List of usage examples for org.jdom2 Namespace getURI
public String getURI()
Namespace. From source file:ca.nrc.cadc.caom2.xml.ObservationReader.java
License:Open Source License
/** * Construct an Observation from a Reader. * * @param reader/* w w w . j a va 2 s. c om*/ * A Reader. * @return An Observation. * @throws ObservationParsingException * if there is an error parsing the XML. */ public Observation read(Reader reader) throws ObservationParsingException, IOException { if (reader == null) { throw new IllegalArgumentException("reader must not be null"); } init(); Document document; try { document = XmlUtil.buildDocument(reader, schemaMap); } catch (JDOMException jde) { String error = "XML failed schema validation: " + jde.getMessage(); throw new ObservationParsingException(error, jde); } // Root element and namespace of the Document Element root = document.getRootElement(); Namespace namespace = root.getNamespace(); log.debug("obs namespace uri: " + namespace.getURI()); log.debug("obs namespace prefix: " + namespace.getPrefix()); ReadContext rc = new ReadContext(); if (XmlConstants.CAOM2_0_NAMESPACE.equals(namespace.getURI())) { rc.docVersion = 20; } else if (XmlConstants.CAOM2_1_NAMESPACE.equals(namespace.getURI())) { rc.docVersion = 21; } else if (XmlConstants.CAOM2_2_NAMESPACE.equals(namespace.getURI())) { rc.docVersion = 22; } // Simple or Composite Attribute type = root.getAttribute("type", xsiNamespace); String tval = type.getValue(); String collection = getChildText("collection", root, namespace, false); String observationID = getChildText("observationID", root, namespace, false); // Algorithm. Algorithm algorithm = getAlgorithm(root, namespace, rc); // Create the Observation. Observation obs; String simple = namespace.getPrefix() + ":" + SimpleObservation.class.getSimpleName(); String comp = namespace.getPrefix() + ":" + CompositeObservation.class.getSimpleName(); if (simple.equals(tval)) { obs = new SimpleObservation(collection, observationID); obs.setAlgorithm(algorithm); } else if (comp.equals(tval)) { obs = new CompositeObservation(collection, observationID, algorithm); } else { throw new ObservationParsingException("unexpected observation type: " + tval); } // Observation children. String intent = getChildText("intent", root, namespace, false); if (intent != null) { obs.intent = ObservationIntentType.toValue(intent); } obs.type = getChildText("type", root, namespace, false); obs.metaRelease = getChildTextAsDate("metaRelease", root, namespace, false, rc.dateFormat); obs.sequenceNumber = getChildTextAsInteger("sequenceNumber", root, namespace, false); obs.proposal = getProposal(root, namespace, rc); obs.target = getTarget(root, namespace, rc); obs.targetPosition = getTargetPosition(root, namespace, rc); obs.requirements = getRequirements(root, namespace, rc); obs.telescope = getTelescope(root, namespace, rc); obs.instrument = getInstrument(root, namespace, rc); obs.environment = getEnvironment(root, namespace, rc); addPlanes(obs.getPlanes(), root, namespace, rc); if (obs instanceof CompositeObservation) { addMembers(((CompositeObservation) obs).getMembers(), root, namespace, rc); } assignEntityAttributes(root, obs, rc); return obs; }
From source file:ca.nrc.cadc.vos.NodeReader.java
License:Open Source License
/** * Construct a Node from a Reader./* ww w. j av a 2 s. c o m*/ * * @param reader Reader. * @return Node Node. * @throws NodeParsingException if there is an error parsing the XML. */ public Node read(Reader reader) throws NodeParsingException, IOException { if (reader == null) throw new IllegalArgumentException("reader must not be null"); // Create a JDOM Document from the XML Document document; try { // TODO: investigate creating a SAXBuilder once and re-using it // as long as we can detect concurrent access (a la java collections) document = XmlUtil.validateXml(reader, schemaMap); } catch (JDOMException jde) { String error = "XML failed schema validation: " + jde.getMessage(); throw new NodeParsingException(error, jde); } // Root element and namespace of the Document Element root = document.getRootElement(); Namespace namespace = root.getNamespace(); log.debug("node namespace uri: " + namespace.getURI()); log.debug("node namespace prefix: " + namespace.getPrefix()); /* Node base elements */ // uri attribute of the node element String uri = root.getAttributeValue("uri"); if (uri == null) { String error = "uri attribute not found in root element"; throw new NodeParsingException(error); } log.debug("node uri: " + uri); // Get the xsi:type attribute which defines the Node class String xsiType = root.getAttributeValue("type", xsiNamespace); if (xsiType == null) { String error = "xsi:type attribute not found in node element " + uri; throw new NodeParsingException(error); } // Split the type attribute into namespace and Node type String[] types = xsiType.split(":"); String type = types[1]; log.debug("node type: " + type); try { if (type.equals(ContainerNode.class.getSimpleName())) return buildContainerNode(root, namespace, uri); else if (type.equals(DataNode.class.getSimpleName())) return buildDataNode(root, namespace, uri); else if (type.equals(UnstructuredDataNode.class.getSimpleName())) return buildUnstructuredDataNode(root, namespace, uri); else if (type.equals(LinkNode.class.getSimpleName())) return buildLinkNode(root, namespace, uri); else if (type.equals(StructuredDataNode.class.getSimpleName())) return buildStructuredDataNode(root, namespace, uri); else throw new NodeParsingException("unsupported node type " + type); } catch (URISyntaxException e) { throw new NodeParsingException("invalid uri in xml: " + e.getMessage()); } }
From source file:ca.nrc.cadc.xml.JsonOutputter.java
License:Open Source License
private boolean writeSchemaAttributes(Element e, PrintWriter w, int i) throws IOException { boolean ret = false; // getNamespacesIntroduced: only write for newly introduced namespaces; // this correctly handles the current context of namespaces from root to // current element for (Namespace ans : e.getNamespacesIntroduced()) { String uri = ans.getURI(); String pre = ans.getPrefix(); if (ret) { w.print(","); }/*from w w w .j a v a 2 s . c om*/ ret = true; indent(w, i); writeSchema(uri, pre, w); } return ret; }
From source file:com.cybernostics.jsp2thymeleaf.api.elements.ActiveNamespaces.java
public static void add(Namespace ns) { namespaces.putIfAbsent(ns.getURI(), ns); }
From source file:com.init.octo.schema.XSDCache.java
License:Open Source License
private void cacheNamespace(Namespace namespace) { String prefix = namespace.getPrefix(); String uri = namespace.getURI(); namespaceCache[namespaceIdx].put(prefix, uri); }
From source file:com.rometools.rome.io.impl.RSS091UserlandGenerator.java
License:Open Source License
@Override protected void populateItem(final Item item, final Element eItem, final int index) { super.populateItem(item, eItem, index); final Description description = item.getDescription(); if (description != null) { eItem.addContent(generateSimpleElement("description", description.getValue())); }//from www . j av a 2s. c om final Namespace contentNamespace = getContentNamespace(); final Content content = item.getContent(); if (item.getModule(contentNamespace.getURI()) == null && content != null) { final Element elem = new Element("encoded", contentNamespace); elem.addContent(content.getValue()); eItem.addContent(elem); } }
From source file:de.nava.informa.parsers.Atom_1_0_Parser.java
License:Open Source License
/** * @see de.nava.informa.core.ChannelParserIF#parse(de.nava.informa.core.ChannelBuilderIF, org.jdom2.Element) *//*w w w. java 2 s . co m*/ public ChannelIF parse(ChannelBuilderIF cBuilder, Element channel) throws ParseException { if (cBuilder == null) { throw new RuntimeException("Without builder no channel can " + "be created."); } Date dateParsed = new Date(); Namespace defNS = ParserUtils.getDefaultNS(channel); if (defNS == null) { defNS = Namespace.NO_NAMESPACE; LOGGER.info("No default namespace found."); } else if ((defNS.getURI() == null) || !defNS.getURI().equals("http://www.w3.org/2005/Atom")) { LOGGER.warn("Namespace is not really supported, still trying assuming Atom 1.0 format"); } LOGGER.debug("start parsing."); // --- read in channel information // Lower the case of these tags to simulate case-insensitive parsing ParserUtils.matchCaseOfChildren(channel, new String[] { "title", "subtitle", "updated", "published", "author", "generator", "rights", "link", "entry" }); // TODO icon and logo: Feed element can have upto 1 logo and icon. // TODO id: Feed and all entries have a unique id string. This can // be the URL of the website. Supporting this will require API change. // TODO: Feed can optionally have category information // title element ChannelIF chnl = cBuilder.createChannel(channel, channel.getChildTextTrim("title", defNS)); chnl.setFormat(ChannelFormat.ATOM_1_0); // description element if (channel.getChild("subtitle") != null) { chnl.setDescription(channel.getChildTextTrim("subtitle", defNS)); } // TODO: should we use summary element? // lastbuild element : updated ? Element updated = channel.getChild("updated", defNS); if (updated != null) { chnl.setPubDate(ParserUtils.getDate(updated.getTextTrim())); } // author element List authors = channel.getChildren("author", defNS); chnl.setCreator(getAuthorString(authors, defNS)); // TODO we are ignoring contributors information // generator element Element generator = channel.getChild("generator", defNS); if (generator != null) { chnl.setGenerator(generator.getTextTrim()); } // TODO generator can have URI and version information // copyright element Element rights = channel.getChild("rights", defNS); if (rights != null) { chnl.setCopyright(AtomParserUtils.getValue(rights, getMode(rights))); } List links = channel.getChildren("link", defNS); Iterator i = links.iterator(); URL linkUrl = null; while (i.hasNext()) { Element linkElement = (Element) i.next(); // use first 'alternate' link // if rel is not present, use first link without rel String rel = linkElement.getAttributeValue("rel"); String href = linkElement.getAttributeValue("href"); // TODO we need to handle relative links also if ((rel == null) && (href != null) && (linkUrl == null)) { linkUrl = ParserUtils.getURL(href); } else if ((rel != null) && (href != null) && rel.equals("alternate")) { linkUrl = ParserUtils.getURL(href); break; } } if (linkUrl != null) { chnl.setSite(linkUrl); } List items = channel.getChildren("entry", defNS); i = items.iterator(); while (i.hasNext()) { Element item = (Element) i.next(); // Lower the case of these tags to simulate case-insensitive parsing ParserUtils.matchCaseOfChildren(item, new String[] { "title", "link", "content", "summary", "published", "author" }); // TODO entry, if copied from some other feed, may have source element // TODO each entry can have its own rights declaration // get title element Element elTitle = item.getChild("title", defNS); String strTitle = "<No Title>"; if (elTitle != null) { strTitle = AtomParserUtils.getValue(elTitle, getMode(elTitle)); LOGGER.debug("Parsing title " + elTitle.getTextTrim() + "->" + strTitle); } if (LOGGER.isDebugEnabled()) { LOGGER.debug("Entry element found (" + strTitle + ")."); } // get link element String strLink = AtomParserUtils.getItemLink(item, defNS); // get description element String strDesc = getDescription(item, defNS); // generate new news item (link to article) ItemIF curItem = cBuilder.createItem(item, chnl, strTitle, strDesc, ParserUtils.getURL(strLink)); //TODO enclosure data curItem.setFound(dateParsed); List itemAuthors = item.getChildren("author", defNS); curItem.setCreator(getAuthorString(itemAuthors, defNS)); // get published element Element elIssued = item.getChild("published", defNS); if (elIssued == null) { // published element may not be present (but updated should be) Element elUpdated = item.getChild("updated", defNS); // TODO there should be some way to determining which one are we // returning if (elUpdated != null) { curItem.setDate(ParserUtils.getDate(elUpdated.getTextTrim())); } } else { curItem.setDate(ParserUtils.getDate(elIssued.getTextTrim())); } // get list of category elements List elCategoryList = item.getChildren("category", defNS); // categories present will be stored here Collection<CategoryIF> categories = new ArrayList<>(); // multiple category elements may be present for (Object elCategoryItem : elCategoryList) { Element elCategory = (Element) elCategoryItem; // notice: atom spec. forbids to have category "term" (="subject") // set as inner text of category tags, so we have to read it from // the "term" attribute if (elCategory != null) { // TODO: what if we have more than one category element present? // subject would be overwritten each loop and therefore represent only // the last category read, so does this make any sense? // TODO: what about adding functionality for accessing "label" or "scheme" attributes? // if set, a label should be displayed instead of the value set in term // we keep this line not to break up things which // use getSubject() to read an item category curItem.setSubject(elCategory.getAttributeValue("term")); CategoryIF c = new Category(elCategory.getAttributeValue("term")); // add current category to category list categories.add(c); } } // assign categories curItem.setCategories(categories); } // set to current date chnl.setLastUpdated(dateParsed); return chnl; }
From source file:de.nava.informa.parsers.FeedParser.java
License:Open Source License
private static synchronized ChannelIF parse(ChannelBuilderIF cBuilder, Document doc) throws ParseException { if (cBuilder == null) { throw new RuntimeException("Without builder no channel can " + "be created."); }/*from w w w . ja va 2 s.c o m*/ LOGGER.debug("start parsing."); // Get the root element (must be rss) Element root = doc.getRootElement(); String rootElement = root.getName().toLowerCase(); // Decide which parser to use if (rootElement.startsWith("rss")) { String rssVersion = root.getAttribute("version").getValue(); if (rssVersion.contains("0.91")) { LOGGER.info("Channel uses RSS root element (Version 0.91)."); return RSS_0_91_Parser.getInstance().parse(cBuilder, root); } else if (rssVersion.contains("0.92")) { LOGGER.info("Channel uses RSS root element (Version 0.92)."); // logger.warn("RSS 0.92 not fully supported yet, fall back to 0.91."); // TODO: support RSS 0.92 when aware of all subtle differences. return RSS_0_91_Parser.getInstance().parse(cBuilder, root); } else if (rootElement.contains("0.93")) { LOGGER.info("Channel uses RSS root element (Version 0.93)."); LOGGER.warn("RSS 0.93 not fully supported yet, fall back to 0.91."); // TODO: support RSS 0.93 when aware of all subtle differences. } else if (rootElement.contains("0.94")) { LOGGER.info("Channel uses RSS root element (Version 0.94)."); LOGGER.warn("RSS 0.94 not fully supported yet, will use RSS 2.0"); // TODO: support RSS 0.94 when aware of all subtle differences. return RSS_2_0_Parser.getInstance().parse(cBuilder, root); } else if (rssVersion.contains("2.0") || rssVersion.equals("2")) { LOGGER.info("Channel uses RSS root element (Version 2.0)."); return RSS_2_0_Parser.getInstance().parse(cBuilder, root); } else { throw new UnsupportedFormatException("Unsupported RSS version [" + rssVersion + "]."); } } else if (rootElement.contains("rdf")) { return RSS_1_0_Parser.getInstance().parse(cBuilder, root); } else if (rootElement.contains("feed")) { Attribute versionAttr = root.getAttribute("version"); Namespace namespace = ParserUtils.getDefaultNS(root); if (versionAttr != null) { String feedVersion = versionAttr.getValue(); if (feedVersion.contains("0.1") || feedVersion.contains("0.2")) { LOGGER.info("Channel uses feed root element (Version " + feedVersion + ")."); LOGGER.warn("This atom version is not really supported yet, assume Atom 0.3 format"); return Atom_0_3_Parser.getInstance().parse(cBuilder, root); } else if (feedVersion.contains("0.3")) { LOGGER.info("Channel uses feed root element (Version 0.3)."); return Atom_0_3_Parser.getInstance().parse(cBuilder, root); } } else if (namespace != null && namespace.getURI() != null) { if (!namespace.getURI().equals("http://www.w3.org/2005/Atom")) { LOGGER.warn("Channel uses unknown namespace in feed root element, assume Atom 1.0 format."); } else { LOGGER.info("Channel uses feed root element (Atom 1.0 format)."); } return Atom_1_0_Parser.getInstance().parse(cBuilder, root); } } // did not match anything throw new UnsupportedFormatException("Unsupported root element [" + rootElement + "]."); }
From source file:de.nava.informa.parsers.RSS_1_0_Parser.java
License:Open Source License
public ChannelIF parse(ChannelBuilderIF cBuilder, Element root) throws ParseException { if (cBuilder == null) { throw new RuntimeException("Without builder no channel can " + "be created."); }// w w w . j av a2 s. c o m Date dateParsed = new Date(); Namespace defNS = ParserUtils.getDefaultNS(root); if (defNS == null) { defNS = Namespace.NO_NAMESPACE; logger.info("No default namespace found."); } // RSS 1.0 Dublin Core Module namespace Namespace dcNS = ParserUtils.getNamespace(root, "dc"); // fall back to default name space (for retrieving descriptions) if (dcNS == null) { dcNS = defNS; } // RSS 1.0 Syndication Module namespace Namespace syNS = ParserUtils.getNamespace(root, "sy"); // RSS 1.0 Aggregation Module namespace Namespace agNS = ParserUtils.getNamespace(root, "ag"); // RSS 1.0 Administration Module namespace Namespace adminNS = ParserUtils.getNamespace(root, "admin"); // RSS 1.0 DCTerms Module namespace Namespace dctermsNS = ParserUtils.getNamespace(root, "dcterms"); // RSS 1.0 Annotation Module namespace Namespace annotateNS = ParserUtils.getNamespace(root, "annotate"); // RSS091 Module namespace Namespace rss091NS = ParserUtils.getNamespace(root, "rss091"); // Content namespace Namespace contentNS = ParserUtils.getNamespace(root, "content"); ParserUtils.matchCaseOfChildren(root, new String[] { "channel", "item", "image", "textinput" }); // Get the channel element (only one occurs) Element channel = root.getChild("channel", defNS); if (channel == null) { logger.warn("Channel element could not be retrieved from feed."); throw new ParseException("No channel element found in feed."); } // ----------------------- read in channel information ParserUtils.matchCaseOfChildren(channel, new String[] { "title", "description", "link", "creator", "managingEditor", "publisher", "errorReportsTo", "webMaster", "language", "rights", "copyright", "rating", "date", "issued", "pubdate", "lastBuildDate", "modified", "generatorAgent", "updatePeriod", "updateFrequency", "updateBase" }); // title element ChannelIF chnl = cBuilder.createChannel(channel, channel.getChildTextTrim("title", defNS)); // set channel format chnl.setFormat(ChannelFormat.RSS_1_0); // description element chnl.setDescription(channel.getChildTextTrim("description", defNS)); // link element chnl.setSite(ParserUtils.getURL(channel.getChildTextTrim("link", defNS))); // creator element Element creator = channel.getChild("creator", dcNS); if (creator == null) { creator = channel.getChild("managingEditor", rss091NS); } if (creator != null) { chnl.setCreator(creator.getTextTrim()); } // publisher element String publisher = channel.getChildTextTrim("publisher", dcNS); if (publisher == null) { Element elErrorReportsTo = channel.getChild("errorReportsTo", adminNS); if (elErrorReportsTo != null) { publisher = elErrorReportsTo.getAttributeValue("resource", ParserUtils.getNamespace(elErrorReportsTo, "rdf")); } } if (publisher == null) { publisher = channel.getChildTextTrim("webMaster", rss091NS); } chnl.setPublisher(publisher); // language element Element language = channel.getChild("language", dcNS); if (language == null) { language = channel.getChild("language", rss091NS); } if (language != null) { chnl.setLanguage(language.getTextTrim()); } // rights element Element copyright = channel.getChild("rights", dcNS); if (copyright == null) { copyright = channel.getChild("copyright", rss091NS); } if (copyright != null) { chnl.setCopyright(copyright.getTextTrim()); } // 0..1 Rating element Element rating = channel.getChild("rating", rss091NS); if (rating != null) { chnl.setRating(rating.getTextTrim()); } // 0..1 Docs element // use namespace URI chnl.setDocs(defNS.getURI()); // 0..1 pubDate element Element pubDate = channel.getChild("date", dcNS); if (pubDate == null) { pubDate = channel.getChild("issued", dctermsNS); } if (pubDate == null) { pubDate = channel.getChild("pubdate", rss091NS); } if (pubDate != null) { chnl.setPubDate(ParserUtils.getDate(pubDate.getTextTrim())); } // 0..1 lastBuildDate element Element lastBuildDate = channel.getChild("lastBuildDate"); if (lastBuildDate == null) { lastBuildDate = channel.getChild("modified", dctermsNS); } if (lastBuildDate == null) { lastBuildDate = channel.getChild("lastBuildDate", rss091NS); } if (lastBuildDate != null) { chnl.setLastBuildDate(ParserUtils.getDate(lastBuildDate.getTextTrim())); } // RSS 1.0 Administration Module support // 0..1 generator element Element elGenerator = channel.getChild("generatorAgent", adminNS); if (elGenerator != null) { Attribute generator = elGenerator.getAttribute("resource", ParserUtils.getNamespace(elGenerator, "rdf")); if (generator != null) { chnl.setGenerator(generator.getValue()); } } // RSS 1.0 Syndication Module support // 0..1 update period element Element updatePeriod = channel.getChild("updatePeriod", syNS); if (updatePeriod != null) { try { ChannelUpdatePeriod channelUpdatePeriod = ChannelUpdatePeriod .valueFromText(updatePeriod.getTextTrim()); chnl.setUpdatePeriod(channelUpdatePeriod); } catch (IllegalArgumentException ex) { logger.warn(updatePeriod.getTextTrim(), ex); } } // 0..1 update frequency element Element updateFrequency = channel.getChild("updateFrequency", syNS); if (updateFrequency != null) { chnl.setUpdateFrequency((new Integer(updateFrequency.getTextTrim())).intValue()); } // 0..1 update base element Element updateBase = channel.getChild("updateBase", syNS); if (updateBase != null) { chnl.setUpdateBase(ParserUtils.getDate(updateBase.getTextTrim())); } if ((updatePeriod != null) && updateFrequency != null) { int ttl = getTTL(chnl.getUpdatePeriod(), chnl.getUpdateFrequency()); chnl.setTtl(ttl); } // item elements List items = root.getChildren("item", defNS); Iterator i = items.iterator(); while (i.hasNext()) { Element item = (Element) i.next(); ParserUtils.matchCaseOfChildren(item, new String[] { "title", "link", "encoded", "description", "creator", "subject", "date", "sourceURL", "source", "timestamp", "reference" }); // get title element Element elTitle = item.getChild("title", defNS); String strTitle = "<No Title>"; if (elTitle != null) { strTitle = elTitle.getTextTrim(); } if (logger.isDebugEnabled()) { logger.debug("Item element found (" + strTitle + ")."); } // get link element Element elLink = item.getChild("link", defNS); String strLink = ""; if (elLink != null) { strLink = elLink.getTextTrim(); } // get description element Element elDesc = item.getChild("encoded", contentNS); if (elDesc == null) { elDesc = item.getChild("description", defNS); } if (elDesc == null) { elDesc = item.getChild("description", dcNS); } String strDesc = ""; if (elDesc != null) { strDesc = elDesc.getTextTrim(); } // generate new RSS item (link to article) ItemIF rssItem = cBuilder.createItem(item, chnl, strTitle, strDesc, ParserUtils.getURL(strLink)); rssItem.setFound(dateParsed); // get creator element Element elCreator = item.getChild("creator", dcNS); if (elCreator != null) { rssItem.setCreator(elCreator.getTextTrim()); } // get subject element Element elSubject = item.getChild("subject", dcNS); if (elSubject != null) { // TODO: Mulitple subject elements not handled currently rssItem.setSubject(elSubject.getTextTrim()); } // get date element Element elDate = item.getChild("date", dcNS); if (elDate != null) { rssItem.setDate(ParserUtils.getDate(elDate.getTextTrim())); } // get source element - default to Aggregation module, then try Dublin Core String sourceName = null; String sourceLocation = null; Date sourceTimestamp = null; Element elSourceURL = item.getChild("sourceURL", agNS); if (elSourceURL == null) { // No Aggregation module - try Dublin Core elSourceURL = item.getChild("source", dcNS); if (elSourceURL != null) { sourceLocation = elSourceURL.getTextTrim(); sourceName = "Source"; } } else { // Aggregation module sourceLocation = elSourceURL.getTextTrim(); Element elSourceName = item.getChild("source", agNS); if (elSourceName != null) { sourceName = elSourceName.getTextTrim(); } Element elSourceTimestamp = item.getChild("timestamp", agNS); if (elSourceTimestamp != null) { sourceTimestamp = ParserUtils.getDate(elSourceTimestamp.getTextTrim()); } } if (sourceLocation != null) { ItemSourceIF itemSource = cBuilder.createItemSource(rssItem, sourceName, sourceLocation, sourceTimestamp); rssItem.setSource(itemSource); } // comments element - use Annotation module Element elReference = item.getChild("reference", annotateNS); if (elReference != null) { Attribute resource = elReference.getAttribute("resource", ParserUtils.getNamespace(elReference, "rdf")); if (resource != null) { URL resourceURL = ParserUtils.getURL(resource.getValue()); if (resourceURL != null) { rssItem.setComments(resourceURL); } } } } // image element Element image = root.getChild("image", defNS); if (image != null) { ParserUtils.matchCaseOfChildren(image, new String[] { "title", "url", "link", "width", "height", "description" }); ImageIF rssImage = cBuilder.createImage(image.getChildTextTrim("title", defNS), ParserUtils.getURL(image.getChildTextTrim("url", defNS)), ParserUtils.getURL(image.getChildTextTrim("link", defNS))); Element imgWidth = image.getChild("width", defNS); if (imgWidth != null) { try { rssImage.setWidth(Integer.parseInt(imgWidth.getTextTrim())); } catch (NumberFormatException e) { logger.warn(e); } } Element imgHeight = image.getChild("height", defNS); if (imgHeight != null) { try { rssImage.setHeight(Integer.parseInt(imgHeight.getTextTrim())); } catch (NumberFormatException e) { logger.warn(e); } } Element imgDescr = image.getChild("description", defNS); if (imgDescr != null) { rssImage.setDescription(imgDescr.getTextTrim()); } chnl.setImage(rssImage); } // textinput element Element txtinp = root.getChild("textinput", defNS); if (txtinp != null) { ParserUtils.matchCaseOfChildren(image, new String[] { "title", "description", "name", "link" }); String tiTitle = null; if (txtinp.getChild("title", defNS) != null) { tiTitle = txtinp.getChild("title", defNS).getTextTrim(); } String tiDescr = null; if (txtinp.getChild("description", defNS) != null) { tiDescr = txtinp.getChild("description", defNS).getTextTrim(); } String tiName = null; if (txtinp.getChild("name", defNS) != null) { tiName = txtinp.getChild("name", defNS).getTextTrim(); } URL tiLink = null; if (txtinp.getChild("link", defNS) != null) { tiLink = ParserUtils.getURL(txtinp.getChild("link", defNS).getTextTrim()); } TextInputIF rssTextInput = cBuilder.createTextInput(tiTitle, tiDescr, tiName, tiLink); chnl.setTextInput(rssTextInput); } chnl.setLastUpdated(dateParsed); return chnl; }
From source file:edu.pitt.apollo.runmanagerservice.methods.stage.StageExperimentMethod.java
License:Apache License
@Override public void runApolloService() { XMLSerializer serializer = new XMLSerializer(); XMLDeserializer deserializer = new XMLDeserializer(); InfectiousDiseaseScenario baseScenario = idtes.getInfectiousDiseaseScenarioWithoutIntervention(); // clear all set control strategies in base baseScenario.getInfectiousDiseaseControlStrategies().clear(); List<SoftwareIdentification> modelIds = idtes.getInfectiousDiseaseTransmissionModelIds(); try {/*from w w w .j ava2s. c om*/ DataServiceAccessor dataServiceAccessor = new DataServiceAccessor(); for (SoftwareIdentification modelId : modelIds) { // create a base scenario copy String baseXml = serializer.serializeObject(baseScenario); InfectiousDiseaseScenario baseScenarioCopy = deserializer.getObjectFromMessage(baseXml, InfectiousDiseaseScenario.class); for (InfectiousDiseaseControlStrategy strategy : idtes.getInfectiousDiseaseControlStrategies()) { for (InfectiousDiseaseControlMeasure controlMeasure : strategy.getControlMeasures()) { baseScenarioCopy.getInfectiousDiseaseControlStrategies().add(controlMeasure); } } List<SensitivityAnalysisSpecification> sensitivityAnalyses = idtes.getSensitivityAnalyses(); for (SensitivityAnalysisSpecification sensitivityAnalysis : sensitivityAnalyses) { if (sensitivityAnalysis instanceof OneWaySensitivityAnalysisOfContinousVariableSpecification) { OneWaySensitivityAnalysisOfContinousVariableSpecification owsaocv = (OneWaySensitivityAnalysisOfContinousVariableSpecification) sensitivityAnalysis; double min = owsaocv.getMinimumValue(); double max = owsaocv.getMaximumValue(); double increment = (max - min) / owsaocv.getNumberOfDiscretizations().intValueExact(); String scenarioXML = serializer.serializeObject(baseScenarioCopy); double val = min; while (val <= max) { String param = owsaocv.getUniqueApolloLabelOfParameter(); Document jdomDocument; SAXBuilder jdomBuilder = new SAXBuilder(); try { jdomDocument = jdomBuilder.build( new ByteArrayInputStream(scenarioXML.getBytes(StandardCharsets.UTF_8))); } catch (JDOMException | IOException ex) { ErrorUtils.reportError(runId, "Error inserting experiment run. Error was " + ex.getMessage(), authentication); return; } Element e = jdomDocument.getRootElement(); List<Namespace> namespaces = e.getNamespacesInScope(); for (Namespace namespace : namespaces) { if (namespace.getURI().contains("http://types.apollo.pitt.edu")) { param = param.replaceAll("/", "/" + namespace.getPrefix() + ":"); param = param.replaceAll("\\[", "\\[" + namespace.getPrefix() + ":"); break; } } XPathFactory xpf = XPathFactory.instance(); XPathExpression<Element> expr; expr = xpf.compile(param, Filters.element(), null, namespaces); List<Element> elements = expr.evaluate(jdomDocument); for (Element element : elements) { element.setText(Double.toString(val)); } ByteArrayOutputStream baos = new ByteArrayOutputStream(); XMLOutputter xmlOutputter = new XMLOutputter(); xmlOutputter.output(jdomDocument, baos); InfectiousDiseaseScenario newScenario = deserializer.getObjectFromMessage( new String(baos.toByteArray()), InfectiousDiseaseScenario.class); // new scenario is ready to be staged RunSimulationMessage runSimulationMessage = new RunSimulationMessage(); runSimulationMessage.setAuthentication(authentication); runSimulationMessage .setSimulatorTimeSpecification(message.getSimulatorTimeSpecification()); runSimulationMessage.setSoftwareIdentification(modelId); runSimulationMessage.setInfectiousDiseaseScenario(newScenario); StageMethod stageMethod = new StageMethod(runSimulationMessage, runId); InsertRunResult result = stageMethod.stage(); BigInteger newRunId = result.getRunId(); MethodCallStatus status = dataServiceAccessor.getRunStatus(newRunId, authentication); if (status.getStatus().equals(MethodCallStatusEnum.FAILED)) { ErrorUtils.reportError(runId, "Error inserting run in experiment with run ID " + runId + "" + ". Error was for inserting ID " + newRunId + " with message " + status.getMessage(), authentication); return; } val += increment; } } } } dataServiceAccessor.updateStatusOfRun(runId, MethodCallStatusEnum.TRANSLATION_COMPLETED, "All runs for this experiment have been translated", authentication); } catch (DeserializationException | IOException | SerializationException | RunManagementException ex) { ErrorUtils.reportError(runId, "Error inserting experiment run. Error was " + ex.getMessage(), authentication); return; } }