dataset, tooltipGenerator); break; case "TOP": plot = c1p.provide1DCoPlot(new TopViewDataset<>(dataset), tooltipGenerator, dataset.getMinY(), dataset.getMaxY(), true); break; } break; case "EIC-SUM": { Logger.getLogger(getClass().getName()).info("Loading EIC-SUM"); EIC1DDataset ds = new EIC1DDataset(dataset.getNamedElementProvider(), masses, massResolution, EIC1DDataset.TYPE.SUM, new ProxyLookup(dataset.getLookup())); switch (plotType) { case "SIDE": plot = c1p.provide1DEICSUMPlot(ds, tooltipGenerator, masses, massResolution, true); break; case "TOP": plot = c1p.provide1DCoPlot(new TopViewDataset<>(ds), tooltipGenerator, ds.getMinY(), ds.getMaxY(), true); break; } break; } case "EIC-COPLOT": { Logger.getLogger(getClass().getName()).info("Loading EIC-COPLOT"); EIC1DDataset ds = new EIC1DDataset(dataset.getNamedElementProvider(), masses, massResolution, EIC1DDataset.TYPE.CO, new ProxyLookup(dataset.getLookup())); switch (plotType) { case "SIDE": plot = c1p.provide1DEICCOPlot(ds, tooltipGenerator, masses, massResolution, true); break; case "TOP": plot = c1p.provide1DCoPlot(new TopViewDataset<>(ds), tooltipGenerator, ds.getMinY(), ds.getMaxY(), true); break; } break; } } handle.progress("Configuring plot", 4); configurePlot(plot, rtAxisUnit); final Chromatogram1DViewPanel cmhp = cvtc.getLookup().lookup(Chromatogram1DViewPanel.class); Range domainRange = null; Range valueRange = null; if (cmhp != null) { XYPlot xyplot = cmhp.getPlot(); if (xyplot != null) { ValueAxis domain = xyplot.getDomainAxis(); domainRange = domain.getRange(); ValueAxis range = xyplot.getRangeAxis(); valueRange = range.getRange(); } } if (domainRange != null) { Logger.getLogger(getClass().getName()).info("Setting previous domain range!"); plot.getDomainAxis().setRange(domainRange); } if (valueRange != null) { Logger.getLogger(getClass().getName()).info("Setting previous value range!"); plot.getRangeAxis().setRange(valueRange); } handle.progress("Adding plot to panel", 5); final XYPlot targetPlot = plot; SwingUtilities.invokeLater(new Runnable() { @Override public void run() { final Chromatogram1DViewPanel cmhp = cvtc.getLookup().lookup(Chromatogram1DViewPanel.class); cmhp.setPlot(targetPlot); cvtc.requestActive(); } }); } finally { handle.finish(); } }
From source file:net.sf.mzmine.chartbasics.ChartLogicsFX.java
/** * Returns dimensions for limiting factor width or height * /*w w w.j a v a2 s . com*/ * @param myChart * @return */ public static Dimension calcMaxSize(ChartViewer myChart, double chartWidth, double chartHeight) { makeChartResizable(myChart); // paint on a ghost panel myChart.getCanvas().draw(); XYPlot plot = (XYPlot) myChart.getChart().getPlot(); ChartRenderingInfo info = myChart.getRenderingInfo(); Rectangle2D dataArea = info.getPlotInfo().getDataArea(); Rectangle2D chartArea = info.getChartArea(); // calc title space: will be added later to the right plot size double titleWidth = chartArea.getWidth() - dataArea.getWidth(); double titleHeight = chartArea.getHeight() - dataArea.getHeight(); // calculatig width for max height // calc right plot size with axis dim. // real plot width is given by factor; double realPH = chartHeight - titleHeight; // ranges ValueAxis domainAxis = plot.getDomainAxis(); org.jfree.data.Range x = domainAxis.getRange(); ValueAxis rangeAxis = plot.getRangeAxis(); org.jfree.data.Range y = rangeAxis.getRange(); // real plot height can be calculated by double realPW = realPH / y.getLength() * x.getLength(); double width = realPW + titleWidth; // if width is higher than given chartWidth then calc height for chartWidth if (width > chartWidth) { // calc right plot size with axis dim. // real plot width is given by factor; realPW = chartWidth - titleWidth; // real plot height can be calculated by realPH = realPW / x.getLength() * y.getLength(); double height = realPH + titleHeight; // Return size return new Dimension((int) chartWidth, (int) height); } else { // Return size return new Dimension((int) width, (int) chartHeight); } }
From source file:speedbagalg.OscopeView.java
private void vMaxSpinnerStateChanged(javax.swing.event.ChangeEvent evt)//GEN-FIRST:event_vMaxSpinnerStateChanged {//GEN-HEADEREND:event_vMaxSpinnerStateChanged final XYPlot plot = chart.getXYPlot(); ValueAxis axis = plot.getRangeAxis(); axis.setAutoRange(false);/*from w ww . ja v a 2s. c o m*/ vMax = (int) vMaxSpinner.getValue(); axis.setRange(vMin, vMax); }
From source file:EHRAppointment.ChartPanelDraw.java
private ChartPanel createChart(XYDataset dataset, String type) { final JFreeChart chart = ChartFactory.createTimeSeriesChart(type, "Date", getValueAxis(), dataset); chart.setBackgroundPaint(Color.white); final XYPlot plot = chart.getXYPlot(); plot.setBackgroundPaint(Color.WHITE); plot.setDomainGridlinePaint(Color.black); plot.setRangeGridlinePaint(Color.black); final XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer(); renderer.setSeriesLinesVisible(0, true); plot.setRenderer(renderer);/* w w w .j ava2s . c o m*/ final NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); return new ChartPanel(chart); }
From source file:edu.ucla.stat.SOCR.chart.demo.LineChartDemo3.java
/** * Creates a chart.//from w w w. java 2 s. c o m * * @param dataset a dataset. * * @return A chart based on the supplied dataset. */ protected JFreeChart createChart(XYDataset dataset) { JFreeChart chart = ChartFactory.createXYLineChart(chartTitle, // chart title domainLabel, // x axis label rangeLabel, // y axis label dataset, // data PlotOrientation.VERTICAL, !legendPanelOn, // include legend true, // tooltips false // urls ); // NOW DO SOME OPTIONAL CUSTOMISATION OF THE CHART... // get a reference to the plot for further customisation... XYPlot plot = (XYPlot) chart.getPlot(); XYLineAndShapeRenderer renderer = (XYLineAndShapeRenderer) plot.getRenderer(); renderer.setBaseShapesVisible(true); renderer.setBaseShapesFilled(true); renderer.setDrawOutlines(true); renderer.setLegendItemLabelGenerator(new SOCRXYSeriesLabelGenerator()); // change the auto tick unit selection to integer units only... NumberAxis rangeAxis = (NumberAxis) plot.getRangeAxis(); rangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); NumberAxis domainAxis = (NumberAxis) plot.getDomainAxis(); domainAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); setXSummary(dataset); return chart; }