List of usage examples for org.jfree.chart ChartFrame ChartFrame
public ChartFrame(String title, JFreeChart chart)
From source file:net.bioclipse.chembl.moss.ui.wizard.ChemblMossWizardPage2.java
@Override public void createControl(Composite parent) { final Composite container = new Composite(parent, SWT.NONE); final GridLayout layout = new GridLayout(4, false); layout.marginRight = 2;//w ww . ja v a 2 s . com layout.marginLeft = 2; layout.marginBottom = -2; layout.marginTop = 10; layout.marginWidth = 2; layout.marginHeight = 2; layout.verticalSpacing = 5; layout.horizontalSpacing = 5; container.setLayout(layout); PlatformUI.getWorkbench().getHelpSystem().setHelp(container, "net.bioclipse.moss.business.helpmessage"); setControl(container); setMessage("Select the first protein family to compare with substructure mining."); setPageComplete(true); label = new Label(container, SWT.NONE); gridData = new GridData(GridData.FILL); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; label.setLayoutData(gridData); label.setText("Choose Kinase Protein Familes"); cbox = new Combo(container, SWT.READ_ONLY); cbox.setToolTipText("Kinase family"); gridData = new GridData(); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; gridData.widthHint = 100; cbox.setLayoutData(gridData); String[] items = { "TK", "TKL", "STE", "CK1", "CMGC", "AGC", "CAMK" }; cbox.setItems(items); cbox.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { final String selected = cbox.getItem(cbox.getSelectionIndex()); try { table.clearAll(); table.removeAll(); setErrorMessage(null); List<String> list = chembl.mossAvailableActivities(selected); if (list.size() > 0) { String[] item = new String[list.size()]; for (int i = 0; i < list.size(); i++) { item[i] = list.get(i); } if (cboxAct.isEnabled()) { if (cboxAct.getSelection().x == cboxAct.getSelection().y) { cboxAct.setItems(item); } else { //Solves the problem involving changing the protein family... //Brings the current activities to an array String oldItems[] = cboxAct.getItems(); // Takes that array and makes it a list for (int i = 0; i < list.size(); i++) { cboxAct.add(item[i]); } //Remove the old items in the combobox int oldlistsize = cboxAct.getItemCount() - list.size(); index = cboxAct.getText();//cboxAct.getItem(cboxAct.getSelectionIndex()); cboxAct.remove(0, oldlistsize - 1); //Adds new items to the comboboxlist List<String> oldItemsList = new ArrayList<String>(); for (int i = 0; i < oldItems.length; i++) { oldItemsList.add(oldItems[i]); } //New query with the given settings //if(oldItemsList.contains((index))==true){ if (list.contains((index)) == true) { spinn.setSelection(50); IStringMatrix matrix, matrix2; try { matrix = chembl.mossGetCompoundsFromProteinFamilyWithActivity(selected, index, spinn.getSelection()); matrix2 = chembl.mossGetCompoundsFromProteinFamily(selected, index); cboxAct.setText(index); info.setText("Distinct compunds: " + matrix2.getRowCount()); addToTable(matrix); } catch (BioclipseException e1) { // TODO Auto-generated catch block e1.printStackTrace(); } } else { setErrorMessage("The activity " + index + " does not exist for the protein family " + selected + "."); info.setText("Total compund hit:"); setPageComplete(false); } } } else { cboxAct.setItems(item); cboxAct.setEnabled(true); } } } catch (BioclipseException e1) { e1.printStackTrace(); } } }); /*Returns the available compunds for the family*/ label = new Label(container, SWT.NONE); gridData = new GridData(GridData.FILL); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; label.setLayoutData(gridData); label.setText("Choose one available activity"); cboxAct = new Combo(container, SWT.READ_ONLY); gridData = new GridData(GridData.FILL); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; gridData.widthHint = 100; String[] item = { "No available activity" }; cboxAct.setItems(item); cboxAct.setLayoutData(gridData); cboxAct.setEnabled(false); cboxAct.setToolTipText("These activities are only accurate for chosen protein"); //Listener for available activities(IC50, Ki etc) cboxAct.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { String selected = cboxAct.getItem(cboxAct.getSelectionIndex()); try { setErrorMessage(null); table.clearAll(); table.removeAll(); spinn.setSelection(50); check.setSelection(false); spinnLow.setEnabled(false); spinnHigh.setEnabled(false); spinnLow.setSelection(0); spinnHigh.setSelection(1000); //SPARQL queries for fetching compounds and activities IStringMatrix matrix = chembl.mossGetCompoundsFromProteinFamilyWithActivity( cbox.getItem(cbox.getSelectionIndex()), selected, spinn.getSelection()); addToTable(matrix); //Count the amount of compounds there is for one hit, i.e. same query without limit. IStringMatrix matrix2 = chembl.mossGetCompoundsFromProteinFamily( cbox.getItem(cbox.getSelectionIndex()), cboxAct.getItem(cboxAct.getSelectionIndex())); info.setText("Distinct compounds: " + matrix2.getRowCount()); //Query for activities. Adds them to the plot series. matrixAct = chembl.mossGetCompoundsFromProteinFamilyWithActivity( cbox.getItem(cbox.getSelectionIndex()), selected); //IStringMatrix matrix = chembl.MossProtFamilyCompounds(cbox.getItem(cbox.getSelectionIndex()), selected,50); //IStringMatrix matrix = chembl.MossProtFamilyCompounds(cbox.getItem(cbox.getSelectionIndex()), selected, spinn.getSelection()); //Adds activity to histogram series series = new XYSeries("Activity for compounds"); histogramSeries = new HistogramDataset(); histogramSeries.setType(HistogramType.FREQUENCY); ArrayList<Double> activites = new ArrayList<Double>(); double value; int cnt = 1; double[] histact = new double[matrixAct.getRowCount() + 1]; for (int i = 1; i < matrixAct.getRowCount() + 1; i++) { if (matrixAct.get(i, "actval").equals("")) { value = 0; } else { value = Double.parseDouble(matrixAct.get(i, "actval")); } activites.add(value); } //Sort list to increasing order of activities and adds them to histogram Collections.sort(activites); for (int i = 0; i < activites.size(); i++) { double d = activites.get(i); histact[i] = d; int t = activites.size() - 1; if (i == t) { series.add(d, cnt); } else { double dd = activites.get(i + 1); if (d == dd) { cnt++; } else { histact[i] = d; series.add(d, cnt); cnt = 1; } } } histogramSeries.addSeries("Histogram", histact, matrixAct.getRowCount()); button.setEnabled(true); spinn.setEnabled(true); check.setEnabled(true); //cboxAct.setEnabled(true); //buttonH.setEnabled(true); } catch (BioclipseException e1) { e1.printStackTrace(); } setPageComplete(true); } }); label = new Label(container, SWT.NONE); gridData = new GridData(); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; label.setLayoutData(gridData); label.setText("Limit"); spinn = new Spinner(container, SWT.BORDER); gridData = new GridData(); spinn.setLayoutData(gridData); spinn.setSelection(50); spinn.setMaximum(10000000); spinn.setIncrement(50); spinn.setEnabled(false); gridData.widthHint = 100; gridData.horizontalSpan = 1; spinn.setToolTipText("Limits the search, increases by 50"); spinn.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { int selected = spinn.getSelection(); try { table.clearAll(); table.removeAll(); IStringMatrix matrix = chembl.mossGetCompounds(cbox.getItem(cbox.getSelectionIndex()), cboxAct.getItem(cboxAct.getSelectionIndex()), selected); table.setVisible(true); addToTable(matrix); } catch (BioclipseException e1) { e1.printStackTrace(); } } }); //Button that adds all hits to the limit button = new Button(container, SWT.PUSH); button.setToolTipText("Add all compounds to the table"); button.setText("Display all"); button.setEnabled(false); button.setLayoutData(gridData); gridData = new GridData(); gridData.horizontalSpan = 1; button.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { //try { table.removeAll(); // ProgressMonitorDialog dialog = new ProgressMonitorDialog(container.getShell()); // // try { // dialog.run(true, true, new IRunnableWithProgress(){ // public void run(IProgressMonitor monitor) { // monitor.beginTask("Searching for compounds", IProgressMonitor.UNKNOWN); try { IStringMatrix matrix = chembl.mossGetCompoundsFromProteinFamilyWithActivity( cbox.getItem(cbox.getSelectionIndex()), cboxAct.getItem(cboxAct.getSelectionIndex())); // final IStringMatrix matrix = chembl.MossProtFamilyCompoundsAct("TK", "Ki"); addToTable(matrix); info.setText("Total hit(not always distinct compounds): " + matrix.getRowCount()); spinn.setSelection(matrix.getRowCount()); } catch (BioclipseException eb) { // TODO Auto-generated catch block eb.printStackTrace(); } // // monitor.done(); // } // }); // } catch (InvocationTargetException e1) { // // TODO Auto-generated catch block // e1.printStackTrace(); // } catch (InterruptedException e1) { // // TODO Auto-generated catch block // e1.printStackTrace(); // } // } catch (BioclipseException e1) { // // TODO Auto-generated catch block // e1.printStackTrace(); // } } }); label = new Label(container, SWT.NONE); label.setText("Optional: Modify activity values."); Font font1 = new Font(container.getDisplay(), "Helvetica", 13, SWT.NONE); label.setFont(font1); gridData = new GridData(); gridData.horizontalSpan = 4; gridData.verticalSpan = 5; label.setLayoutData(gridData); check = new Button(container, SWT.CHECK); check.setText("Modify activities"); check.setToolTipText("Modify data by specifying upper and lower activity limit"); check.setEnabled(false); gridData = new GridData(GridData.BEGINNING); gridData.horizontalSpan = 2; check.setLayoutData(gridData); check.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { boolean selected = check.getSelection(); if (selected == true) { spinnLow.setEnabled(true); spinnHigh.setEnabled(true); buttonUpdate.setEnabled(true); labelHigh.setEnabled(true); labelLow.setEnabled(true); buttonH.setEnabled(true); } else if (selected == false) { spinnLow.setEnabled(false); spinnHigh.setEnabled(false); buttonUpdate.setEnabled(false); labelHigh.setEnabled(false); labelLow.setEnabled(false); buttonH.setEnabled(false); } } }); label = new Label(container, SWT.NONE); label.setText("Look at activity span: "); gridData = new GridData(); gridData.horizontalSpan = 1; label.setLayoutData(gridData); buttonH = new Button(container, SWT.PUSH); buttonH.setText("Graph"); buttonH.setToolTipText("Shows activity in a graph(for all compounds)"); buttonH.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 1; buttonH.setLayoutData(gridData); buttonH.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { JFreeChart jfreechart = ChartFactory.createXYLineChart("Histogram Demo", "Activity values", "Number of compounds", histogramSeries, PlotOrientation.VERTICAL, true, false, false); // final XYSeriesCollection dataset = new XYSeriesCollection(series); // JFreeChart chart = ChartFactory.createXYBarChart( // "Activity chart", // "Activity value", // false, // "Number of Compounds", // dataset, // PlotOrientation.VERTICAL, // true, // true, // false // ); ChartFrame frame = new ChartFrame("Activities", jfreechart); frame.pack(); frame.setVisible(true); } }); // Lower activity bound for updating table labelLow = new Label(container, SWT.NONE); labelLow.setText("Lower activity limit"); labelLow.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 1; labelLow.setLayoutData(gridData); spinnLow = new Spinner(container, SWT.NONE); spinnLow.setSelection(0); spinnLow.setMaximum(10000000); spinnLow.setIncrement(50); spinnLow.setEnabled(false); spinnLow.setToolTipText("Specify lower activity limit"); gridData = new GridData(); gridData.widthHint = 100; gridData.horizontalSpan = 1; spinnLow.setLayoutData(gridData); buttonUpdate = new Button(container, SWT.PUSH); buttonUpdate.setText("Update table"); buttonUpdate.setToolTipText("Update the table with the specified activity limits"); buttonUpdate.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 2; buttonUpdate.setLayoutData(gridData); buttonUpdate.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { table.clearAll(); table.removeAll(); try { IStringMatrix matrix = chembl.mossSetActivityBound(matrixAct, spinnLow.getSelection(), spinnHigh.getSelection()); addToTable(matrix); spinn.setSelection(matrix.getRowCount()); info.setText("Total compound hit: " + matrix.getRowCount()); } catch (BioclipseException e1) { // TODO Auto-generated catch block e1.printStackTrace(); } } }); //Upper activity bound for updating table labelHigh = new Label(container, SWT.NONE); labelHigh.setText("Upper activity limit"); labelHigh.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 1; labelHigh.setLayoutData(gridData); spinnHigh = new Spinner(container, SWT.BORDER); spinnHigh.setSelection(1000); spinnHigh.setMaximum(1000000000); spinnHigh.setIncrement(50); spinnHigh.setEnabled(false); spinnHigh.setToolTipText("Specify upper activity limit"); gridData = new GridData(); gridData.widthHint = 100; gridData.horizontalSpan = 3; spinnHigh.setLayoutData(gridData); //Label for displaying compound hits info = new Label(container, SWT.NONE); gridData = new GridData(); info.setLayoutData(gridData); gridData.horizontalSpan = 4; gridData.verticalSpan = 6; gridData.widthHint = 350; info.setText("Total compound hit:"); //Table displaying contents table = new Table(container, SWT.BORDER); table.setHeaderVisible(true); table.setLinesVisible(true); gridData = new GridData(); gridData.horizontalAlignment = GridData.FILL; gridData.verticalAlignment = GridData.FILL; gridData.grabExcessHorizontalSpace = true; gridData.grabExcessVerticalSpace = true; gridData.widthHint = 300; gridData.heightHint = 300; gridData.horizontalSpan = 4; table.setLayoutData(gridData); column1 = new TableColumn(table, SWT.NONE); column1.setText("Index"); column2 = new TableColumn(table, SWT.NONE); column2.setText("Activity value"); column3 = new TableColumn(table, SWT.NONE); column3.setText("Compounds (SMILES)"); }
From source file:UserInterface.PatientRole.ManageMyVitalSignsAndFitnessRecordJPanel.java
private void createChart() { DefaultCategoryDataset vitalSignDataset = new DefaultCategoryDataset(); int selectedRow = viewVitalSignsJTable1.getSelectedRow(); ArrayList<Record> recordList = patient.getRecordHistory().getRecordList(); /*At least 2 vital sign records needed to show chart */ if (recordList.isEmpty() || recordList.size() == 1) { JOptionPane.showMessageDialog(this, "No Fitness Record or only one fitness record found. At least 2 fitness records needed to show chart!", "Warning", JOptionPane.INFORMATION_MESSAGE); return;//from w w w .ja va2s . c om } for (Record record : recordList) { vitalSignDataset.addValue(record.getStandTime(), "StandTime", record.getDate()); vitalSignDataset.addValue(record.getMoveTime(), "MoveTime", record.getDate()); vitalSignDataset.addValue(record.getExcerciseTime(), "ExcerciseTime", record.getDate()); vitalSignDataset.addValue(record.getTotalTime(), "TotalTime", record.getDate()); } JFreeChart vitalSignChart = ChartFactory.createBarChart3D("Fitness Record Chart", "Time Stamp", "Time(mins)", vitalSignDataset, PlotOrientation.VERTICAL, true, false, false); vitalSignChart.setBackgroundPaint(Color.white); CategoryPlot vitalSignChartPlot = vitalSignChart.getCategoryPlot(); vitalSignChartPlot.setBackgroundPaint(Color.lightGray); CategoryAxis vitalSignDomainAxis = vitalSignChartPlot.getDomainAxis(); vitalSignDomainAxis .setCategoryLabelPositions(CategoryLabelPositions.createUpRotationLabelPositions(Math.PI / 6.0)); NumberAxis vitalSignRangeAxis = (NumberAxis) vitalSignChartPlot.getRangeAxis(); vitalSignRangeAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits()); ChartFrame chartFrame = new ChartFrame("Chart", vitalSignChart); chartFrame.setVisible(true); chartFrame.setSize(500, 500); }
From source file:UserInterfaces.HAdministration.BloodReportJPanel.java
private void personneljButton2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_personneljButton2ActionPerformed // TODO add your handling code here: int timeofadmin = 0; int timeofnurse = 0; int timeofpathology = 0; int timeofphar = 0; int timeofphysician = 0; int timeofsurgeon = 0; for (WorkRequest workRequest : enterprise.getWorkQueue().getWorkRequestList()) { if (workRequest.getLevel2().equals(ErrorUtil.BLOOD_OR_BLOOD_PRODUCT)) { for (ErrorPerson ep : workRequest.getEpd().getErrorpersonlist()) { if (ep instanceof AdminstrationErrorPerson) { // if (ep.getEpt().getValue().equals(ErrorPerson.ErrorPersonType.ADMINSTRATION.getValue())) { timeofadmin = timeofadmin + 1; }// w ww. ja v a 2s . co m if (ep instanceof NurseErrorPerson) { timeofnurse = timeofnurse + 1; } if (ep instanceof PathologistriceErrorPerson) { timeofpathology = timeofpathology + 1; } if (ep instanceof PharmacistErrorPerson) { timeofphar = timeofphar + 1; } if (ep instanceof PhysicianErrorPerson) { timeofphysician = timeofphysician + 1; } if (ep instanceof SurgeonErrorPerson) { timeofsurgeon = timeofsurgeon + 1; } } } } DefaultCategoryDataset dataset = new DefaultCategoryDataset(); dataset.addValue(timeofadmin, "Adminstration", "Adminstration"); dataset.addValue(timeofnurse, "Nurse", "Nurse"); dataset.addValue(timeofpathology, "Pathologist", "Pathologist"); dataset.addValue(timeofphar, "Pharmacist", "Pharmacist"); dataset.addValue(timeofphysician, "Physician", "Physician"); dataset.addValue(timeofsurgeon, "Surgeon", "Surgeon"); //dataset.setValue(80, "masd", "sss"); JFreeChart chart = ChartFactory.createBarChart("Personnel", "Position", "Times", dataset, PlotOrientation.VERTICAL, false, true, false); CategoryPlot plot = chart.getCategoryPlot(); plot.setRangeGridlinePaint(Color.WHITE); ChartFrame frame = new ChartFrame("Chart for ERROR", chart); frame.setVisible(true); frame.setSize(900, 700); }
From source file:UserInterface.AdministrativeRole.ReportsJPanel.java
private void deptOpenRequestBtnActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_deptOpenRequestBtnActionPerformed // TODO add your handling code here: int countCollection = 0; int countLab = 0; int countResearch = 0; for (Organization org : enterprise.getOrganizationDirectory().getOrganizationList()) { if (org instanceof CollectionCenterOrganization) { for (WorkRequest request : org.getWorkQueue().getWorkRequestList()) { if (request.getStatus().equalsIgnoreCase("Pending With Collection Center")) { countCollection++;// ww w . jav a2 s .c o m } } } else if (org instanceof LabOrganization) { for (WorkRequest request : org.getWorkQueue().getWorkRequestList()) { if (request.getStatus().equalsIgnoreCase("Pending With Lab")) { countLab++; } } } else if (org instanceof ResearchOrganization) { for (WorkRequest request : org.getWorkQueue().getWorkRequestList()) { if (request.getStatus().equalsIgnoreCase("Sent For Research")) { countResearch++; } } } } float total = countCollection + countLab + countResearch; float pCollection = (countCollection / total) * 100; float pLab = (countLab / total) * 100; float pResearch = (countResearch / total) * 100; DefaultPieDataset pieDataSet = new DefaultPieDataset(); pieDataSet.setValue("Requests Pending With Collection Center: " + pCollection + "%", pCollection); pieDataSet.setValue("Requests Pending With Lab: " + pLab + "%", pLab); pieDataSet.setValue("Requests Pending With Research Wing: " + pResearch + "%", pResearch); JFreeChart chart = ChartFactory.createPieChart("Department Specific Pending Task", pieDataSet, true, true, true); PiePlot plot = (PiePlot) chart.getPlot(); ChartFrame frame = new ChartFrame("Department Specific Pending Task", chart); frame.setVisible(true); frame.setSize(500, 500); }
From source file:e3fraud.gui.MainWindow.java
public void actionPerformed(ActionEvent e) { //Handle open button action. if (e.getSource() == openButton) { int returnVal = fc.showOpenDialog(MainWindow.this); if (returnVal == JFileChooser.APPROVE_OPTION) { File file = fc.getSelectedFile(); //parse file this.baseModel = FileParser.parseFile(file); log.append(currentTime.currentTime() + " Opened: " + file.getName() + "." + newline); } else {//from ww w . j a va 2 s .co m log.append(currentTime.currentTime() + " Open command cancelled by user." + newline); } log.setCaretPosition(log.getDocument().getLength()); //handle Generate button } else if (e.getSource() == generateButton) { if (this.baseModel != null) { //have the user indicate the ToA via pop-up JFrame frame1 = new JFrame("Select Target of Assessment"); Map<String, Resource> actorsMap = this.baseModel.getActorsMap(); String selectedActorString = (String) JOptionPane.showInputDialog(frame1, "Which actor's perspective are you taking?", "Choose main actor", JOptionPane.QUESTION_MESSAGE, null, actorsMap.keySet().toArray(), actorsMap.keySet().toArray()[0]); if (selectedActorString == null) { log.append(currentTime.currentTime() + " Attack generation cancelled!" + newline); } else { lastSelectedActorString = selectedActorString; //have the user select a need via pop-up JFrame frame2 = new JFrame("Select graph parameter"); Map<String, Resource> needsMap = this.baseModel.getNeedsMap(); String selectedNeedString = (String) JOptionPane.showInputDialog(frame2, "What do you want to use as parameter?", "Choose need to parametrize", JOptionPane.QUESTION_MESSAGE, null, needsMap.keySet().toArray(), needsMap.keySet().toArray()[0]); if (selectedNeedString == null) { log.append("Attack generation cancelled!" + newline); } else { lastSelectedNeedString = selectedNeedString; //have the user select occurence interval via pop-up JTextField xField = new JTextField("1", 4); JTextField yField = new JTextField("500", 4); JPanel myPanel = new JPanel(); myPanel.add(new JLabel("Mininum occurences:")); myPanel.add(xField); myPanel.add(Box.createHorizontalStrut(15)); // a spacer myPanel.add(new JLabel("Maximum occurences:")); myPanel.add(yField); int result = JOptionPane.showConfirmDialog(null, myPanel, "Please Enter occurence rate interval", JOptionPane.OK_CANCEL_OPTION); if (result == JOptionPane.CANCEL_OPTION) { log.append("Attack generation cancelled!" + newline); } else if (result == JOptionPane.OK_OPTION) { startValue = Integer.parseInt(xField.getText()); endValue = Integer.parseInt(yField.getText()); selectedNeed = needsMap.get(selectedNeedString); selectedActor = actorsMap.get(selectedActorString); //Have a Worker thread to the time-consuming generation and raking (to not freeze the GUI) GenerationWorker generationWorker = new GenerationWorker(baseModel, selectedActorString, selectedActor, selectedNeed, selectedNeedString, startValue, endValue, log, lossButton, gainButton, lossGainButton, gainLossButton, groupingButton, collusionsButton) { //make it so that when Worker is done @Override protected void done() { try { progressBar.setVisible(false); System.err.println("I made it invisible"); //the Worker's result is retrieved treeModel.setRoot(get()); tree.setModel(treeModel); tree.updateUI(); tree.collapseRow(1); //tree.expandRow(0); tree.setRootVisible(false); setCursor(Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR)); } catch (InterruptedException | ExecutionException ex) { Logger.getLogger(MainWindow.class.getName()).log(Level.SEVERE, null, ex); setCursor(Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR)); log.append("Out of memory; please increase heap size of JVM"); PopUps.infoBox( "Encountered an error. Most likely out of memory; try increasing the heap size of JVM", "Error"); } } }; this.setCursor(Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR)); progressBar.setVisible(true); progressBar.setIndeterminate(true); progressBar.setString("generating..."); generationWorker.addPropertyChangeListener(new PropertyChangeListener() { public void propertyChange(PropertyChangeEvent evt) { if ("phase".equals(evt.getPropertyName())) { progressBar.setMaximum(100); progressBar.setIndeterminate(false); progressBar.setString("ranking..."); } else if ("progress".equals(evt.getPropertyName())) { progressBar.setValue((Integer) evt.getNewValue()); } } }); generationWorker.execute(); } } } } else { log.append("Load a model file first!" + newline); } } //handle the refresh button else if (e.getSource() == refreshButton) { if (lastSelectedNeedString != null && lastSelectedActorString != null) { Map<String, Resource> actorsMap = this.baseModel.getActorsMap(); Map<String, Resource> needsMap = this.baseModel.getNeedsMap(); selectedNeed = needsMap.get(lastSelectedNeedString); selectedActor = actorsMap.get(lastSelectedActorString); //Have a Worker thread to the time-consuming generation and raking (to not freeze the GUI) GenerationWorker generationWorker = new GenerationWorker(baseModel, lastSelectedActorString, selectedActor, selectedNeed, lastSelectedNeedString, startValue, endValue, log, lossButton, gainButton, lossGainButton, gainLossButton, groupingButton, collusionsButton) { //make it so that when Worker is done @Override protected void done() { try { progressBar.setVisible(false); //the Worker's result is retrieved treeModel.setRoot(get()); tree.setModel(treeModel); tree.updateUI(); tree.collapseRow(1); //tree.expandRow(0); tree.setRootVisible(false); setCursor(Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR)); } catch (InterruptedException | ExecutionException ex) { Logger.getLogger(MainWindow.class.getName()).log(Level.SEVERE, null, ex); setCursor(Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR)); log.append("Most likely out of memory; please increase heap size of JVM"); PopUps.infoBox( "Encountered an error. Most likely out of memory; try increasing the heap size of JVM", "Error"); } } }; setCursor(Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR)); progressBar.setVisible(true); progressBar.setIndeterminate(true); progressBar.setString("generating..."); generationWorker.addPropertyChangeListener(new PropertyChangeListener() { public void propertyChange(PropertyChangeEvent evt) { if ("phase".equals(evt.getPropertyName())) { progressBar.setMaximum(100); progressBar.setIndeterminate(false); progressBar.setString("ranking..."); } else if ("progress".equals(evt.getPropertyName())) { progressBar.setValue((Integer) evt.getNewValue()); } } }); generationWorker.execute(); } else { log.append(currentTime.currentTime() + " Nothing to refresh. Generate models first" + newline); } } //handle show ideal graph button else if (e.getSource() == idealGraphButton) { if (this.baseModel != null) { graph1 = GraphingTool.generateGraph(baseModel, selectedNeed, startValue, endValue, true);//expected graph ChartFrame chartframe1 = new ChartFrame("Ideal results", graph1); chartframe1.setPreferredSize(new Dimension(CHART_WIDTH, CHART_HEIGHT)); chartframe1.pack(); chartframe1.setLocationByPlatform(true); chartframe1.setVisible(true); } else { log.append(currentTime.currentTime() + " Load a model file first!" + newline); } } //Handle the graph extend button//Handle the graph extend button else if (e.getSource() == expandButton) { //make sure there is a graph to show if (graph2 == null) { log.append(currentTime.currentTime() + " No graph to display. Select one first." + newline); } else { //this makes sure both graphs have the same y axis: // double lowerBound = min(graph1.getXYPlot().getRangeAxis().getRange().getLowerBound(), graph2.getXYPlot().getRangeAxis().getRange().getLowerBound()); // double upperBound = max(graph1.getXYPlot().getRangeAxis().getRange().getUpperBound(), graph2.getXYPlot().getRangeAxis().getRange().getUpperBound()); // graph1.getXYPlot().getRangeAxis().setRange(lowerBound, upperBound); // graph2.getXYPlot().getRangeAxis().setRange(lowerBound, upperBound); chartPane.removeAll(); chartPanel = new ChartPanel(graph2); chartPanel.setPreferredSize(new Dimension(CHART_WIDTH, CHART_HEIGHT)); chartPane.add(chartPanel); chartPane.add(collapseButton); extended = true; this.setPreferredSize(new Dimension(this.getWidth() + CHART_WIDTH, this.getHeight())); JFrame frame = (JFrame) getRootPane().getParent(); frame.pack(); } } //Handle the graph collapse button//Handle the graph collapse button else if (e.getSource() == collapseButton) { System.out.println("resizing by -" + CHART_WIDTH); chartPane.removeAll(); chartPane.add(expandButton); this.setPreferredSize(new Dimension(this.getWidth() - CHART_WIDTH, this.getHeight())); chartPane.repaint(); chartPane.revalidate(); extended = false; JFrame frame = (JFrame) getRootPane().getParent(); frame.pack(); } }
From source file:UserInterfaces.HAdministration.DeviceReportJPanel.java
private void personneljButton2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_personneljButton2ActionPerformed // TODO add your handling code here: int timeofadmin = 0; int timeofnurse = 0; int timeofpathology = 0; int timeofphar = 0; int timeofphysician = 0; int timeofsurgeon = 0; int i;/*from w ww .j a v a2s .co m*/ int max = 0; for (WorkRequest workRequest : enterprise.getWorkQueue().getWorkRequestList()) { if (workRequest.getLevel2().equals(ErrorUtil.DEVICE_OR_MEDICAL)) { for (ErrorPerson ep : workRequest.getEpd().getErrorpersonlist()) { if (ep instanceof AdminstrationErrorPerson) { // if (ep.getEpt().getValue().equals(ErrorPerson.ErrorPersonType.ADMINSTRATION.getValue())) { timeofadmin = timeofadmin + 1; } if (ep instanceof NurseErrorPerson) { timeofnurse = timeofnurse + 1; } if (ep instanceof PathologistriceErrorPerson) { timeofpathology = timeofpathology + 1; } if (ep instanceof PharmacistErrorPerson) { timeofphar = timeofphar + 1; } if (ep instanceof PhysicianErrorPerson) { timeofphysician = timeofphysician + 1; } if (ep instanceof SurgeonErrorPerson) { timeofsurgeon = timeofsurgeon + 1; } } } } DefaultCategoryDataset dataset = new DefaultCategoryDataset(); dataset.addValue(timeofadmin, "Adminstration", "Adminstration"); dataset.addValue(timeofnurse, "Nurse", "Nurse"); dataset.addValue(timeofpathology, "Pathologist", "Pathologist"); dataset.addValue(timeofphar, "Pharmacist", "Pharmacist"); dataset.addValue(timeofphysician, "Physician", "Physician"); dataset.addValue(timeofsurgeon, "Surgeon", "Surgeon"); //dataset.setValue(80, "masd", "sss"); JFreeChart chart = ChartFactory.createBarChart("Personnel", "Position", "Times", dataset, PlotOrientation.VERTICAL, false, true, false); CategoryPlot plot = chart.getCategoryPlot(); plot.setRangeGridlinePaint(Color.WHITE); ChartFrame frame = new ChartFrame("Chart for ERROR", chart); frame.setVisible(true); frame.setSize(900, 700); }
From source file:UserInterfaces.HAdministration.MedicationJPanel.java
private void chartjButton1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_chartjButton1ActionPerformed // TODO add your handling code here: int timeofadmin = 0; int timeofnurse = 0; int timeofpathology = 0; int timeofphar = 0; int timeofphysician = 0; int timeofsurgeon = 0; for (WorkRequest workRequest : enterprise.getWorkQueue().getWorkRequestList()) { if (workRequest.getLevel2().equals(ErrorUtil.MEDICATION_OR_OTHER)) { for (ErrorPerson ep : workRequest.getEpd().getErrorpersonlist()) { if (ep instanceof AdminstrationErrorPerson) { // if (ep.getEpt().getValue().equals(ErrorPerson.ErrorPersonType.ADMINSTRATION.getValue())) { timeofadmin = timeofadmin + 1; }//from w w w . jav a 2s. co m if (ep instanceof NurseErrorPerson) { timeofnurse = timeofnurse + 1; } if (ep instanceof PathologistriceErrorPerson) { timeofpathology = timeofpathology + 1; } if (ep instanceof PharmacistErrorPerson) { timeofphar = timeofphar + 1; } if (ep instanceof PhysicianErrorPerson) { timeofphysician = timeofphysician + 1; } if (ep instanceof SurgeonErrorPerson) { timeofsurgeon = timeofsurgeon + 1; } } } } DefaultCategoryDataset dataset = new DefaultCategoryDataset(); dataset.addValue(timeofadmin, "Adminstration", "Adminstration"); dataset.addValue(timeofnurse, "Nurse", "Nurse"); dataset.addValue(timeofpathology, "Pathologist", "Pathologist"); dataset.addValue(timeofphar, "Pharmacist", "Pharmacist"); dataset.addValue(timeofphysician, "Physician", "Physician"); dataset.addValue(timeofsurgeon, "Surgeon", "Surgeon"); //dataset.setValue(80, "masd", "sss"); JFreeChart chart = ChartFactory.createBarChart("Personnel", "Position", "Times", dataset, PlotOrientation.VERTICAL, false, true, false); CategoryPlot plot = chart.getCategoryPlot(); plot.setRangeGridlinePaint(Color.WHITE); ChartFrame frame = new ChartFrame("Chart for ERROR", chart); frame.setVisible(true); frame.setSize(900, 700); }
From source file:net.bioclipse.chembl.moss.ui.wizard.ChemblMossWizardPage1.java
@Override public void createControl(Composite parent) { final Composite container = new Composite(parent, SWT.NONE); final GridLayout layout = new GridLayout(4, false); layout.marginRight = 2;/* w w w . ja va 2s. c om*/ layout.marginLeft = 2; layout.marginBottom = -2; layout.marginTop = 10; layout.marginWidth = 2; layout.marginHeight = 2; layout.verticalSpacing = 5; layout.horizontalSpacing = 5; container.setLayout(layout); PlatformUI.getWorkbench().getHelpSystem().setHelp(container, "net.bioclipse.moss.business.helpmessage"); setControl(container); setMessage("Select the first protein family to compare with substructure mining."); setPageComplete(false); label = new Label(container, SWT.NONE); gridData = new GridData(GridData.FILL); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; label.setLayoutData(gridData); label.setText("Choose a Kinase Protein Family"); cbox = new Combo(container, SWT.READ_ONLY); cbox.setToolTipText("Kinase family"); gridData = new GridData(); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; gridData.widthHint = 100; cbox.setLayoutData(gridData); String[] items = { "TK", "TKL", "STE", "CK1", "CMGC", "AGC", "CAMK" }; cbox.setItems(items); cbox.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { final String selected = cbox.getItem(cbox.getSelectionIndex()); try { table.clearAll(); table.removeAll(); setErrorMessage(null); List<String> list = chembl.mossAvailableActivities(selected); if (list.size() > 0) { String[] item = new String[list.size()]; for (int i = 0; i < list.size(); i++) { item[i] = list.get(i); } if (cboxAct.isEnabled()) { if (cboxAct.getSelection().x == cboxAct.getSelection().y) { cboxAct.setItems(item); } else { //Solves the problem involving changing the protein family... //Brings the current activities to an array String oldItems[] = cboxAct.getItems(); // Takes that array and makes it a list for (int i = 0; i < list.size(); i++) { cboxAct.add(item[i]); } //Remove the old items in the combobox int oldlistsize = cboxAct.getItemCount() - list.size(); index = cboxAct.getText();//cboxAct.getItem(cboxAct.getSelectionIndex()); cboxAct.remove(0, oldlistsize - 1); //Adds new items to the comboboxlist List<String> oldItemsList = new ArrayList<String>(); for (int i = 0; i < oldItems.length; i++) { oldItemsList.add(oldItems[i]); } //New query with the given settings //if(oldItemsList.contains((index))==true){ if (list.contains((index)) == true) { spinn.setSelection(50); IStringMatrix matrix, matrix2; try { matrix = chembl.mossGetCompoundsFromProteinFamilyWithActivity(selected, index, spinn.getSelection()); matrix2 = chembl.mossGetCompoundsFromProteinFamily(selected, index); helpToHistogram(chembl .mossGetCompoundsFromProteinFamilyWithActivity(selected, index)); cboxAct.setText(index); info.setText("Distinct compunds: " + matrix2.getRowCount()); addToTable(matrix); //adds info about target, activities and compounds to a file ((ChemblMossWizard) getWizard()).data.matrix3 = chembl .mossGetCompoundsFromProteinFamilyWithActivityTarget( cbox.getItem(cbox.getSelectionIndex()), cboxAct.getItem(cboxAct.getSelectionIndex()), spinn.getSelection()); //adds the query to a file ((ChemblMossWizard) getWizard()).data.query = chembl .mossGetCompoundsFromProteinFamilyWithActivitySPARQL(selected, index); } catch (BioclipseException e1) { // TODO Auto-generated catch block e1.printStackTrace(); } } else { setErrorMessage("The activity " + index + " does not exist for the protein family " + selected + "."); info.setText("Total compund hit:"); setPageComplete(false); } } } else { cboxAct.setItems(item); cboxAct.setEnabled(true); } } } catch (BioclipseException e1) { e1.printStackTrace(); } } }); /*Returns the available compunds for the family*/ label = new Label(container, SWT.NONE); gridData = new GridData(GridData.FILL); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; label.setLayoutData(gridData); label.setText("Choose one available activity"); cboxAct = new Combo(container, SWT.READ_ONLY); gridData = new GridData(GridData.FILL); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; gridData.widthHint = 100; String[] item = { "No available activity" }; cboxAct.setItems(item); cboxAct.setLayoutData(gridData); cboxAct.setEnabled(false); cboxAct.setToolTipText("These activities are only accurate for chosen protein"); //Listener for available activities(IC50, Ki etc) cboxAct.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { String selected = cboxAct.getItem(cboxAct.getSelectionIndex()); try { setErrorMessage(null); table.clearAll(); table.removeAll(); spinn.setSelection(50); check.setSelection(false); spinnLow.setEnabled(false); spinnHigh.setEnabled(false); spinnLow.setSelection(0); spinnHigh.setSelection(1000); //SPARQL queries for fetching compounds and activities IStringMatrix matrix = chembl.mossGetCompoundsFromProteinFamilyWithActivity( cbox.getItem(cbox.getSelectionIndex()), selected, spinn.getSelection()); addToTable(matrix); //Count the amount of compounds there is for one hit, i.e. same query without limit. IStringMatrix matrix2 = chembl.mossGetCompoundsFromProteinFamily( cbox.getItem(cbox.getSelectionIndex()), cboxAct.getItem(cboxAct.getSelectionIndex())); info.setText("Distinct compounds: " + matrix2.getRowCount()); //Query for activities. Adds them to the plot series. matrixAct = chembl.mossGetCompoundsFromProteinFamilyWithActivity( cbox.getItem(cbox.getSelectionIndex()), selected); //IStringMatrix matrix = chembl.MossProtFamilyCompounds(cbox.getItem(cbox.getSelectionIndex()), selected,50); //IStringMatrix matrix = chembl.MossProtFamilyCompounds(cbox.getItem(cbox.getSelectionIndex()), selected, spinn.getSelection()); ((ChemblMossWizard) getWizard()).data.matrix3 = chembl .mossGetCompoundsFromProteinFamilyWithActivityTarget( cbox.getItem(cbox.getSelectionIndex()), selected, spinn.getSelection()); ((ChemblMossWizard) getWizard()).data.query = chembl .mossGetCompoundsFromProteinFamilyWithActivitySPARQL( cbox.getItem(cbox.getSelectionIndex()), selected); //Adds activity to histogram series helpToHistogram(matrixAct); // series = new XYSeries("Activity for compounds"); // histogramSeries = new HistogramDataset(); // histogramSeries.setType(HistogramType.FREQUENCY); // ArrayList<Double> activites = new ArrayList<Double>(); // double value; // int cnt =1; // double[] histact = new double[matrixAct.getRowCount()+1]; // for(int i = 1; i< matrixAct.getRowCount()+1;i++){ // if(matrixAct.get(i,"actval").equals("")){ value =0;} // else{value = Double.parseDouble(matrixAct.get(i,"actval"));} // activites.add(value); // } // //Sort list to increasing order of activities and adds them to histogram // Collections.sort(activites); // for(int i=0; i< activites.size(); i++){ // double d=activites.get(i); // histact[i]=d; // int t= activites.size()-1; // if(i == t){ // series.add(d,cnt); // }else{ // double dd= activites.get(i+1); // // if(d==dd){ // cnt++; // } // else{ // histact[i]=d; // series.add(d,cnt); // cnt =1; // } // } // } // histogramSeries.addSeries("Histogram",histact,matrixAct.getRowCount()); button.setEnabled(true); spinn.setEnabled(true); check.setEnabled(true); //cboxAct.setEnabled(true); //buttonH.setEnabled(true); } catch (BioclipseException e1) { e1.printStackTrace(); } setPageComplete(true); } }); label = new Label(container, SWT.NONE); gridData = new GridData(); gridData.grabExcessHorizontalSpace = true; gridData.horizontalSpan = 2; label.setLayoutData(gridData); label.setText("Limit"); spinn = new Spinner(container, SWT.BORDER); gridData = new GridData(); spinn.setLayoutData(gridData); spinn.setSelection(50); spinn.setMaximum(10000000); spinn.setIncrement(50); spinn.setEnabled(false); gridData.widthHint = 100; gridData.horizontalSpan = 1; spinn.setToolTipText("Limits the search, increases by 50"); spinn.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { int selected = spinn.getSelection(); try { table.clearAll(); table.removeAll(); IStringMatrix matrix = chembl.mossGetCompounds(cbox.getItem(cbox.getSelectionIndex()), cboxAct.getItem(cboxAct.getSelectionIndex()), selected); table.setVisible(true); addToTable(matrix); } catch (BioclipseException e1) { e1.printStackTrace(); } } }); //Button that adds all hits to the limit button = new Button(container, SWT.PUSH); button.setToolTipText("Add all compounds to the table"); button.setText("Display all"); button.setEnabled(false); button.setLayoutData(gridData); gridData = new GridData(); gridData.horizontalSpan = 1; button.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { //try { table.removeAll(); // ProgressMonitorDialog dialog = new ProgressMonitorDialog(container.getShell()); // // try { // dialog.run(true, true, new IRunnableWithProgress(){ // public void run(IProgressMonitor monitor) { // monitor.beginTask("Searching for compounds", IProgressMonitor.UNKNOWN); try { IStringMatrix matrix = chembl.mossGetCompoundsFromProteinFamilyWithActivity( cbox.getItem(cbox.getSelectionIndex()), cboxAct.getItem(cboxAct.getSelectionIndex())); // final IStringMatrix matrix = chembl.MossProtFamilyCompoundsAct("TK", "Ki"); addToTable(matrix); info.setText("Total hit(not always distinct compounds): " + matrix.getRowCount()); spinn.setSelection(matrix.getRowCount()); } catch (BioclipseException eb) { // TODO Auto-generated catch block eb.printStackTrace(); } // // monitor.done(); // } // }); // } catch (InvocationTargetException e1) { // // TODO Auto-generated catch block // e1.printStackTrace(); // } catch (InterruptedException e1) { // // TODO Auto-generated catch block // e1.printStackTrace(); // } // } catch (BioclipseException e1) { // // TODO Auto-generated catch block // e1.printStackTrace(); // } } }); // label = new Label(container, SWT.NONE); // label.setText("Optional: Modify activity values."); // gridData = new GridData(); // gridData.horizontalSpan=4; // gridData.verticalSpan=5; // label.setLayoutData(gridData); check = new Button(container, SWT.CHECK); check.setText("Modify activities (optional)"); check.setToolTipText("Modify data by specifying upper and lower activity limit"); check.setEnabled(false); gridData = new GridData(GridData.BEGINNING); gridData.horizontalSpan = 2; check.setLayoutData(gridData); check.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { boolean selected = check.getSelection(); if (selected == true) { spinnLow.setEnabled(true); spinnHigh.setEnabled(true); buttonUpdate.setEnabled(true); labelHigh.setEnabled(true); labelLow.setEnabled(true); buttonH.setEnabled(true); } else if (selected == false) { spinnLow.setEnabled(false); spinnHigh.setEnabled(false); buttonUpdate.setEnabled(false); labelHigh.setEnabled(false); labelLow.setEnabled(false); buttonH.setEnabled(false); } } }); label = new Label(container, SWT.NONE); label.setText("Look at activity span: "); label.setToolTipText("The graph don't consider limited search, will display for all available compounds"); gridData = new GridData(); gridData.horizontalSpan = 1; label.setLayoutData(gridData); buttonH = new Button(container, SWT.PUSH); buttonH.setText("Graph"); buttonH.setToolTipText("Shows activity in a graph(for all compounds)"); buttonH.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 1; buttonH.setLayoutData(gridData); buttonH.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { JFreeChart jfreechart = ChartFactory.createXYLineChart("Histogram Demo", "Activity values", "Number of compounds", histogramSeries, PlotOrientation.VERTICAL, true, false, false); // final XYSeriesCollection dataset = new XYSeriesCollection(series); // JFreeChart chart = ChartFactory.createXYBarChart( // "Activity chart", // "Activity value", // false, // "Number of Compounds", // dataset, // PlotOrientation.VERTICAL, // true, // true, // false // ); ChartFrame frame = new ChartFrame("Activities", jfreechart); frame.pack(); frame.setVisible(true); } }); // Lower activity bound for updating table labelLow = new Label(container, SWT.NONE); labelLow.setText("Lower activity limit"); labelLow.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 1; labelLow.setLayoutData(gridData); spinnLow = new Spinner(container, SWT.NONE); spinnLow.setSelection(1); spinnLow.setMaximum(10000000); spinnLow.setIncrement(50); spinnLow.setEnabled(false); spinnLow.setToolTipText("Specify lower activity limit"); gridData = new GridData(); gridData.widthHint = 100; gridData.horizontalSpan = 1; spinnLow.setLayoutData(gridData); buttonUpdate = new Button(container, SWT.PUSH); buttonUpdate.setText("Update table"); buttonUpdate.setToolTipText("Update the table with the specified activity limits"); buttonUpdate.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 2; buttonUpdate.setLayoutData(gridData); buttonUpdate.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent e) { table.clearAll(); table.removeAll(); try { IStringMatrix mmatrixAct = chembl.mossGetCompoundsFromProteinFamilyWithActivity( cbox.getItem(cbox.getSelectionIndex()), cboxAct.getText()); IStringMatrix matrix = chembl.mossSetActivityBound(mmatrixAct, spinnLow.getSelection(), spinnHigh.getSelection()); // IStringMatrix m = chembl.mossSetActivityOutsideBound(matrixAct, spinnLow.getSelection(), spinnHigh.getSelection()); addToTable(matrix); int yes = 0, no = 0; for (int index = 1; index < matrix.getRowCount() + 1; index++) { if (matrix.get(index, "active").equals("yes")) { yes++; } else no++; } spinn.setSelection(matrix.getRowCount()); info.setText("Total compound hit: " + matrix.getRowCount() + ": active: " + yes + ", inactive: " + no); } catch (BioclipseException e1) { // TODO Auto-generated catch block e1.printStackTrace(); } } }); //Upper activity bound for updating table labelHigh = new Label(container, SWT.NONE); labelHigh.setText("Upper activity limit"); labelHigh.setEnabled(false); gridData = new GridData(); gridData.horizontalSpan = 1; labelHigh.setLayoutData(gridData); spinnHigh = new Spinner(container, SWT.BORDER); spinnHigh.setSelection(1000); spinnHigh.setMaximum(1000000000); spinnHigh.setIncrement(50); spinnHigh.setEnabled(false); spinnHigh.setToolTipText("Specify upper activity limit"); gridData = new GridData(); gridData.widthHint = 100; gridData.horizontalSpan = 3; spinnHigh.setLayoutData(gridData); //Label for displaying compound hits info = new Label(container, SWT.NONE); gridData = new GridData(); info.setLayoutData(gridData); gridData.horizontalSpan = 4; gridData.verticalSpan = 6; gridData.widthHint = 350; info.setText("Total compound hit:"); //Table displaying contents table = new Table(container, SWT.BORDER); table.setHeaderVisible(true); table.setLinesVisible(true); gridData = new GridData(); gridData.horizontalAlignment = GridData.FILL; gridData.verticalAlignment = GridData.FILL; gridData.grabExcessHorizontalSpace = true; gridData.grabExcessVerticalSpace = true; gridData.widthHint = 300; gridData.heightHint = 300; gridData.horizontalSpan = 4; table.setLayoutData(gridData); column1 = new TableColumn(table, SWT.NONE); column1.setText("Index"); column2 = new TableColumn(table, SWT.NONE); column2.setText("Activity value"); column3 = new TableColumn(table, SWT.NONE); column3.setText("Active?"); column4 = new TableColumn(table, SWT.NONE); column4.setText("Compounds (SMILES)"); }
From source file:com.neu.css.view.ViewPatientDetailsJPanel.java
private void showGraphButtonActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_showGraphButtonActionPerformed // TODO add your handling code here: int selectedRow = jTable1.getSelectedRow(); if (selectedRow >= 0) { VitalSign vitalSign = (VitalSign) jTable1.getValueAt(selectedRow, 0); DefaultPieDataset defaultPieDataset = new DefaultPieDataset(); defaultPieDataset.setValue("Repiratory Rate", vitalSign.getRespiratoryRate()); defaultPieDataset.setValue("Heart Rate", vitalSign.getHeartRate()); defaultPieDataset.setValue("Blood Pressure", vitalSign.getBloodPressure()); defaultPieDataset.setValue("Weight", vitalSign.getWeight()); JFreeChart jFreeChart = ChartFactory.createPieChart("Vital Sign Graphical Representation", defaultPieDataset, true, true, Locale.US); PiePlot piePlot = (PiePlot) jFreeChart.getPlot(); ChartFrame chartFrame = new ChartFrame("Pie Chart", jFreeChart); chartFrame.setVisible(true);// ww w. ja va 2 s.co m chartFrame.setSize(450, 500); } else { JOptionPane.showMessageDialog(null, Consts.NO_SELECTION_VALIDATE_MESSAGE, "Warning", JOptionPane.WARNING_MESSAGE); } }
From source file:tema11.GUI.java
private void PlotButton1MouseClicked(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_PlotButton1MouseClicked //TxRes.setText(" "); String p1, p2 = new String(); p1 = TxPol1.getText();/*from w w w .j av a 2s. c om*/ //p2 = TxPol2.getText(); int g1; int[] coef1; // g2 = Integer.parseInt(TxGrad2.getText()); try { g1 = Integer.parseInt(TxGrad1.getText()); coef1 = PolinomOperations.parseString(p1, g1); //coef2 = PolinomOperations.parseString(p1, g1); String chartTitle = "Object Movement Chart"; String xAxisLabel = "X"; String yAxisLabel = "Y"; XYDataset dataset = createDataset(coef1); JFreeChart chart = ChartFactory.createXYLineChart(chartTitle, xAxisLabel, yAxisLabel, dataset); BarRenderer renderer = null; CategoryPlot plot = null; renderer = new BarRenderer(); ChartFrame myFrame = new ChartFrame("Polinom chart", chart); myFrame.setLocation(200, 200); myFrame.setSize(400, 400); myFrame.setVisible(true); } catch (Exception e) { JOptionPane.showMessageDialog(this, "Wrong polinom format", "Polinom Error", JOptionPane.ERROR_MESSAGE); } }