Example usage for org.dom4j Element addElement

List of usage examples for org.dom4j Element addElement

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Introduction

In this page you can find the example usage for org.dom4j Element addElement.

Prototype

Element addElement(String name);

Source Link

Document

Adds a new Element node with the given name to this branch and returns a reference to the new node.

Usage

From source file:BlastResultXMLsplit.BlastXMLsplit.java

public BlastXMLsplit(String filepath, int seqnumber)
        throws FileNotFoundException, IOException, ParserConfigurationException {
    SAXReader reader = new SAXReader();
    reader.setValidation(false);/*from   w w w .j av a  2 s  .  c o  m*/
    try {
        System.out.println("Xlmfile reading");
        Document document = reader.read(new FileInputStream(filepath));//XMLdocument?
        System.out.println("Xlmfile read done!");
        org.dom4j.DocumentFactory DocumentFactory = new org.dom4j.DocumentFactory();

        ArrayList str = new ArrayList();//??? 

        String fileoutpath;

        org.dom4j.Element rootElm = document.getRootElement();//
        File f = new File(filepath);
        int count = 1;
        List<org.dom4j.Element> blastOutput_iterations = rootElm.element("BlastOutput_iterations").elements();//?
        org.dom4j.Element BlastOutput_program = rootElm.element("BlastOutput_program");
        org.dom4j.Element BlastOutput_version = rootElm.element("BlastOutput_version");
        org.dom4j.Element BlastOutput_reference = rootElm.element("BlastOutput_reference");
        org.dom4j.Element BlastOutput_db = rootElm.element("BlastOutput_db");
        //?
        BlastOutput_program.getParent().remove(BlastOutput_program);
        BlastOutput_version.getParent().remove(BlastOutput_version);
        BlastOutput_reference.getParent().remove(BlastOutput_reference);
        BlastOutput_db.getParent().remove(BlastOutput_db);
        // org.dom4j.Element BlastOutput_query_def=rootElm.element("BlastOutput_query-def");
        //org.dom4j.Element BBlastOutput_query_len=rootElm.element("BlastOutput_query-len");

        org.dom4j.Element BlastOutput_param = rootElm.element("BlastOutput_param");
        rootElm.remove(BlastOutput_param);

        String Iteration_queryIDstr, Iteration_queryDefstr, Iteration_query_len;
        List<org.dom4j.Element> Iterationlist = null;
        int size = blastOutput_iterations.size();
        System.out.println("Your query seqcount is " + size + "\r\n Start dividing your file");
        for (int i = 0; i < size; i = i + seqnumber) {
            //??
            fileoutpath = f.getParent() + System.getProperty("file.separator") + count + ".xml";
            count++;
            System.out.println("The " + count + " is located in " + fileoutpath);
            FileOutputStream fos = new FileOutputStream(fileoutpath);
            OutputFormat format = OutputFormat.createPrettyPrint();
            XMLWriter writer = new XMLWriter(fos, format);
            // XMLWriter writer = new XMLWriter(new FileOutputStream(fileoutpath));
            //w??
            org.dom4j.Element firstelement = blastOutput_iterations.get(i);
            Iteration_queryIDstr = firstelement.element("Iteration_query-ID").getText();
            Iteration_queryDefstr = firstelement.element("Iteration_query-def").getText();
            Iteration_query_len = firstelement.element("Iteration_query-len").getText();

            //org.dom4j.DocumentFactory DocumentFactory = new org.dom4j.DocumentFactory();

            Document document2 = DocumentHelper.createDocument();
            ;
            org.dom4j.Element BlastOutputElement = document2.addElement("BlastOutput");
            //doc.setRootElement(BlastOutputElement);
            //;
            BlastOutputElement.add(BlastOutput_program);
            BlastOutputElement.add(BlastOutput_version);
            BlastOutputElement.add(BlastOutput_reference);
            BlastOutputElement.add(BlastOutput_db);
            BlastOutputElement.addElement("BlastOutput_query-ID");
            BlastOutputElement.element("BlastOutput_query-ID").setText(Iteration_queryIDstr);
            BlastOutputElement.addElement("BlastOutput_query-def");
            BlastOutputElement.element("BlastOutput_query-def").setText(Iteration_queryDefstr);
            BlastOutputElement.addElement("BlastOutput_query-len");
            BlastOutputElement.element("BlastOutput_query-len").setText(Iteration_query_len);
            //                Element BlastOutput_param_new=DocumentFactory.createElement("BlastOutput_param");
            //                for (Iterator it = BlastOutput_param.elementIterator(); it.hasNext();) {
            //                    Element tempele=(Element) it.next();
            //                    tempele.getParent().remove(tempele);
            //                    BlastOutput_param_new.add(tempele);
            //                }
            BlastOutputElement.add(BlastOutput_param);
            //BlastOutputElement.add(BlastOutput_param);
            if (i + seqnumber < blastOutput_iterations.size()) {
                Iterationlist = blastOutput_iterations.subList(i, i + seqnumber);
            } else {
                Iterationlist = blastOutput_iterations.subList(i, blastOutput_iterations.size() - 1);
            }
            //System.out.println(Iterationlist.size());
            //?query
            resetIterationlist(Iterationlist);
            //?BlastOutput_iterations

            Element BlastOutput_iterations = DocumentFactory.createElement("BlastOutput_iterations");
            //BlastOutputElement.addAttribute("BlastOutput_iterations");
            //org.dom4j.Element BlastOutput_iterations = new org.dom4j.Element("BlastOutput_iterations");
            for (int j = 0; j < Iterationlist.size(); j++) {
                Iterationlist.get(j).getParent().remove(Iterationlist.get(j));
                //System.out.println(j);
                BlastOutput_iterations.add(Iterationlist.get(j));
            }
            BlastOutputElement.add(BlastOutput_iterations);

            //
            writer.write(document2);
            writer.close();
            BlastOutput_program.getParent().remove(BlastOutput_program);
            BlastOutput_version.getParent().remove(BlastOutput_version);
            BlastOutput_reference.getParent().remove(BlastOutput_reference);
            BlastOutput_db.getParent().remove(BlastOutput_db);
            BlastOutput_param.getParent().remove(BlastOutput_param);
        }
    } catch (DocumentException ex) {
        Logger.getLogger(BlastXMLsplit.class.getName()).log(Level.SEVERE, null, ex);
    }

}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * Adds a Target element to the XML for use by XSL templates
 * //from ww w.  ja v a 2 s . c o  m
 * @param target
 */
@SuppressWarnings("unused")
public void addXSLTarget(String target) {
    Element root = (Element) xmlDoc.getRootElement();

    if (root == null) {
        root = xmlDoc.addElement(XML);
    }

    if (target == null) {
        target = new String();
    }
    Element targetXml = root.addElement("Target").addText(target);
}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * /*from ww  w  .j a v  a2 s  .  c om*/
 * @param userName
 * @param resultMsg
 */
@SuppressWarnings("unused")
public void constructWithResultMsg(String userName, String resultMsg) {
    Element root = xmlDoc.addElement(XML);
    if (!userName.equals("SessionDummy") && !userName.equals("SessionDummyChanged")) {
        Element loggedInAs = root.addElement("LoggedInAs").addText(userName);
    }
    if (resultMsg == null) {
        resultMsg = new String();
    }

    Element resultXml = root.addElement("Result").addText(resultMsg);

}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * /*from  w ww .ja  v  a  2s . com*/
 * @param userName
 * @param resultMsgs
 */
@SuppressWarnings("unused")
public void constructWithMultResultMsg(String userName, ArrayList<ResultMessage> resultMsgs,
        String newClientMail, String newPassword, String newPassword2, String oldPassword) {
    Element root = xmlDoc.addElement(XML);
    if (!userName.equals("SessionDummy") && !userName.equals("SessionDummyChanged")) {
        Element loggedInAs = root.addElement("LoggedInAs").addText(userName);
    }
    if (resultMsgs == null) {
        resultMsgs.add(new ResultMessage("", ""));
    }

    Element resultXml = root.addElement("Result");

    for (Iterator it = resultMsgs.iterator(); it.hasNext();) {
        ResultMessage resultMsg = (ResultMessage) it.next();
        Element resultXmlMsg = resultXml.addElement("Message");
        Element resultXmlMsgVal = resultXmlMsg.addElement("Value").addText(resultMsg.getMessage());

        Element resultXmlMsgType = resultXmlMsg.addElement("Type").addText(resultMsg.getType());

    }

    Element name = root.addElement("NewClientMail").addText(newClientMail);

    Element pass = root.addElement("NewPassword").addText(newPassword);

    Element pass2 = root.addElement("NewPassword2").addText(newPassword2);

    Element mail = root.addElement("OldPassword").addText(oldPassword);
}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * /*ww w.j a  v a  2s.  c o  m*/
 * @param userName
 * @param error
 */
@SuppressWarnings("unused")
public void constructAddClientResult(String userName, String error, String clientName, String clientMail) {
    Element root = xmlDoc.addElement(XML);
    if (!userName.equals("SessionDummy") && !userName.equals("SessionDummyChanged")) {
        Element loggedInAs = root.addElement("LoggedInAs").addText(userName);

        if (error == null) {
            error = new String();
        }

        if (clientName == null) {
            clientName = new String();
        }

        if (clientMail == null) {
            clientMail = new String();
        }

        Element errorXml = root.addElement("Result").addText(error);

        Element name = root.addElement("ClientName").addText(clientName);

        Element mail = root.addElement("ClientMail").addText(clientMail);
    }
}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * //from   w  w w. j a  v a2  s.c om
 * @param userName
 * @param url
 */
@SuppressWarnings("unused")
public void constructAddLink(String userName, String url) {
    Element root = xmlDoc.addElement(XML);
    if (!userName.equals("SessionDummy") && !userName.equals("SessionDummyChanged")) {
        Element loggedInAs = root.addElement("LoggedInAs").addText(userName);
    }
    if (url == null) {
        url = new String("");
    }

    Element urlE = root.addElement("URL").addText(url);
}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * //from   w w  w  .j  a  va2  s.  c o m
 * @param userName
 * @param linkName
 * @param linkURL
 * @param linkPermission
 * @param linkDescription
 * @param linkLabels
 * @param toolbarPosition
 * @param error
 */
@SuppressWarnings("unused")
public void constructAddLinkResult(String userName, String linkName, String linkURL, String linkPermission,
        String linkDescription, String linkLabels, String toolbarPosition, String error) {
    Element root = xmlDoc.addElement(XML);
    if (!userName.equals("SessionDummy") && !userName.equals("SessionDummyChanged")) {
        Element theLinkName = root.addElement("Name").addText(linkName);

        Element theLinkURL = root.addElement("URL").addText(linkURL);

        Element theLinkPermission = root.addElement("Permission").addText(linkPermission);

        Element theLinkDescription = root.addElement("Description").addText(linkDescription);

        Element theLinkLabels = root.addElement("Labels").addText(linkLabels);

        Element loggedInAs = root.addElement("LoggedInAs").addText(userName);

        Element errorXml = root.addElement("Result").addText(error);

        Element theToolbarPosition = root.addElement("ToolbarPosition").addText(toolbarPosition);
    }
}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * /*from www. j  a  va  2 s . com*/
 * @param userName
 * @param error
 */
@SuppressWarnings("unused")
public void constructAddLinkResult(String userName, String error) {
    Element root = xmlDoc.addElement(XML);
    if (!userName.equals("SessionDummy") && !userName.equals("SessionDummyChanged")) {
        Element loggedInAs = root.addElement("LoggedInAs").addText(userName);

        Element errorXml = root.addElement("Result").addText(error);
    }
}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * /* w w w . j a v a 2s .  com*/
 * @param userName
 * @param target
 * @param error
 */
@SuppressWarnings("unused")
public void constructImportResult(String userName, String target, String error) {
    if (!userName.equals("SessionDummy") && !userName.equals("SessionDummyChanged")) {
        Element root = xmlDoc.addElement(XML);

        Element loggedInAs = root.addElement("LoggedInAs").addText(userName);

        Element errorXml = root.addElement("Result").addText(error);

        Element targetXml = root.addElement("Target").addText(target);
    }
}

From source file:bookmarks.BookmarkXML.java

License:Open Source License

/**
 * /*from  ww w.  ja  v  a2  s. c om*/
 * @param userName
 * @param bookmark
 */
public void constructRandom(String userName, LinkNameUrlObject random) {
    Element root = xmlDoc.addElement(XML);
    root.addElement("LoggedInAs").addText(userName);
    root.addElement("Result").addText("SUCCESS");
    Element bookmarkList = root.addElement("BookmarkList");
    Element bookmark = bookmarkList.addElement("Bookmark");
    bookmark.addElement("Title").addText(random.getLinkName());
    bookmark.addElement("URL").addText(random.getLinkURL());
    bookmark.addElement("EncodedLink").addText(Utilities.encodeURIComponent(random.getLinkURL()));
    bookmark.addElement("EncodedName").addText(Utilities.encodeURIComponent(random.getLinkName()));
    if (!userName.equals("")) {
        bookmark.addElement("LoggedIn");
    }
}