Example usage for org.jdom2 Element getValue

List of usage examples for org.jdom2 Element getValue

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Introduction

In this page you can find the example usage for org.jdom2 Element getValue.

Prototype

@Override
public String getValue()

Source Link

Document

Returns the XPath 1.0 string value of this element, which is the complete, ordered content of all text node descendants of this element (i.e. the text that's left after all references are resolved and all other markup is stripped out.)

Usage

From source file:msk.drugbank4.DrugBankParser.java

License:Apache License

/**
 * reads groups for current drug/*from  ww w  .  j  a va 2s . c  o m*/
 */
private Set<String> getGroups(Element drug) {
    Set<String> set = new HashSet<String>();
    Element groups = drug.getChild("groups", nsDrugBank);
    if (groups != null) {
        List<Element> groupList = groups.getChildren("group", nsDrugBank);
        for (Element group : groupList) {
            set.add(group.getValue());
        }
    }
    return set;
}

From source file:msk.drugbank4.DrugBankParser.java

License:Apache License

/**
 * reads inchikey for current drug//ww w. ja  v a  2  s.c om
 */
private String getInchiKey(Element drug) {
    Element props = drug.getChild("calculated-properties", nsDrugBank);
    if (props != null) {
        List<Element> typeList = props.getChildren("property", nsDrugBank);
        for (Element type : typeList) {
            Element kind = type.getChild("kind", nsDrugBank);
            if (kind.getValue().equals("InChIKey")) {
                Element value = type.getChild("value", nsDrugBank);
                return value.getValue().substring(9);

            }
        }
    }
    return "";
}

From source file:org.apache.marmotta.ldclient.provider.mediawiki.MediawikiProvider.java

License:Apache License

protected List<String> parseRevision(URI resource, String requestUrl, Model model, ValueFactory valueFactory,
        Element revisions, Context context) throws RepositoryException {
    List<String> followUp = Collections.emptyList();
    if (revisions == null)
        return followUp;
    final Element rev = revisions.getChild("rev");
    if (rev == null)
        return followUp;
    final Resource subject = resource;

    if (context == Context.META && "0".equals(rev.getAttributeValue("parentid"))) {
        // This is the first revision, so we use the creation date
        addLiteralTriple(subject, Namespaces.NS_DC_TERMS + "created", rev.getAttributeValue("timestamp"),
                Namespaces.NS_XSD + "dateTime", model, valueFactory);
    }/*from ww  w.  j av a2s  . co m*/
    if (context == Context.CONTENT && rev.getValue() != null && rev.getValue().trim().length() > 0) {
        final String content = rev.getValue().trim();
        final Matcher m = REDIRECT_PATTERN.matcher(content);
        if (((Element) revisions.getParent()).getAttribute("redirect") != null && m.find()) {
            followUp = Collections.singletonList(buildApiPropQueryUrl(requestUrl, m.group(1), "info",
                    getDefaultParams("info", null), Context.REDIRECT));
        } else {
            addLiteralTriple(subject, Namespaces.NS_RSS_CONTENT + "encoded", content,
                    Namespaces.NS_XSD + "string", model, valueFactory);
        }
    }
    return followUp;
}

From source file:org.artifactory.update.md.v130beta6.ChecksumsConverter.java

License:Open Source License

@Override
public void convert(Document doc) {
    Element root = doc.getRootElement();

    Element extension = root.getChild("extension");

    // rename the extensions to additionalInfo
    extension.setName("additionalInfo");

    // now get the sha1 and md5 values

    Element sha1Node = extension.getChild("sha1");
    String sha1 = null;//w w w .j  a v  a 2s. c  o  m
    if (sha1Node != null) {
        sha1 = sha1Node.getValue();
        extension.removeContent(sha1Node);
    } else {
        log.debug("SHA1 checksum not found, setting it to {}", sha1);
    }

    Element md5Node = extension.getChild("md5");
    String md5 = null;
    if (md5Node != null) {
        md5 = md5Node.getValue();
        extension.removeContent(md5Node);
    } else {
        log.debug("MD5 checksum not found, setting it to {}", md5);
    }

    // create the new checksums nodes
    Element checksumsInfo = new Element("checksumsInfo");
    extension.addContent(checksumsInfo);
    Element checksums = new Element("checksums");
    checksumsInfo.addContent(checksums);
    addChecksum(checksums, ChecksumType.sha1, sha1);
    addChecksum(checksums, ChecksumType.md5, md5);
}

From source file:org.artifactory.version.converter.v144.MultiLdapXmlConverter.java

License:Open Source License

@Override
public void convert(Document doc) {
    Element rootElement = doc.getRootElement();
    Namespace namespace = rootElement.getNamespace();
    Element securityElement = rootElement.getChild("security", namespace);
    if (securityElement != null) {
        Element ldapSettings = securityElement.getChild("ldapSettings", namespace);
        if (ldapSettings != null) {
            String firstLdapKey = null;
            String ldapKeyToUse = null;
            List ldapSettingList = ldapSettings.getChildren("ldapSetting", namespace);
            if (ldapSettingList != null && !ldapSettingList.isEmpty()) {
                for (Object ldapSettingObject : ldapSettingList) {
                    Element ldapSetting = (Element) ldapSettingObject;
                    Element key = ldapSetting.getChild("key", namespace);
                    if (firstLdapKey == null) {
                        firstLdapKey = key.getValue();
                    }//from   ww w  .  java 2 s  .c  o m
                    Element enabledElement = ldapSetting.getChild("enabled", namespace);
                    if (Boolean.parseBoolean(enabledElement.getValue())) {
                        ldapKeyToUse = ldapSetting.getChild("key", namespace).getValue();
                    }
                }
            }
            if (ldapKeyToUse == null && firstLdapKey != null) {
                ldapKeyToUse = firstLdapKey;
            }
            if (ldapKeyToUse != null) {
                Element ldapGroupSettings = securityElement.getChild("ldapGroupSettings", namespace);
                if (ldapGroupSettings != null) {
                    List ldapGroupList = ldapGroupSettings.getChildren("ldapGroupSetting", namespace);
                    if (ldapGroupList != null && !ldapGroupList.isEmpty()) {
                        for (Object ldapGroupSettingObject : ldapGroupList) {
                            Element ldapGroupSetting = (Element) ldapGroupSettingObject;
                            Element enabledLdapElement = new Element("enabledLdap", namespace);
                            enabledLdapElement.setText(ldapKeyToUse);
                            Element enabledContent = ldapGroupSetting.getChild("enabled", namespace);
                            int index = ldapGroupSetting.indexOf(enabledContent);
                            ldapGroupSetting.addContent(index, enabledLdapElement);
                            ldapGroupSetting.removeContent(enabledContent);
                        }
                    }
                }
            }
        }
    }
}

From source file:org.esa.nest.dataio.radarsat2.Radarsat2ProductReader.java

License:Open Source License

private void readCalibrationLUT(final String lutName, final MetadataElement root, final boolean flipLUT)
        throws IOException {
    InputStream is;/*from w w  w. j a v  a2s . co  m*/
    if (dataDir.exists(dataDir.getRootFolder() + lutName + ".xml")) {
        is = dataDir.getInputStream(dataDir.getRootFolder() + lutsigma + ".xml");
    } else if (dataDir.exists(dataDir.getRootFolder() + lutName.toLowerCase() + ".xml")) {
        is = dataDir.getInputStream(dataDir.getRootFolder() + lutsigma.toLowerCase() + ".xml");
    } else {
        return;
    }

    final Document xmlDoc = XMLSupport.LoadXML(is);
    final Element rootElement = xmlDoc.getRootElement();

    final Element offsetElem = rootElement.getChild("offset");
    final double offset = Double.parseDouble(offsetElem.getValue());

    final Element gainsElem = rootElement.getChild("gains");
    final String gainsValue = gainsElem.getValue().trim().replace("  ", " ");
    final double[] gainsArray = StringUtils.toDoubleArray(gainsValue, " ");
    if (flipLUT) {
        double tmp;
        for (int i = 0; i < gainsArray.length / 2; i++) {
            tmp = gainsArray[i];
            gainsArray[i] = gainsArray[gainsArray.length - i - 1];
            gainsArray[gainsArray.length - i - 1] = tmp;
        }
    }

    final MetadataElement lut = new MetadataElement(lutName);
    root.addElement(lut);

    final MetadataAttribute offsetAttrib = new MetadataAttribute("offset", ProductData.TYPE_FLOAT64);
    offsetAttrib.getData().setElemDouble(offset);
    lut.addAttribute(offsetAttrib);

    final MetadataAttribute gainsAttrib = new MetadataAttribute("gains", ProductData.TYPE_FLOAT64,
            gainsArray.length);
    gainsAttrib.getData().setElems(gainsArray);
    lut.addAttribute(gainsAttrib);
}

From source file:org.esa.nest.dataio.terrasarx.TerraSarXProductDirectory.java

License:Open Source License

private static void readGeoRef(final Product product, final File georefFile) throws IOException {
    final Document xmlDoc = XMLSupport.LoadXML(georefFile.getAbsolutePath());
    final Element root = xmlDoc.getRootElement();
    final Element geoGrid = root.getChild("geolocationGrid");

    final Element numGridPnt = geoGrid.getChild("numberOfGridPoints");
    final Element numAzimuth = numGridPnt.getChild("azimuth");
    final int numAz = Integer.parseInt(numAzimuth.getValue());
    final Element numRange = numGridPnt.getChild("range");
    final int numRg = Integer.parseInt(numRange.getValue());

    final Element gridReferenceTime = geoGrid.getChild("gridReferenceTime");
    final Element tReferenceTimeUTC = gridReferenceTime.getChild("tReferenceTimeUTC");

    final int size = numAz * numRg;
    final double[] latList = new double[size];
    final double[] lonList = new double[size];
    final double[] incList = new double[size];
    final double[] timeList = new double[size];
    final int[] row = new int[size];
    final int[] col = new int[size];

    //final boolean flip = !isSLC();

    int i = 0;/*from   w  w  w.  j  a  va 2  s . c om*/
    int r = numRg - 1;
    int c = 0;
    boolean regridNeeded = false;
    final List<Element> grdPntList = geoGrid.getChildren("gridPoint");
    for (Element pnt : grdPntList) {
        int index = i;
        /*
        if(flip) {
        index = (numRg * c) + r;
        --r;
        if(r < 0) {
            r = numRg-1;
            ++c;
        }
        }
        */
        final Element tElem = pnt.getChild("tau");
        timeList[index] = Double.parseDouble(tElem.getValue());

        final Element latElem = pnt.getChild("lat");
        latList[index] = Double.parseDouble(latElem.getValue());
        final Element lonElem = pnt.getChild("lon");
        lonList[index] = Double.parseDouble(lonElem.getValue());

        final Element rowElem = pnt.getChild("row");
        if (rowElem != null) {
            row[index] = Integer.parseInt(rowElem.getValue()) - 1;
            regridNeeded = true;
        }
        final Element colElem = pnt.getChild("col");
        if (colElem != null) {
            col[index] = Integer.parseInt(colElem.getValue()) - 1;
        }

        final Element incElem = pnt.getChild("inc");
        incList[index] = Double.parseDouble(incElem.getValue());

        ++i;
    }

    final int gridWidth = numRg;
    final int gridHeight = numAz;
    final int newGridWidth = gridWidth;
    final int newGridHeight = gridHeight;
    float[] newLatList = new float[newGridWidth * newGridHeight];
    float[] newLonList = new float[newGridWidth * newGridHeight];
    float[] newIncList = new float[newGridWidth * newGridHeight];
    final int sceneRasterWidth = product.getSceneRasterWidth();
    final int sceneRasterHeight = product.getSceneRasterHeight();
    final double subSamplingX = sceneRasterWidth / (double) (newGridWidth - 1);
    final double subSamplingY = sceneRasterHeight / (double) (newGridHeight - 1);

    if (regridNeeded) {
        getListInEvenlySpacedGrid(sceneRasterWidth, sceneRasterHeight, gridWidth, gridHeight, col, row, latList,
                newGridWidth, newGridHeight, subSamplingX, subSamplingY, newLatList);

        getListInEvenlySpacedGrid(sceneRasterWidth, sceneRasterHeight, gridWidth, gridHeight, col, row, lonList,
                newGridWidth, newGridHeight, subSamplingX, subSamplingY, newLonList);

        getListInEvenlySpacedGrid(sceneRasterWidth, sceneRasterHeight, gridWidth, gridHeight, col, row, incList,
                newGridWidth, newGridHeight, subSamplingX, subSamplingY, newIncList);
    } else {
        for (int m = 0; m < newLatList.length; ++m) {
            newLatList[m] = (float) latList[m];
            newLonList[m] = (float) lonList[m];
            newIncList[m] = (float) incList[m];
        }
    }

    final TiePointGrid latGrid = new TiePointGrid(OperatorUtils.TPG_LATITUDE, newGridWidth, newGridHeight, 0.5f,
            0.5f, subSamplingX, subSamplingY, newLatList);
    latGrid.setUnit(Unit.DEGREES);
    product.addTiePointGrid(latGrid);

    final TiePointGrid lonGrid = new TiePointGrid(OperatorUtils.TPG_LONGITUDE, newGridWidth, newGridHeight,
            0.5f, 0.5f, subSamplingX, subSamplingY, newLonList, TiePointGrid.DISCONT_AT_180);
    lonGrid.setUnit(Unit.DEGREES);
    product.addTiePointGrid(lonGrid);

    final TiePointGrid incidentAngleGrid = new TiePointGrid(OperatorUtils.TPG_INCIDENT_ANGLE, newGridWidth,
            newGridHeight, 0.5f, 0.5f, subSamplingX, subSamplingY, newIncList);
    incidentAngleGrid.setUnit(Unit.DEGREES);
    product.addTiePointGrid(incidentAngleGrid);

    final TiePointGeoCoding tpGeoCoding = new TiePointGeoCoding(latGrid, lonGrid, Datum.WGS_84);
    product.setGeoCoding(tpGeoCoding);

    // final TiePointGrid timeGrid = new TiePointGrid("Time", gridWidth, gridHeight, 0, 0,
    //          subSamplingX, subSamplingY, timeList);
    //  timeGrid.setUnit(Unit.NANOSECONDS);
    //  product.addTiePointGrid(timeGrid);
}

From source file:org.esa.s1tbx.io.terrasarx.TerraSarXProductDirectory.java

License:Open Source License

private static void readGeoRef(final Product product, final File georefFile) throws IOException {
    final Document xmlDoc = XMLSupport.LoadXML(georefFile.getAbsolutePath());
    final Element root = xmlDoc.getRootElement();
    final Element geoGrid = root.getChild("geolocationGrid");

    final Element numGridPnt = geoGrid.getChild("numberOfGridPoints");
    final Element numAzimuth = numGridPnt.getChild("azimuth");
    final int numAz = Integer.parseInt(numAzimuth.getValue());
    final Element numRange = numGridPnt.getChild("range");
    final int numRg = Integer.parseInt(numRange.getValue());

    final Element gridReferenceTime = geoGrid.getChild("gridReferenceTime");
    final Element tReferenceTimeUTC = gridReferenceTime.getChild("tReferenceTimeUTC");

    final int size = numAz * numRg;
    final double[] latList = new double[size];
    final double[] lonList = new double[size];
    final double[] incList = new double[size];
    final double[] timeList = new double[size];
    final int[] row = new int[size];
    final int[] col = new int[size];

    //final boolean flip = !isSLC();

    int i = 0;/*w  ww . j  av  a 2  s .  com*/
    int r = numRg - 1;
    int c = 0;
    boolean regridNeeded = false;
    final List<Element> grdPntList = geoGrid.getChildren("gridPoint");
    for (Element pnt : grdPntList) {
        int index = i;
        /*
        if(flip) {
        index = (numRg * c) + r;
        --r;
        if(r < 0) {
            r = numRg-1;
            ++c;
        }
        }
        */
        final Element tElem = pnt.getChild("tau");
        timeList[index] = Double.parseDouble(tElem.getValue());

        final Element latElem = pnt.getChild("lat");
        latList[index] = Double.parseDouble(latElem.getValue());
        final Element lonElem = pnt.getChild("lon");
        lonList[index] = Double.parseDouble(lonElem.getValue());

        final Element rowElem = pnt.getChild("row");
        if (rowElem != null) {
            row[index] = Integer.parseInt(rowElem.getValue()) - 1;
            regridNeeded = true;
        }
        final Element colElem = pnt.getChild("col");
        if (colElem != null) {
            col[index] = Integer.parseInt(colElem.getValue()) - 1;
        }

        final Element incElem = pnt.getChild("inc");
        incList[index] = Double.parseDouble(incElem.getValue());

        ++i;
    }

    final int gridWidth = numRg;
    final int gridHeight = numAz;
    final int newGridWidth = gridWidth;
    final int newGridHeight = gridHeight;
    float[] newLatList = new float[newGridWidth * newGridHeight];
    float[] newLonList = new float[newGridWidth * newGridHeight];
    float[] newIncList = new float[newGridWidth * newGridHeight];
    final int sceneRasterWidth = product.getSceneRasterWidth();
    final int sceneRasterHeight = product.getSceneRasterHeight();
    final double subSamplingX = sceneRasterWidth / (double) (newGridWidth - 1);
    final double subSamplingY = sceneRasterHeight / (double) (newGridHeight - 1);

    if (regridNeeded) {
        getListInEvenlySpacedGrid(sceneRasterWidth, sceneRasterHeight, gridWidth, gridHeight, col, row, latList,
                newGridWidth, newGridHeight, subSamplingX, subSamplingY, newLatList);

        getListInEvenlySpacedGrid(sceneRasterWidth, sceneRasterHeight, gridWidth, gridHeight, col, row, lonList,
                newGridWidth, newGridHeight, subSamplingX, subSamplingY, newLonList);

        getListInEvenlySpacedGrid(sceneRasterWidth, sceneRasterHeight, gridWidth, gridHeight, col, row, incList,
                newGridWidth, newGridHeight, subSamplingX, subSamplingY, newIncList);
    } else {
        for (int m = 0; m < newLatList.length; ++m) {
            newLatList[m] = (float) latList[m];
            newLonList[m] = (float) lonList[m];
            newIncList[m] = (float) incList[m];
        }
    }

    final TiePointGrid latGrid = new TiePointGrid(OperatorUtils.TPG_LATITUDE, newGridWidth, newGridHeight, 0.5f,
            0.5f, subSamplingX, subSamplingY, newLatList);
    latGrid.setUnit(Unit.DEGREES);
    product.addTiePointGrid(latGrid);

    final TiePointGrid lonGrid = new TiePointGrid(OperatorUtils.TPG_LONGITUDE, newGridWidth, newGridHeight,
            0.5f, 0.5f, subSamplingX, subSamplingY, newLonList, TiePointGrid.DISCONT_AT_180);
    lonGrid.setUnit(Unit.DEGREES);
    product.addTiePointGrid(lonGrid);

    final TiePointGrid incidentAngleGrid = new TiePointGrid(OperatorUtils.TPG_INCIDENT_ANGLE, newGridWidth,
            newGridHeight, 0.5f, 0.5f, subSamplingX, subSamplingY, newIncList);
    incidentAngleGrid.setUnit(Unit.DEGREES);
    product.addTiePointGrid(incidentAngleGrid);

    final TiePointGeoCoding tpGeoCoding = new TiePointGeoCoding(latGrid, lonGrid);
    product.setSceneGeoCoding(tpGeoCoding);

    // final TiePointGrid timeGrid = new TiePointGrid("Time", gridWidth, gridHeight, 0, 0,
    //          subSamplingX, subSamplingY, timeList);
    //  timeGrid.setUnit(Unit.NANOSECONDS);
    //  product.addTiePointGrid(timeGrid);
}

From source file:org.esa.snap.dataio.netcdf.metadata.profiles.hdfeos.HdfEosGridInfo.java

License:Open Source License

static HdfEosGridInfo createGridInfo(Element gridElem) {
    Element gridNameElem = gridElem.getChild("GridName");
    Element projectionElem = gridElem.getChild("Projection");
    Element ulPointElem = gridElem.getChild("UpperLeftPointMtrs");
    Element lrPointElem = gridElem.getChild("LowerRightMtrs");
    Element projParamsElem = gridElem.getChild("ProjParams");

    if (gridNameElem == null || projectionElem == null || ulPointElem == null || lrPointElem == null) {
        return null;
    }/*from ww  w.  j a va 2  s  . co m*/
    String gridName = gridNameElem.getValue();
    if (gridName.isEmpty()) {
        return null;
    }
    List<Element> ulList = ulPointElem.getChildren();
    String ulLon = ulList.get(0).getValue();
    String ulLat = ulList.get(1).getValue();
    double upperLeftLon = Double.parseDouble(ulLon);
    double upperLeftLat = Double.parseDouble(ulLat);

    List<Element> lrList = lrPointElem.getChildren();
    String lrLon = lrList.get(0).getValue();
    String lrLat = lrList.get(1).getValue();
    double lowerRightLon = Double.parseDouble(lrLon);
    double lowerRightLat = Double.parseDouble(lrLat);

    String projection = projectionElem.getValue();
    HdfEosGridInfo hdfEosGridInfo = new HdfEosGridInfo(gridName, upperLeftLon, upperLeftLat, lowerRightLon,
            lowerRightLat, projection);
    if (projParamsElem != null) {
        List<Element> children = projParamsElem.getChildren();
        double[] projParameterValues = new double[children.size()];
        for (int i = 0; i < children.size(); i++) {
            Element child = children.get(i);
            projParameterValues[i] = Double.parseDouble(child.getValue());
        }
        hdfEosGridInfo.setProjectionParameter(projParameterValues);
    }
    return hdfEosGridInfo;
}

From source file:org.esa.snap.dataio.netcdf.metadata.profiles.hdfeos.HdfEosMetadataPart.java

License:Open Source License

private static void addDomToMetadata(Element childDE, String name, MetadataElement parentME) {
    if (childDE.getChildren().size() > 0 || childDE.getAttributes().size() > 0) {
        final MetadataElement childME = new MetadataElement(name);
        addDomToMetadata(childDE, childME);
        parentME.addElement(childME);//from   w  ww . j  a  v a 2  s.  co  m

        if (childDE.getAttributes().size() != 0) {
            List attrList = childDE.getAttributes();
            for (Object o : attrList) {
                Attribute attribute = (Attribute) o;
                String attributeName = attribute.getName();
                String attributeValue = attribute.getValue();
                final ProductData valueMEAtrr = ProductData.createInstance(attributeValue);
                final MetadataAttribute mdAttribute = new MetadataAttribute(attributeName, valueMEAtrr, true);
                childME.addAttribute(mdAttribute);
            }
        }
    } else {
        String valueDE = childDE.getValue();
        if (valueDE == null) {
            valueDE = "";
        }
        final ProductData valueME = ProductData.createInstance(valueDE);
        final MetadataAttribute attribute = new MetadataAttribute(name, valueME, true);
        parentME.addAttribute(attribute);
    }
}