Example usage for org.hibernate.criterion DetachedCriteria createCriteria

Introduction

In this page you can find the example usage for org.hibernate.criterion DetachedCriteria createCriteria.

Prototype

public DetachedCriteria createCriteria(String associationPath)

Source Link

Document

Creates a nested DetachedCriteria representing the association path.

Usage

From source file:gov.nih.nci.cabig.caaers.dao.AdverseEventDao.java

License:BSD License

public List<AdverseEvent> getByStudy(Study study) {
    DetachedCriteria criteria = DetachedCriteria.forClass(AdverseEvent.class);
    criteria.createCriteria("reportingPeriod").createCriteria("assignment").createCriteria("studySite")
            .createCriteria("study").add(getStudyExample(study));

    return getHibernateTemplate().findByCriteria(criteria);
}

From source file:gov.nih.nci.cabig.caaers.dao.AdverseEventDao.java

License:BSD License

public List<AdverseEvent> getByAssignment(StudyParticipantAssignment assignment) {
    DetachedCriteria criteria = DetachedCriteria.forClass(AdverseEvent.class);
    criteria.createCriteria("reportingPeriod").createCriteria("assignment")
            .add(getAssignmentExample(assignment));
    return getHibernateTemplate().findByCriteria(criteria);
}

From source file:gov.nih.nci.cabig.caaers.dao.AdverseEventDao.java

License:BSD License

public List<AdverseEvent> getByStudyParticipant(Study study, Participant participant) {

    StudyParticipantAssignment assignment = studyParticipantAssignmentDao.getAssignment(participant, study);
    DetachedCriteria criteria = DetachedCriteria.forClass(AdverseEvent.class);
    criteria.createCriteria("reportingPeriod").createCriteria("assignment")
            .add(getAssignmentExample(assignment));
    //if (study.getIdentifiers().size() > 0) {
    //criteria = criteria.createCriteria("identifiers").add(getIdentifierExample(study.getIdentifiers().get(0)));
    //}//  w  w w . j  av  a2s .c  o  m
    return getHibernateTemplate().findByCriteria(criteria);
}

From source file:gov.nih.nci.cabig.caaers.dao.AdverseEventDao.java

License:BSD License

public List<AdverseEvent> getByAdverseEventReportingPeriod(
        AdverseEventReportingPeriod adverseEventReportingPeriod, Study study, Participant participant) {
    StudyParticipantAssignment assignment = studyParticipantAssignmentDao.getAssignment(participant, study);
    DetachedCriteria criteria = DetachedCriteria.forClass(AdverseEvent.class);
    criteria.createCriteria("reportingPeriod").add(getReportingPeriodExample(adverseEventReportingPeriod))
            .createCriteria("assignment").add(getAssignmentExample(assignment));

    return getHibernateTemplate().findByCriteria(criteria);
}

From source file:gov.nih.nci.cabig.caaers.dao.AdverseEventDao.java

License:BSD License

public List<AdverseEvent> getByReport(Report report) {
    DetachedCriteria criteria = DetachedCriteria.forClass(AdverseEvent.class);
    criteria.createCriteria("reportingPeriod").createCriteria("aeReport").createCriteria("report")
            .add(getReportExample(report));

    return getHibernateTemplate().findByCriteria(criteria);
}

From source file:gov.nih.nci.cabio.annotations.ArrayAnnotationServiceImpl.java

License:BSD License

public List<CytobandPhysicalLocation> getCytobandPositions(String chromosomeNumber, String assembly)
        throws ApplicationException {

    DetachedCriteria criteria = DetachedCriteria.forClass(CytobandPhysicalLocation.class);

    criteria.setFetchMode("cytoband", FetchMode.JOIN);
    criteria.setFetchMode("chromosome", FetchMode.JOIN);

    criteria.add(Restrictions.eq("assembly", assembly));

    criteria.createCriteria("chromosome").add(Restrictions.eq("number", chromosomeNumber))
            .createCriteria("taxon").add(Restrictions.eq("abbreviation", taxon));

    List<CytobandPhysicalLocation> results = appService.query(criteria);
    return results;
}

From source file:gov.nih.nci.cabio.annotations.ArrayAnnotationServiceImpl.java

License:BSD License

public Collection<Gene> getGenesForSymbol(String hugoSymbol) throws ApplicationException {

    DetachedCriteria criteria = DetachedCriteria.forClass(Gene.class);

    criteria.createCriteria("taxon").add(Restrictions.eq("abbreviation", taxon));
    criteria.add(Restrictions.eq("hugoSymbol", hugoSymbol).ignoreCase());

    Collection<Gene> result = appService.query(criteria);
    return result;
}

From source file:gov.nih.nci.cabio.annotations.ArrayAnnotationServiceImpl.java

License:BSD License

public Collection<GeneAlias> getAliasesForGene(String symbol) throws ApplicationException {

    DetachedCriteria criteria = DetachedCriteria.forClass(Gene.class);

    criteria.setFetchMode("geneAliasCollection", FetchMode.JOIN)
            .setResultTransformer(Criteria.DISTINCT_ROOT_ENTITY);

    criteria.add(Restrictions.eq("hugoSymbol", symbol).ignoreCase());
    criteria.createCriteria("taxon").add(Restrictions.eq("abbreviation", taxon));

    List<Gene> genes = appService.query(criteria);
    if (genes.isEmpty())
        throw new ApplicationException("No gene exists with HUGO symbol " + symbol);

    List<GeneAlias> results = new ArrayList<GeneAlias>();
    for (Gene g : genes) {
        results.addAll(g.getGeneAliasCollection());
    }/*from  ww  w  .  j  a v  a 2  s  .  c  om*/

    return results;
}

From source file:gov.nih.nci.ncicb.cadsr.ocbrowser.service.impl.OCBrowserServiceImpl.java

License:BSD License

/**
 * Return all the super classes, The list sorted from super classes to subclasses
 *///from   w w w  . ja  va2 s .c o  m
public List getInheritenceRelationships(ObjectClass oc) {
    List superClasses = new ArrayList();
    ObjectClassRelationship ocr = null;
    DetachedCriteria criteria = DetachedCriteria.forClass(ObjectClassRelationship.class);
    criteria.createCriteria("sourceObjectClass").add(Expression.eq("id", oc.getId()));
    criteria.add(Expression.eq("name", "IS_A"));
    List result;
    try {
        this.getCadsrService();
        result = appService.query(criteria);
    } catch (ApplicationException e1) {
        throw new RuntimeException(e1);
    }

    if (!result.isEmpty())
        ocr = (ObjectClassRelationship) result.get(0);

    if (ocr != null && ocr.getSourceObjectClass() != null)
        superClasses.add(ocr.getSourceObjectClass());
    while (ocr != null && ocr.getTargetObjectClass() != null) {
        superClasses.add(0, ocr.getTargetObjectClass());

        criteria = DetachedCriteria.forClass(ObjectClassRelationship.class);
        criteria.createCriteria("sourceObjectClass")
                .add(Expression.eq("id", ocr.getTargetObjectClass().getId()));
        criteria.add(Expression.eq("name", "IS_A"));
        try {
            this.getCadsrService();
            result = appService.query(criteria);
        } catch (ApplicationException e) {
            throw new RuntimeException(e);
        }

        if (!result.isEmpty())
            ocr = (ObjectClassRelationship) result.get(0);
        else
            ocr = null;
    }
    return superClasses;
}

From source file:gov.nih.nci.ncicb.cadsr.ocbrowser.service.impl.OCBrowserServiceImpl.java

License:BSD License

public ClassSchemeClassSchemeItem getParentCsCsi(ClassSchemeClassSchemeItem csCsi) {
    DetachedCriteria criteria = DetachedCriteria.forClass(ClassSchemeClassSchemeItem.class);
    criteria.createCriteria("childClassSchemeClassSchemeItemCollection").add(Restrictions.idEq(csCsi.getId()));

    List result = null;/*from  w ww  .j  av  a 2  s. com*/
    try {
        this.getCadsrService();
        result = appService.query(criteria);
    } catch (ApplicationException e) {
        throw new RuntimeException(e);
    }

    if (result.size() > 0) {
        return (ClassSchemeClassSchemeItem) result.get(0);
    } else {
        return null;
    }
}