List of usage examples for org.apache.poi.ss.usermodel Cell getDateCellValue
Date getDateCellValue();
From source file:org.nuclos.server.common.ooxml.ExcelReader.java
License:Open Source License
private static Object getCellValue(Cell cell, int cellType) { switch (cellType) { case Cell.CELL_TYPE_BLANK: return null; case Cell.CELL_TYPE_BOOLEAN: return cell.getBooleanCellValue(); case Cell.CELL_TYPE_NUMERIC: if (DateUtil.isCellDateFormatted(cell)) { return cell.getDateCellValue(); } else {/*from www. ja v a 2 s .c o m*/ return cell.getNumericCellValue(); } case Cell.CELL_TYPE_STRING: return cell.getStringCellValue(); case Cell.CELL_TYPE_ERROR: return FormulaError.forInt(cell.getErrorCellValue()).getString(); case Cell.CELL_TYPE_FORMULA: return cell.getCellFormula(); default: throw new IllegalArgumentException("Unknown POI cell type " + cellType); } }
From source file:org.obiba.onyx.core.io.support.ExcelReaderSupport.java
License:Open Source License
public static Date getDateValue(HSSFFormulaEvaluator evaluator, Cell cell) { Date rvalue = null;//from w w w .j av a 2s .c o m if (cell.getCellType() == Cell.CELL_TYPE_FORMULA) { CellValue cellValue = evaluator.evaluate(cell); if (cellValue.getCellType() == Cell.CELL_TYPE_NUMERIC) { rvalue = cell.getDateCellValue(); } } else { if (cell.getCellType() == Cell.CELL_TYPE_NUMERIC) { rvalue = cell.getDateCellValue(); } } if (rvalue == null) { throw new IllegalArgumentException("Unexpected cell type"); } return rvalue; }
From source file:org.opencities.berlin.uploaddata.service.Worker.java
private HashMap<String, String> handleDate(HashMap<String, String> map, ArrayList<String> strings, Cell cell) { String val; SimpleDateFormat form = new SimpleDateFormat("yyyy-MM-dd"); val = form.format(cell.getDateCellValue()); if (strings.get(cell.getColumnIndex()).startsWith("extras:")) { String[] tmp = strings.get(cell.getColumnIndex()).split(":"); parseExtras(tmp[1], val); } else/* w ww .j a va2 s. c o m*/ map.put(strings.get(cell.getColumnIndex()), "\"" + val + "\""); return map; }
From source file:org.openelis.bean.QcChartReport1Bean.java
License:Open Source License
/** * Keeps track of the maximum number of characters in each column of the * spreadsheet; if "cell" has more characters than the number in "maxChars" * for the cell's column, the number in "maxChars" is updated * //from ww w . j av a 2s . c o m * @param cell * a cell in a row in the spreadsheet * @param maxChars * the list containing the maximum number of characters in each * column of the spreadsheet */ private void setMaxChars(Cell cell, ArrayList<Integer> maxChars) { int col, chars; String val; col = cell.getColumnIndex(); while (col > maxChars.size() - 1) maxChars.add(0); if (cell.getCellType() == Cell.CELL_TYPE_NUMERIC) { if (DateUtil.isCellDateFormatted(cell)) val = ReportUtil.toString(cell.getDateCellValue(), Messages.get().dateTimePattern()); else val = Double.toString(cell.getNumericCellValue()); } else { val = cell.getStringCellValue(); } chars = !DataBaseUtil.isEmpty(val) ? val.length() : 0; maxChars.set(col, Math.max(chars, maxChars.get(col))); }
From source file:org.openelis.bean.WorksheetExcelHelperBean.java
License:Open Source License
private Object getCellValue(Cell cell) { Object value;/*from www .j a va 2 s . co m*/ FormulaEvaluator eval; value = null; if (cell != null) { switch (cell.getCellType()) { case Cell.CELL_TYPE_FORMULA: eval = cell.getSheet().getWorkbook().getCreationHelper().createFormulaEvaluator(); switch (eval.evaluateFormulaCell(cell)) { case Cell.CELL_TYPE_NUMERIC: if (DateUtil.isCellDateFormatted(cell)) { value = new Datetime(Datetime.YEAR, Datetime.MINUTE, cell.getDateCellValue()); } else { cell.setCellType(Cell.CELL_TYPE_STRING); value = cell.getStringCellValue(); if (((String) value).trim().length() == 0) value = null; } break; case Cell.CELL_TYPE_STRING: value = cell.getStringCellValue(); if (((String) value).trim().length() == 0) value = null; break; } break; case Cell.CELL_TYPE_NUMERIC: if (DateUtil.isCellDateFormatted(cell)) { value = new Datetime(Datetime.YEAR, Datetime.MINUTE, cell.getDateCellValue()); } else { cell.setCellType(Cell.CELL_TYPE_STRING); value = cell.getStringCellValue(); if (((String) value).trim().length() == 0) value = null; } break; case Cell.CELL_TYPE_STRING: value = cell.getStringCellValue(); if (((String) value).trim().length() == 0) value = null; break; } } return value; }
From source file:org.openmrs.module.kenyaemr.fragment.controller.patient.ImportPatientsListFragmentController.java
License:Open Source License
@SuppressWarnings("deprecation") public Object submit(HttpServletRequest request) throws Exception { // Constant values used across all the code MultipartHttpServletRequest multipartRequest = (MultipartHttpServletRequest) request; MultipartFile multipartModuleFile = multipartRequest.getFile("upload"); InputStream inputStream = multipartModuleFile.getInputStream(); Workbook workbook = new XSSFWorkbook(inputStream); Sheet firstSheet = workbook.getSheetAt(0); Iterator<Row> iterator = firstSheet.iterator(); int rowCount = 0; while (iterator.hasNext()) { Row nextRow = iterator.next();//from w w w . j a va 2s. c om Iterator<Cell> cellIterator = nextRow.cellIterator(); try { if (rowCount > 0) { ArrayList<String> legacyData = new ArrayList<String>(); int columnCount = 0; while (cellIterator.hasNext() && columnCount < 31) { Cell cell = cellIterator.next(); switch (cell.getCellType()) { case Cell.CELL_TYPE_STRING: legacyData.add(cell.getColumnIndex(), cell.getStringCellValue().trim()); break; case Cell.CELL_TYPE_NUMERIC: if (HSSFDateUtil.isCellDateFormatted(cell)) { legacyData.add(cell.getColumnIndex(), String.valueOf(cell.getDateCellValue())); } else { legacyData.add(cell.getColumnIndex(), NumberToTextConverter.toText(cell.getNumericCellValue())); } break; case Cell.CELL_TYPE_BLANK: legacyData.add(cell.getColumnIndex(), null); break; } columnCount++; } int i = 0; for (String s : legacyData) { i++; } /* * Start Patient Creation */ try { if (legacyData.get(0) != null) { Patient toSave = new Patient(); // Creating a new // patient // and // person PersonName personName = new PersonName(); PersonAddress personAddress = new PersonAddress(); Location location; SimpleDateFormat formatter = new SimpleDateFormat("E MMM dd HH:mm:ss Z yyyy"); Date dateBith = new Date(); try { dateBith = (Date) formatter.parse(legacyData.get(2)); } catch (ParseException e) { e.printStackTrace(); } toSave.setGender(legacyData.get(3)); toSave.setBirthdate(dateBith); toSave.setBirthdateEstimated(false); toSave.setDead(false); /* * toSave.setDeathDate(deathDate); * toSave.setCauseOfDeath(dead ? Dictionary * .getConcept(CAUSE_OF_DEATH_PLACEHOLDER) : null); */ if (legacyData.get(1) != "") { personName.setGivenName(legacyData.get(1)); personName.setFamilyName("(NULL)"); toSave.addName(personName); } // toSave. personAddress.setAddress1(legacyData.get(9)); personAddress.setCountyDistrict(legacyData.get(10)); toSave.addAddress(personAddress); PatientWrapper wrapper = new PatientWrapper(toSave); wrapper.getPerson().setTelephoneContact(legacyData.get(8)); location = Context.getService(KenyaEmrService.class).getDefaultLocation(); if (legacyData.get(4) != null) { wrapper.setPreArtRegistrationNumber(legacyData.get(4), location); } if (legacyData.get(6) != null) { wrapper.setArtRegistrationNumber(legacyData.get(6), location); } if (legacyData.get(5) != null) { wrapper.setNapArtRegistrationNumber(legacyData.get(5), location); } // Algorithm to generate system generated patient // Identifier Calendar now = Calendar.getInstance(); String shortName = Context.getAdministrationService() .getGlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_PATIENT_IDENTIFIER_PREFIX); String noCheck = shortName + String.valueOf(now.get(Calendar.YEAR)).substring(2, 4) + String.valueOf(now.get(Calendar.MONTH) + 1) + String.valueOf(now.get(Calendar.DATE)) + String.valueOf(now.get(Calendar.HOUR)) + String.valueOf(now.get(Calendar.MINUTE)) + String.valueOf(now.get(Calendar.SECOND)) + String.valueOf(new Random().nextInt(9999 - 999 + 1)); wrapper.setSystemPatientId(noCheck + "-" + generateCheckdigit(noCheck), location); wrapper.setNextOfKinName(legacyData.get(11)); wrapper.setNextOfKinContact(legacyData.get(12)); if (legacyData.get(13) != null) { wrapper.setPreviousHivTestStatus("Yes"); wrapper.setPreviousHivTestPlace(legacyData.get(14)); Date capturedTestDate = new Date(); try { capturedTestDate = formatter.parse(legacyData.get(13)); } catch (ParseException e) { e.printStackTrace(); } DateFormat testDate = new SimpleDateFormat("dd-MMMM-yyyy"); wrapper.setPreviousHivTestDate(testDate.format(capturedTestDate)); } else { wrapper.setPreviousHivTestStatus("No"); } wrapper.setPreviousClinicName(legacyData.get(16)); // Make sure everyone gets an OpenMRS ID PatientIdentifierType openmrsIdType = MetadataUtils.existing( PatientIdentifierType.class, CommonMetadata._PatientIdentifierType.OPENMRS_ID); PatientIdentifier openmrsId = toSave.getPatientIdentifier(openmrsIdType); if (openmrsId == null) { String generated = Context.getService(IdentifierSourceService.class) .generateIdentifier(openmrsIdType, "Registration"); openmrsId = new PatientIdentifier(generated, openmrsIdType, location); toSave.addIdentifier(openmrsId); if (!toSave.getPatientIdentifier().isPreferred()) { openmrsId.setPreferred(true); } } Patient ret = Context.getPatientService().savePatient(toSave); // Explicitly save all identifier objects including // voided for (PatientIdentifier identifier : toSave.getIdentifiers()) { Context.getPatientService().savePatientIdentifier(identifier); } /* * End Patient Creation */ /** ** Start : Visit, Encounter and Program creation for * Patient entered as Legacy Data Visit start date **/ Date curDate = new Date(); Date dateVisit = null; try { dateVisit = formatter.parse(legacyData.get(18)); } catch (ParseException e) { e.printStackTrace(); } DateFormat visitDateInExcel = new SimpleDateFormat("dd-MMM-yyyy"); String dateCheck = visitDateInExcel.format(dateVisit); SimpleDateFormat mysqlDateTimeFormatter = new SimpleDateFormat("dd-MMM-yy HH:mm:ss"); if (legacyData.get(18) != null) { try { dateVisit = mysqlDateTimeFormatter.parse(dateCheck + " " + curDate.getHours() + ":" + curDate.getMinutes() + ":" + curDate.getSeconds()); } catch (ParseException e) { dateVisit = curDate; // TODO Auto-generated catch block e.printStackTrace(); } } Visit visit = new Visit(); visit.setPatient(ret); visit.setStartDatetime(dateVisit); visit.setVisitType( MetadataUtils.existing(VisitType.class, CommonMetadata._VisitType.OUTPATIENT)); visit.setLocation(Context.getService(KenyaEmrService.class).getDefaultLocation()); VisitAttributeType attrType = Context.getService(VisitService.class) .getVisitAttributeTypeByUuid(CommonMetadata._VisitAttributeType.NEW_PATIENT); if (attrType != null) { VisitAttribute attr = new VisitAttribute(); attr.setAttributeType(attrType); attr.setVisit(visit); attr.setDateCreated(curDate); attr.setValue(true); visit.addAttribute(attr); } Visit visitSave = Context.getVisitService().saveVisit(visit); // With value text and Date if (legacyData.get(15) != null) { Date dateTransfer = null; if (legacyData.get(17) != null) { try { dateTransfer = formatter.parse(legacyData.get(17)); } catch (ParseException e) { e.printStackTrace(); } } Concept enrollementConcept = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(15))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.METHOD_OF_ENROLLMENT), enrollementConcept, "", dateTransfer, null, visitSave); } if (legacyData.get(7) != null) { Concept ingoConcept = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(7))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.INGO_NAME), ingoConcept, "", null, null, visitSave); } EncounterType hivEnrollEncType = MetadataUtils.existing(EncounterType.class, HivMetadata._EncounterType.HIV_ENROLLMENT); EncounterType registrationEncType = MetadataUtils.existing(EncounterType.class, CommonMetadata._EncounterType.REGISTRATION); Encounter hivEnrollmentEncounter = new Encounter(); hivEnrollmentEncounter.setEncounterType(hivEnrollEncType); hivEnrollmentEncounter.setPatient(ret); hivEnrollmentEncounter .setLocation(Context.getService(KenyaEmrService.class).getDefaultLocation()); hivEnrollmentEncounter.setDateCreated(curDate); hivEnrollmentEncounter.setEncounterDatetime(dateVisit); hivEnrollmentEncounter .setForm(MetadataUtils.existing(Form.class, HivMetadata._Form.HIV_ENROLLMENT)); hivEnrollmentEncounter.setVisit(visitSave); hivEnrollmentEncounter.setVoided(false); Encounter enHivNew = Context.getEncounterService() .saveEncounter(hivEnrollmentEncounter); PatientProgram patientProgram = new PatientProgram(); patientProgram.setPatient(ret); patientProgram .setProgram(MetadataUtils.existing(Program.class, HivMetadata._Program.HIV)); patientProgram.setDateEnrolled(enHivNew.getEncounterDatetime()); patientProgram.setDateCreated(curDate); Context.getProgramWorkflowService().savePatientProgram(patientProgram); Encounter personalEncounter = new Encounter(); personalEncounter.setEncounterType(hivEnrollEncType); personalEncounter.setPatient(ret); personalEncounter.setDateCreated(curDate); personalEncounter.setEncounterDatetime(dateVisit); personalEncounter .setLocation(Context.getService(KenyaEmrService.class).getDefaultLocation()); personalEncounter.setForm( MetadataUtils.existing(Form.class, Metadata.Form.HIV_PERSONAL_HISTORY)); personalEncounter.setVisit(visitSave); personalEncounter.setVoided(false); Encounter enpersonalrecordresultNew = Context.getEncounterService() .saveEncounter(personalEncounter); if (legacyData.get(19) != null) { Concept literate = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(19))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.LITERATE), literate, "", null, null, enpersonalrecordresultNew, null, visitSave); } if (legacyData.get(21) != null) { String value = legacyData.get(21); String[] valueList = value.split("\\s*,\\s*"); for (String riskname : valueList) { Concept riskConcept = Context.getConceptService().getConcept(riskname); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.HIV_RISK_FACTOR), riskConcept, "", null, null, enpersonalrecordresultNew, null, visitSave); } } if (legacyData.get(22) != null) { Concept idssubstituion = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(22))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.IDU_PERSONAL_HISTORY), idssubstituion, "", null, null, enpersonalrecordresultNew, null, visitSave); } if (legacyData.get(23) != null) { Concept idssubstituionvalue = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(23))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.IDU_NAME_PERSONAL_HISTORY), idssubstituionvalue, "", null, null, enpersonalrecordresultNew, null, visitSave); } if (legacyData.get(29) != null) { Concept employedvalue = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(29))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.EMPLOYED), employedvalue, "", null, null, enpersonalrecordresultNew, null, visitSave); } if (legacyData.get(30) != null) { Concept alcoholicvalue = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(30))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.ALCOHOLIC_TYPE), alcoholicvalue, "", null, null, enpersonalrecordresultNew, null, visitSave); } Encounter familyEncounter = new Encounter(); familyEncounter.setEncounterType(registrationEncType); familyEncounter.setPatient(ret); familyEncounter.setDateCreated(curDate); familyEncounter.setEncounterDatetime(dateVisit); familyEncounter .setLocation(Context.getService(KenyaEmrService.class).getDefaultLocation()); familyEncounter .setForm(MetadataUtils.existing(Form.class, Metadata.Form.HIV_FAMILY_HISTORY)); familyEncounter.setVisit(visitSave); familyEncounter.setVoided(false); Encounter enfamilyrecordresultNew = Context.getEncounterService() .saveEncounter(familyEncounter); if (legacyData.get(20) != null) { Concept martalstatus = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(20))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.CIVIL_STATUS), martalstatus, "", null, null, enfamilyrecordresultNew, null, visitSave); } Encounter drugEncounter = new Encounter(); drugEncounter.setEncounterType(hivEnrollEncType); drugEncounter.setPatient(ret); drugEncounter.setDateCreated(curDate); drugEncounter.setEncounterDatetime(dateVisit); drugEncounter .setLocation(Context.getService(KenyaEmrService.class).getDefaultLocation()); drugEncounter .setForm(MetadataUtils.existing(Form.class, Metadata.Form.HIV_DRUG_HISTORY)); drugEncounter.setVisit(visitSave); drugEncounter.setVoided(false); Encounter endrugrecordresultNew = Context.getEncounterService() .saveEncounter(drugEncounter); if (legacyData.get(24) != null) { Concept drughistoryart = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(24))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.DRUG_HISTORY_ART_RECEIVED), drughistoryart, "", null, null, endrugrecordresultNew, null, visitSave); } if (legacyData.get(25) != null) { Concept drughistoryarttype = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(25))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.DRUG_HISTORY_ART_RECEIVED_TYPE), drughistoryarttype, "", null, null, endrugrecordresultNew, null, visitSave); } if (legacyData.get(26) != null && legacyData.get(27) != null && legacyData.get(28) != null) { boolean value = false; Obs drugtreatmentGroup = new Obs(); drugtreatmentGroup.setPerson(ret); drugtreatmentGroup.setConcept(Dictionary.getConcept(Dictionary.DRUG_HISTORY_GROUP)); drugtreatmentGroup.setObsDatetime(endrugrecordresultNew.getEncounterDatetime()); // Added value coded as per default obs object // format. //drugtreatmentGroup.setValueCoded(null); // drugtreatmentGroup.setValueText(text); drugtreatmentGroup.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); drugtreatmentGroup.setEncounter(endrugrecordresultNew); drugtreatmentGroup.setValueBoolean(value); Obs drugtreat = Context.getObsService().saveObs(drugtreatmentGroup, "KenyaEMR History Details"); if (legacyData.get(26) != null) { Concept place = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(26))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.DRUG_HISTORY_ART_RECEIVED_PLACE), place, "", null, null, endrugrecordresultNew, drugtreat, visitSave); } if (legacyData.get(27) != null) { Concept drugarv = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(27))); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.DRUG_REGIMEN_DRUG_HISTORY), drugarv, "", null, null, endrugrecordresultNew, drugtreat, visitSave); } if (legacyData.get(28) != null) { Double dur = 0.0; Integer durationreslt = 0; durationreslt = Integer.parseInt(legacyData.get(28)); dur = durationreslt.doubleValue(); handleOncePerPatientObs(ret, Dictionary.getConcept(Dictionary.DRUG_DURATION), null, null, null, dur, endrugrecordresultNew, drugtreat, visitSave); } } /* * End : Visit, Encounter and Program creation for * Patient entered as Legacy Data */ } } catch (IndexOutOfBoundsException e) { break; } } } catch (IndexOutOfBoundsException e) { break; } rowCount++; } int noOfSheets = workbook.getNumberOfSheets(); if (noOfSheets > 1) { Sheet secondSheet = workbook.getSheetAt(1); Iterator<Row> iteratorSecond = secondSheet.iterator(); int rowCountVisit = 0; while (iteratorSecond.hasNext()) { Row nextRow = iteratorSecond.next(); Iterator<Cell> cellIterator = nextRow.cellIterator(); try { if (rowCountVisit > 0) { ArrayList<String> legacyData = new ArrayList<String>(); int columnCount = 0; while (cellIterator.hasNext() && columnCount < 44) { Cell cell = cellIterator.next(); switch (cell.getCellType()) { case Cell.CELL_TYPE_STRING: legacyData.add(cell.getColumnIndex(), cell.getStringCellValue().trim()); break; case Cell.CELL_TYPE_NUMERIC: if (HSSFDateUtil.isCellDateFormatted(cell)) { legacyData.add(cell.getColumnIndex(), String.valueOf(cell.getDateCellValue())); } else { legacyData.add(cell.getColumnIndex(), NumberToTextConverter.toText(cell.getNumericCellValue())); } break; case Cell.CELL_TYPE_BLANK: legacyData.add(cell.getColumnIndex(), ""); break; } columnCount++; } int i = 0; for (String s : legacyData) { i++; } Person person = null; Patient patient = null; PatientWrapper wrapper = null; int count = 0; Location location; location = Context.getService(KenyaEmrService.class).getDefaultLocation(); if (legacyData.get(3) != null && legacyData.get(3) != "") { try { if (!legacyData.get(0).isEmpty()) { PatientIdentifierType pt = Context.getPatientService() .getPatientIdentifierTypeByUuid("d59d0f67-4a05-4e41-bfad-342da68feb6f"); List<PatientIdentifier> patList = Context.getPatientService() .getPatientIdentifiers(legacyData.get(0).toString(), pt); for (PatientIdentifier p : patList) { patient = Context.getPatientService() .getPatient(p.getPatient().getPatientId()); wrapper = new PatientWrapper(patient); person = Context.getPersonService().getPerson(patient); } } else if (!legacyData.get(1).isEmpty()) { PatientIdentifierType pt = Context.getPatientService() .getPatientIdentifierTypeByUuid("3e5493e8-e76e-4d3f-a166-9a88b40747fa"); List<PatientIdentifier> patList = Context.getPatientService() .getPatientIdentifiers(legacyData.get(1).toString(), pt); for (PatientIdentifier p : patList) { patient = Context.getPatientService() .getPatient(p.getPatient().getPatientId()); wrapper = new PatientWrapper(patient); person = Context.getPersonService().getPerson(patient); } } else if (!legacyData.get(2).isEmpty()) { PatientIdentifierType pt = Context.getPatientService() .getPatientIdentifierTypeByUuid("9e10c5d6-a58c-4236-8b65-b6b932beff1a"); List<PatientIdentifier> patList = Context.getPatientService() .getPatientIdentifiers(legacyData.get(2).toString(), pt); for (PatientIdentifier p : patList) { patient = Context.getPatientService() .getPatient(p.getPatient().getPatientId()); wrapper = new PatientWrapper(patient); person = Context.getPersonService().getPerson(patient); } } else { break; } SimpleDateFormat formatter = new SimpleDateFormat("E MMM dd HH:mm:ss Z yyyy"); Date curDate = new Date(); Date dateVisit = null; try { if (legacyData.get(3) != null && legacyData.get(3) != "") { dateVisit = formatter.parse(legacyData.get(3)); } } catch (ParseException e) { e.printStackTrace(); } DateFormat visitDateInExcel = new SimpleDateFormat("dd-MMM-yyyy"); String dateCheck = ""; SimpleDateFormat mysqlDateTimeFormatter = new SimpleDateFormat( "dd-MMM-yy HH:mm:ss"); if (legacyData.get(3) != null && legacyData.get(3) != "") { Date curDatenew = new Date(); dateCheck = visitDateInExcel.format(dateVisit); try { dateVisit = mysqlDateTimeFormatter .parse(dateCheck + " " + curDatenew.getHours() + ":" + curDatenew.getMinutes() + ":" + curDatenew.getSeconds()); } catch (ParseException e) { dateVisit = curDatenew; e.printStackTrace(); } } List<Visit> visits = Context.getVisitService().getActiveVisitsByPatient(patient); Visit v = new Visit(); if (visits.isEmpty()) { Visit visit = new Visit(); visit.setPatient(patient); visit.setStartDatetime(dateVisit); visit.setVisitType(MetadataUtils.existing(VisitType.class, CommonMetadata._VisitType.OUTPATIENT)); visit.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); if (person.getDead() == false) { v = Context.getVisitService().saveVisit(visit); } } else { for (Visit vLoop : visits) { v = vLoop; } } if (v.getId() != null) { EncounterType artEnrollEncType = MetadataUtils.existing(EncounterType.class, ArtMetadata._EncounterType.INITIATE_ART); Encounter artEncounter = new Encounter(); artEncounter.setEncounterType(artEnrollEncType); artEncounter.setPatient(patient); artEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); artEncounter.setDateCreated(curDate); artEncounter.setEncounterDatetime(dateVisit); artEncounter.setForm( MetadataUtils.existing(Form.class, ArtMetadata._Form.INITIATE_ART)); artEncounter.setVisit(v); artEncounter.setVoided(false); if (!legacyData.get(9).isEmpty()) { Encounter enartNew = Context.getEncounterService() .saveEncounter(artEncounter); } PatientProgram pp = new PatientProgram(); if (!legacyData.get(9).isEmpty()) { pp.setPatient(patient); pp.setProgram( MetadataUtils.existing(Program.class, ArtMetadata._Program.ART)); Date artStartDate = null; Date curDatenew = new Date(); try { artStartDate = (Date) formatter.parse(legacyData.get(9)); dateCheck = visitDateInExcel.format(artStartDate); artStartDate = mysqlDateTimeFormatter.parse(dateCheck + " " + curDatenew.getHours() + ":" + curDatenew.getMinutes() + ":" + curDatenew.getSeconds()); pp.setDateEnrolled(artStartDate); } catch (ParseException e) { e.printStackTrace(); } if (pp.getDateEnrolled() != null && pp.getDateCompleted() == null) { PatientProgram program = Context.getProgramWorkflowService() .savePatientProgram(pp); } } /* * Changes code */ String reg = ""; if (!legacyData.get(4).isEmpty()) { Concept regimenConcept = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(4))); reg = reg.concat(regimenConcept.getName().toString()); KenyaEmrService kes = (KenyaEmrService) Context .getService(KenyaEmrService.class); List<DrugOrderProcessed> dopp = kes.getDrugOrderProcessedByPatient(patient); // Created drug order processed DrugOrderProcessed orderprocess = new DrugOrderProcessed(); orderprocess.setPatient(patient); orderprocess.setDrugRegimen(reg); orderprocess.setCreatedDate(dateVisit); orderprocess.setStartDate(dateVisit); orderprocess.setVisit(v); orderprocess.setRoute(Context.getConceptService() .getConceptByUuid("160240AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA")); Integer tablet = 0; if (legacyData.get(4).equals("163494") || legacyData.get(4).equals("163495") || legacyData.get(4).equals("163496") || legacyData.get(4).equals("162959") || legacyData.get(4).equals("163503") || legacyData.get(4).equals("163505") || legacyData.get(4).equals("163506") || legacyData.get(4).equals(" 163507") || legacyData.get(4).equals("163508") || legacyData.get(4).equals("163510")) { orderprocess.setNoOfTablet(1); tablet = Integer.parseInt(legacyData.get(6)); } else { tablet = Integer.parseInt(legacyData.get(6)) * 2; orderprocess.setNoOfTablet(2); } if (!legacyData.get(6).isEmpty()) { orderprocess.setDurationPreProcess(Integer.parseInt(legacyData.get(6))); orderprocess.setQuantityPostProcess(tablet); orderprocess.setProcessedStatus(true); try { Date curDat = new Date(); dateVisit = mysqlDateTimeFormatter .parse(dateCheck + " " + curDat.getHours() + ":" + curDat.getMinutes() + ":" + curDat.getSeconds()); orderprocess.setProcessedDate(dateVisit); } catch (ParseException e) { e.printStackTrace(); } } if (!legacyData.get(5).isEmpty()) { orderprocess.setDose(legacyData.get(5)); orderprocess.setDoseRegimen(legacyData.get(5)); } String cahngeRegimenType = ""; if (patient.getAge() > 14) { for (String firstline : firstlineConcept) { if (legacyData.get(4).equals(firstline)) { orderprocess .setTypeOfRegimen("First line Anti-retoviral drugs"); cahngeRegimenType = "First line Anti-retoviral drugs"; } } for (String secndline : secondlineConcept) { if (legacyData.get(4).equals(secndline)) { orderprocess.setTypeOfRegimen("Second line ART"); cahngeRegimenType = "Second line ART"; } } for (String thirdline : thirdlineConcept) { if (legacyData.get(4).equals(thirdline)) { orderprocess.setTypeOfRegimen("HIV/HBV co-infection"); cahngeRegimenType = "HIV/HBV co-infection"; } } } else { for (String child : childArvConcept) { if (legacyData.get(4).equals(child)) { orderprocess.setTypeOfRegimen("ARV drugs for child"); cahngeRegimenType = "ARV drugs for child"; } } } if (dopp.size() == 0) { orderprocess.setRegimenChangeType("Start"); // Encounter Created EncounterType regEnrollEncType = MetadataUtils.existing( EncounterType.class, CommonMetadata._EncounterType.REGIMEN_ORDER); Encounter regEncounter = new Encounter(); regEncounter.setEncounterType(regEnrollEncType); regEncounter.setPatient(patient); regEncounter.setLocation(Context.getLocationService() .getLocationByUuid("8d6c993e-c2cc-11de-8d13-0010c6dffd0f")); regEncounter.setDateCreated(curDate); regEncounter.setEncounterDatetime(dateVisit); regEncounter.setVisit(v); regEncounter.setVoided(false); // Save encounter Encounter enregNew = Context.getEncounterService() .saveEncounter(regEncounter); // Create order Order ordersave = new Order(); // Create Drug order DrugOrder dod = new DrugOrder(); dod.setOrderType(Context.getOrderService().getOrderType(2)); dod.setConcept(Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(4)))); dod.setEncounter(enregNew); dod.setStartDate(dateVisit); dod.setDateCreated(curDate); dod.setPatient(patient); dod.setUnits("tab"); if (legacyData.get(4).equals("163494") || legacyData.get(4).equals("163495") || legacyData.get(4).equals("163496") || legacyData.get(4).equals("162959") || legacyData.get(4).equals("163503") || legacyData.get(4).equals("163505") || legacyData.get(4).equals("163506") || legacyData.get(4).equals(" 163507") || legacyData.get(4).equals("163508") || legacyData.get(4).equals("163510")) { dod.setFrequency("od"); } else { dod.setFrequency("bd"); } // /Save drug order ordersave = Context.getOrderService().saveOrder(dod); orderprocess.setDrugOrder(dod); } if (dopp.size() > 0) { DrugOrderProcessed dd = dopp.get(dopp.size() - 1); // for (DrugOrderProcessed dd : // dopp) { if (dd.getDrugRegimen().equals(reg) && !legacyData.get(5).isEmpty() && dd.getDoseRegimen().equals(legacyData.get(5)) && dd.getTypeOfRegimen().equals(cahngeRegimenType)) { orderprocess.setRegimenChangeType("Continue"); orderprocess.setDrugOrder(dd.getDrugOrder()); } else { if (dd.getTypeOfRegimen().equals(cahngeRegimenType)) { orderprocess.setRegimenChangeType("Substitue"); } else if (dd.getTypeOfRegimen().equals(cahngeRegimenType)) { orderprocess.setRegimenChangeType("Switch"); } // Encounter Created EncounterType regEnrollEncType = MetadataUtils.existing( EncounterType.class, CommonMetadata._EncounterType.REGIMEN_ORDER); Encounter regEncounter = new Encounter(); regEncounter.setEncounterType(regEnrollEncType); regEncounter.setPatient(patient); regEncounter.setLocation(Context.getLocationService() .getLocationByUuid("8d6c993e-c2cc-11de-8d13-0010c6dffd0f")); regEncounter.setDateCreated(curDate); regEncounter.setEncounterDatetime(dateVisit); regEncounter.setVisit(v); regEncounter.setVoided(false); // Save encounter Encounter enregNew = Context.getEncounterService() .saveEncounter(regEncounter); // Create order Order ordersave = new Order(); // Create Drug order DrugOrder dod = new DrugOrder(); dod.setOrderType(Context.getOrderService().getOrderType(2)); dod.setConcept(Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(4)))); dod.setEncounter(enregNew); dod.setStartDate(dateVisit); dod.setDateCreated(curDate); dod.setPatient(patient); dod.setUnits("tab"); if (legacyData.get(4).equals("163494") || legacyData.get(4).equals("163495") || legacyData.get(4).equals("163496") || legacyData.get(4).equals("162959") || legacyData.get(4).equals("163503") || legacyData.get(4).equals("163505") || legacyData.get(4).equals("163506") || legacyData.get(4).equals(" 163507") || legacyData.get(4).equals("163508") || legacyData.get(4).equals("163510")) { dod.setFrequency("od"); } else { dod.setFrequency("bd"); } // /Save drug order ordersave = Context.getOrderService().saveOrder(dod); orderprocess.setDrugOrder(dod); } } kes.saveDrugOrderProcessed(orderprocess); Order oo = new Order(); DrugOrderProcessed drugoo = new DrugOrderProcessed(); for (DrugOrderProcessed ooo : dopp) { if (!legacyData.get(36).isEmpty()) { Date discontinuedDate = new Date(); discontinuedDate = (Date) formatter.parse(legacyData.get(36)); String dtechk = visitDateInExcel.format(discontinuedDate); try { Date curDat = new Date(); List<Visit> visitdrug = Context.getVisitService() .getVisitsByPatient(patient); for (Visit visdr : visitdrug) { if (visdr.getStopDatetime() != null) { if (drugoo.getDiscontinuedDate() == null) { discontinuedDate = mysqlDateTimeFormatter .parse(dtechk + " " + curDat.getHours() + ":" + curDat.getMinutes() + ":" + curDat.getSeconds()); drugoo.setDiscontinuedDate(dateVisit); break; } } } } catch (ParseException e) { e.printStackTrace(); } } if (!legacyData.get(35).isEmpty()) { List<Visit> visitdrug = Context.getVisitService() .getVisitsByPatient(patient); Concept discontinuedReason = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(35))); for (Visit visdr : visitdrug) { Order orderPrevious = Context.getOrderService() .getOrder(ooo.getDrugOrder().getOrderId()); if (visdr.getStopDatetime() != null) { if (orderPrevious.getDiscontinuedReason() == null) { if (!ooo.getDrugRegimen() .equals(drugoo.getDrugRegimen())) { drugoo.setDiscontinuedReason(discontinuedReason); orderPrevious.setDiscontinued(true); orderPrevious .setDiscontinuedBy(Context.getUserService() .getUserByUsername("admin")); orderPrevious .setDiscontinuedReason(discontinuedReason); orderPrevious.setDiscontinuedDate(dateVisit); Context.getOrderService().saveOrder(orderPrevious); break; } } } } } drugoo = ooo; kes.saveDrugOrderProcessed(drugoo); } } EncounterType labEnrollEncType = MetadataUtils.existing(EncounterType.class, CommonMetadata._EncounterType.LAB_ORDERS); Encounter labEncounter = new Encounter(); labEncounter.setEncounterType(labEnrollEncType); labEncounter.setPatient(patient); labEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); labEncounter.setDateCreated(curDate); labEncounter.setEncounterDatetime(dateVisit); labEncounter.setForm( MetadataUtils.existing(Form.class, CommonMetadata._Form.LAB_ORDERS)); labEncounter.setVisit(v); labEncounter.setVoided(false); Encounter enlabNew = Context.getEncounterService().saveEncounter(labEncounter); if (!legacyData.get(7).isEmpty()) { Concept labOrder = Dictionary.getConcept(Dictionary.CD4_COUNT); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.lABORATORY_ORDER), labOrder, "", null, null, enlabNew, null, v); } if (!legacyData.get(39).isEmpty()) { Concept labOrder = Context.getConceptService() .getConceptByUuid("122858AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.lABORATORY_ORDER), labOrder, "", null, null, enlabNew, null, v); } if (!legacyData.get(38).isEmpty()) { Concept labOrder = Context.getConceptService() .getConceptByUuid("654AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.lABORATORY_ORDER), labOrder, "", null, null, enlabNew, null, v); } if (!legacyData.get(8).isEmpty()) { Concept labviralOrder = Dictionary.getConcept(Dictionary.HIV_VIRAL_LOAD); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.lABORATORY_ORDER), labviralOrder, "", null, null, enlabNew, null, v); } if (!legacyData.get(37).isEmpty()) { Concept labhaemoOrder = Context.getConceptService() .getConceptByUuid("1019AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.lABORATORY_ORDER), labhaemoOrder, "", null, null, enlabNew, null, v); } if (!legacyData.get(40).isEmpty()) { Concept labcreatinineOrder = Context.getConceptService() .getConceptByUuid("790AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.lABORATORY_ORDER), labcreatinineOrder, "", null, null, enlabNew, null, v); } EncounterType labresultEnrollEncType = MetadataUtils.existing( EncounterType.class, CommonMetadata._EncounterType.LAB_RESULTS); Encounter labresultEncounter = new Encounter(); labresultEncounter.setEncounterType(labresultEnrollEncType); labresultEncounter.setPatient(patient); labresultEncounter.setDateCreated(curDate); labresultEncounter.setEncounterDatetime(dateVisit); labresultEncounter.setVisit(v); labresultEncounter.setVoided(false); Encounter enlabresultNew = Context.getEncounterService() .saveEncounter(labresultEncounter); if (!legacyData.get(7).isEmpty()) { String cd4Result = legacyData.get(7); Double cd4Count = Double.parseDouble(cd4Result); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.CD4_COUNT), null, legacyData.get(7), null, cd4Count, enlabresultNew, null, v); } if (!legacyData.get(37).isEmpty()) { String labResult = legacyData.get(37); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("1019AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"), null, labResult, null, null, enlabresultNew, null, v); } if (!legacyData.get(38).isEmpty()) { String labResult = legacyData.get(38); Double lab = Double.parseDouble(labResult); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("122858AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"), null, labResult, null, lab, enlabresultNew, null, v); } if (!legacyData.get(39).isEmpty()) { String labResult = legacyData.get(39); Double lab = Double.parseDouble(labResult); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("654AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"), null, labResult, null, lab, enlabresultNew, null, v); } if (!legacyData.get(8).isEmpty()) { String labResult = legacyData.get(8); Double lab = Double.parseDouble(labResult); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.HIV_VIRAL_LOAD), null, labResult, null, lab, enlabresultNew, null, v); } if (!legacyData.get(40).isEmpty()) { String labResult = legacyData.get(40); Double lab = Double.parseDouble(labResult); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("790AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"), null, labResult, null, lab, enlabresultNew, null, v); } EncounterType tbOIEnrollEncType = MetadataUtils.existing(EncounterType.class, CommonMetadata._EncounterType.CONSULTATION); Encounter tbOIEncounter = new Encounter(); tbOIEncounter.setEncounterType(tbOIEnrollEncType); tbOIEncounter.setPatient(patient); tbOIEncounter.setDateCreated(curDate); tbOIEncounter.setEncounterDatetime(dateVisit); tbOIEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); tbOIEncounter.setForm( MetadataUtils.existing(Form.class, CommonMetadata._Form.TB_SCREENING)); tbOIEncounter.setVisit(v); tbOIEncounter.setVoided(false); Encounter entbOIresultNew = Context.getEncounterService() .saveEncounter(tbOIEncounter); Obs o = null; if (!legacyData.get(27).isEmpty()) { String text = ""; Obs OIGroup = new Obs(); OIGroup.setPerson(patient); OIGroup.setConcept(Dictionary.getConcept(Dictionary.OI_GROUP_TB_FORM)); OIGroup.setObsDatetime(entbOIresultNew.getEncounterDatetime()); // Added value coded as per default obs // object // format. OIGroup.setValueCoded(null); OIGroup.setValueText(text); OIGroup.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); OIGroup.setEncounter(entbOIresultNew); if (!legacyData.get(27).isEmpty()) { o = Context.getObsService().saveObs(OIGroup, "KenyaEMR History Details"); } if (!legacyData.get(27).isEmpty()) { String oivalue = legacyData.get(27); String[] valueList = oivalue.split("\\s*,\\s*"); for (String oiname : valueList) { Concept oiConcept = Context.getConceptService().getConcept(oiname); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.HIV_CARE_DIAGNOSIS), oiConcept, "", null, null, entbOIresultNew, o, v); } } } if (!legacyData.get(10).isEmpty()) { Concept tbStatus = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(10))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TB_PATIENT), tbStatus, "", null, null, entbOIresultNew, null, v); } if (!legacyData.get(11).isEmpty()) { Concept tbDiseaseClassification = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(11))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.SITE_OF_TUBERCULOSIS_DISEASE), tbDiseaseClassification, "", null, null, entbOIresultNew, null, v); if (!legacyData.get(12).isEmpty()) { if (!tbDiseaseClassification.equals("42")) { Concept tbsiteClassification = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(12))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TB_SITE), tbsiteClassification, "", null, null, entbOIresultNew, null, v); } } } if (!legacyData.get(13).isEmpty()) { SimpleDateFormat sdf = new SimpleDateFormat("E MMM dd HH:mm:ss Z yyyy"); Date tbStartDate = new Date(); try { tbStartDate = (Date) formatter.parse(legacyData.get(13)); } catch (ParseException e) { e.printStackTrace(); } handleOncePerPatientObs(patient, Dictionary.getConcept( Dictionary.TUBERCULOSIS_DRUG_TREATMENT_START_DATE), null, null, tbStartDate, null, entbOIresultNew, null, v); } if (!legacyData.get(14).isEmpty()) { Concept tbTownship = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(14))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TOWNSHIP), tbTownship, "", null, null, entbOIresultNew, null, v); } if (!legacyData.get(15).isEmpty()) { String tbclinicName = ""; tbclinicName = legacyData.get(15); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TB_CLINIC_NAME), null, tbclinicName, null, null, entbOIresultNew, null, v); } if (!legacyData.get(16).isEmpty()) { String tbregistrationNumber = ""; tbregistrationNumber = legacyData.get(16); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TUBERCULOSIS_TREATMENT_NUMBER), null, tbregistrationNumber, null, null, entbOIresultNew, null, v); } if (!legacyData.get(17).isEmpty()) { Concept tbRegimen = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(17))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TB_FORM_REGIMEN), tbRegimen, "", null, null, entbOIresultNew, null, v); } if (!legacyData.get(18).isEmpty()) { Concept tbOutcome = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(18))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TUBERCULOSIS_TREATMENT_OUTCOME), tbOutcome, null, null, null, entbOIresultNew, null, v); } if (!legacyData.get(19).isEmpty()) { Date tbOutcomeDate = null; Date curDatenew = new Date(); try { tbOutcomeDate = (Date) formatter.parse(legacyData.get(19)); dateCheck = visitDateInExcel.format(tbOutcomeDate); tbOutcomeDate = mysqlDateTimeFormatter.parse(dateCheck + " " + curDatenew.getHours() + ":" + curDatenew.getMinutes() + ":" + curDatenew.getSeconds()); } catch (ParseException e) { e.printStackTrace(); } handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TB_OUTCOME_DATE), null, null, tbOutcomeDate, null, entbOIresultNew, null, v); } int flag = 0; if (!legacyData.get(20).isEmpty()) { EncounterType HivdiscontEnrollEncType = MetadataUtils.existing( EncounterType.class, HivMetadata._EncounterType.HIV_DISCONTINUATION); Encounter hivDiscontEncounter = new Encounter(); hivDiscontEncounter.setEncounterType(HivdiscontEnrollEncType); hivDiscontEncounter.setPatient(patient); hivDiscontEncounter.setDateCreated(curDate); hivDiscontEncounter.setEncounterDatetime(dateVisit); hivDiscontEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); hivDiscontEncounter.setForm(MetadataUtils.existing(Form.class, HivMetadata._Form.HIV_DISCONTINUATION)); hivDiscontEncounter.setVisit(v); hivDiscontEncounter.setVoided(false); Encounter enhivDiscontresultNew = Context.getEncounterService() .saveEncounter(hivDiscontEncounter); Concept endOfFollowup = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(20))); if (legacyData.get(20).equals("160034")) { handleOncePerPatientObs(patient, Dictionary.getConcept( Dictionary.REASON_FOR_PROGRAM_DISCONTINUATION), endOfFollowup, null, null, null, enhivDiscontresultNew, null, v); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.DEATH_DATE), null, null, dateVisit, null, enhivDiscontresultNew, null, v); flag = 1; } else if (legacyData.get(20).equals("159492")) { handleOncePerPatientObs(patient, Dictionary.getConcept( Dictionary.REASON_FOR_PROGRAM_DISCONTINUATION), endOfFollowup, null, null, null, enhivDiscontresultNew, null, v); if (!legacyData.get(22).isEmpty()) { String transferdto = legacyData.get(22); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.TRANSFERRED_OUT_TO), null, transferdto, null, null, enhivDiscontresultNew, null, v); } handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.DATE_TRANSFERRED_OUT), null, null, dateVisit, null, enhivDiscontresultNew, null, v); } else { handleOncePerPatientObs(patient, Dictionary.getConcept( Dictionary.REASON_FOR_PROGRAM_DISCONTINUATION), endOfFollowup, null, null, null, enhivDiscontresultNew, null, v); } if (!legacyData.get(21).isEmpty()) { Date programcmpleteDate = null; Date curDatenew = new Date(); try { programcmpleteDate = (Date) formatter.parse(legacyData.get(21)); dateCheck = visitDateInExcel.format(programcmpleteDate); programcmpleteDate = mysqlDateTimeFormatter.parse(dateCheck + " " + curDatenew.getHours() + ":" + curDatenew.getMinutes() + ":" + curDatenew.getSeconds()); Collection<PatientProgram> hivprogram = Context .getProgramWorkflowService().getPatientPrograms(patient); for (PatientProgram prog : hivprogram) { if (prog.getPatient().equals(patient)) { if (prog.getProgram().getUuid() .equals("dfdc6d40-2f2f-463d-ba90-cc97350441a8") && prog.getDateCompleted() == null) { prog.setDateCompleted(programcmpleteDate); Context.getProgramWorkflowService() .savePatientProgram(prog); } } } } catch (ParseException e) { e.printStackTrace(); } } } if (!legacyData.get(23).isEmpty() && !legacyData.get(24).isEmpty()) { PatientProgram activeArtProgram = null; Collection<PatientProgram> artProgram = Context.getProgramWorkflowService() .getPatientPrograms(patient); for (PatientProgram artProg : artProgram) { if (artProg.getProgram().getUuid() .equals("96ec813f-aaf0-45b2-add6-e661d5bf79d6") && artProg.getDateCompleted() == null) { activeArtProgram = artProg; } } EncounterType ArtdiscontEnrollEncType = MetadataUtils .existing(EncounterType.class, ArtMetadata._EncounterType.STOP_ART); Encounter artDiscontEncounter = new Encounter(); artDiscontEncounter.setEncounterType(ArtdiscontEnrollEncType); artDiscontEncounter.setPatient(patient); artDiscontEncounter.setDateCreated(curDate); artDiscontEncounter.setEncounterDatetime(dateVisit); artDiscontEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); artDiscontEncounter.setForm( MetadataUtils.existing(Form.class, ArtMetadata._Form.STOP_ART)); artDiscontEncounter.setVisit(v); artDiscontEncounter.setVoided(false); Encounter enartDiscontresultNew = Context.getEncounterService() .saveEncounter(artDiscontEncounter); Date programcmpleteDate = null; Date curDatenew = new Date(); try { programcmpleteDate = (Date) formatter.parse(legacyData.get(23)); dateCheck = visitDateInExcel.format(programcmpleteDate); programcmpleteDate = mysqlDateTimeFormatter.parse(dateCheck + " " + curDatenew.getHours() + ":" + curDatenew.getMinutes() + ":" + curDatenew.getSeconds()); if (activeArtProgram != null) { activeArtProgram.setDateCompleted(programcmpleteDate); } } catch (ParseException e) { e.printStackTrace(); } Context.getProgramWorkflowService().savePatientProgram(activeArtProgram); if (!legacyData.get(24).isEmpty()) { Concept endOfArt = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(24))); handleOncePerPatientObs(patient, Context.getConceptService().getConceptByUuid( "1252AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"), endOfArt, null, null, null, enartDiscontresultNew, null, v); } } EncounterType consultEnrollEncType = MetadataUtils.existing(EncounterType.class, CommonMetadata._EncounterType.CONSULTATION); Encounter consultEncounter = new Encounter(); consultEncounter.setEncounterType(consultEnrollEncType); consultEncounter.setPatient(patient); consultEncounter.setDateCreated(curDate); consultEncounter.setEncounterDatetime(dateVisit); consultEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); consultEncounter.setForm(MetadataUtils.existing(Form.class, CommonMetadata._Form.CONSULTATION_ENCOUNTER)); consultEncounter.setVisit(v); consultEncounter.setVoided(false); Encounter enconsultresultNew = Context.getEncounterService() .saveEncounter(consultEncounter); if (!legacyData.get(30).isEmpty()) { Concept sideffectsOfArt = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(30))); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("159935AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"), Dictionary.getConcept(Dictionary.YES), null, null, null, enconsultresultNew, null, v); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.ART_SIDE_EFFECTS_VALUES), sideffectsOfArt, null, null, null, enconsultresultNew, null, v); } if (!legacyData.get(31).isEmpty()) { String levelOfAdherence = legacyData.get(31); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.ART_ADHERENCE), null, levelOfAdherence, null, null, enconsultresultNew, null, v); } if (!legacyData.get(41).isEmpty()) { Concept temporaryreferal = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(41))); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("5e05d243-e039-4f04-9988-18d5a499329e"), Dictionary.getConcept(Dictionary.YES), null, null, null, enconsultresultNew, null, v); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("c648f69b-7065-4255-9af2-6076348c87dc"), temporaryreferal, null, null, null, enconsultresultNew, null, v); } if (!legacyData.get(28).isEmpty()) { Concept tbOutcome = new Concept(); String performance = legacyData.get(28); if (performance.equals("A")) { tbOutcome = Dictionary.getConcept(Dictionary.PERFSCALE_A); } else if (performance.equals("B")) { tbOutcome = Dictionary.getConcept(Dictionary.PERFSCALE_B); } else { tbOutcome = Dictionary.getConcept(Dictionary.PERFSCALE_C); } handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.PERFORMANCE), tbOutcome, null, null, null, entbOIresultNew, null, v); } if (!legacyData.get(29).isEmpty()) { Concept tbOutcome = new Concept(); String stage = legacyData.get(29); if (stage.equals("IV")) { tbOutcome = Dictionary.getConcept(Dictionary.WHO_STAGE_4_ADULT); } else if (stage.equals("III")) { tbOutcome = Dictionary.getConcept(Dictionary.WHO_STAGE_3_ADULT); } else if (stage.equals("II")) { tbOutcome = Dictionary.getConcept(Dictionary.WHO_STAGE_2_ADULT); } else { tbOutcome = Dictionary.getConcept(Dictionary.WHO_STAGE_1_ADULT); } handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.CURRENT_WHO_STAGE), tbOutcome, null, null, null, entbOIresultNew, null, v); } EncounterType nextAppointEncType = MetadataUtils.existing(EncounterType.class, CommonMetadata._EncounterType.CONSULTATION); Encounter nextAppointEncounter = new Encounter(); nextAppointEncounter.setEncounterType(nextAppointEncType); nextAppointEncounter.setPatient(patient); nextAppointEncounter.setDateCreated(curDate); nextAppointEncounter.setEncounterDatetime(dateVisit); nextAppointEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); nextAppointEncounter.setVisit(v); nextAppointEncounter.setVoided(false); Encounter ennextAppointresultNew = new Encounter(); if (!legacyData.get(32).isEmpty()) { ennextAppointresultNew = Context.getEncounterService() .saveEncounter(nextAppointEncounter); } if (!legacyData.get(32).isEmpty()) { SimpleDateFormat sdf = new SimpleDateFormat("E MMM dd HH:mm:ss Z yyyy"); Date nextAppointDate = new Date(); try { nextAppointDate = (Date) formatter.parse(legacyData.get(32)); } catch (ParseException e) { e.printStackTrace(); } handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.RETURN_VISIT_DATE), null, null, nextAppointDate, null, ennextAppointresultNew, null, v); } // For OI or PROPHYLAXIS if (!legacyData.get(33).isEmpty() || !legacyData.get(34).isEmpty()) { // For Duration of Medication if (!legacyData.get(6).isEmpty()) { EncounterType otherMedicationEnrollEncType = MetadataUtils.existing( EncounterType.class, CommonMetadata._EncounterType.CONSULTATION); Encounter otherMedEncounter = new Encounter(); otherMedEncounter.setEncounterType(otherMedicationEnrollEncType); otherMedEncounter.setPatient(patient); otherMedEncounter.setDateCreated(curDate); otherMedEncounter.setEncounterDatetime(dateVisit); otherMedEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); otherMedEncounter.setForm(MetadataUtils.existing(Form.class, CommonMetadata._Form.OTHER_MEDICATIONS)); otherMedEncounter.setVisit(v); otherMedEncounter.setVoided(false); Encounter enotherresultNew = Context.getEncounterService() .saveEncounter(otherMedEncounter); String duration = legacyData.get(6); Double durationDouble = Double.parseDouble(duration); int durationInteger = Integer.parseInt(legacyData.get(6)); /* * PROPHYLAXIS start */ if (!legacyData.get(33).isEmpty()) { String value = legacyData.get(33); String[] valueList = value.split("\\s*,\\s*"); for (String prop : valueList) { // Group for each Drug String text = ""; Obs prophylGroup = new Obs(); prophylGroup.setPerson(patient); prophylGroup.setConcept( Context.getConceptService().getConceptByUuid( "163022AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA")); prophylGroup.setObsDatetime( enotherresultNew.getEncounterDatetime()); prophylGroup.setValueCoded(null); prophylGroup.setValueText(text); prophylGroup .setLocation(Context.getService(KenyaEmrService.class) .getDefaultLocation()); prophylGroup.setEncounter(enotherresultNew); prophylGroup.setComment("1"); Obs prophyl = Context.getObsService().saveObs(prophylGroup, "KenyaEMR History Details"); Concept oivalue = Context.getConceptService().getConcept(prop); // CPT for CTX if (oivalue.getUuid().toString() .equals("105281AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA")) { handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.CPT_VALUE), Context.getConceptService().getConcept(1065), "", null, null, enotherresultNew, null, v); } // IPT for Isoniazid if (oivalue.getUuid().toString() .equals("78280AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA")) { handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.IPT_VALUE), Context.getConceptService().getConcept(1065), "", null, null, enotherresultNew, null, v); } handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.PROPHYLAXIS), oivalue, "", null, null, enotherresultNew, prophyl, v); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.MEDICATION_DURATION), null, "", null, durationDouble, enotherresultNew, prophyl, v); // Capture Drug in Drug obs // processed DrugObsProcessed dop = new DrugObsProcessed(); dop.setObs(prophyl); dop.setCreatedDate(curDate); dop.setPatient(patient); dop.setProcessedDate(dateVisit); dop.setQuantityPostProcess(durationInteger); KenyaEmrService kes = (KenyaEmrService) Context .getService(KenyaEmrService.class); kes.saveDrugObsProcessed(dop); } } /* * PROPHYLAXIS End */ if (!legacyData.get(34).isEmpty()) { String value = legacyData.get(34); String[] valueList = value.split("\\s*,\\s*"); for (String oil : valueList) { // Group for each Drug String text = ""; Obs oitreatmentGroup = new Obs(); oitreatmentGroup.setPerson(patient); oitreatmentGroup.setConcept( Context.getConceptService().getConceptByUuid( "163021AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA")); oitreatmentGroup.setObsDatetime( enotherresultNew.getEncounterDatetime()); oitreatmentGroup.setValueCoded(null); oitreatmentGroup.setValueText(text); oitreatmentGroup .setLocation(Context.getService(KenyaEmrService.class) .getDefaultLocation()); oitreatmentGroup.setEncounter(enotherresultNew); oitreatmentGroup.setComment("1"); Obs oitreat = Context.getObsService().saveObs(oitreatmentGroup, "KenyaEMR History Details"); Concept oivalue = Context.getConceptService().getConcept(oil); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.OI_TREATMENT_DRUG), oivalue, "", null, null, enotherresultNew, oitreat, v); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.MEDICATION_DURATION), null, "", null, durationDouble, enotherresultNew, oitreat, v); // Capture Drug in Drug obs // processed DrugObsProcessed dop = new DrugObsProcessed(); dop.setObs(oitreat); dop.setCreatedDate(curDate); dop.setPatient(patient); dop.setProcessedDate(dateVisit); dop.setQuantityPostProcess(durationInteger); KenyaEmrService kes = (KenyaEmrService) Context .getService(KenyaEmrService.class); kes.saveDrugObsProcessed(dop); } } } } EncounterType recordEncType = MetadataUtils.existing(EncounterType.class, CommonMetadata._EncounterType.CONSULTATION); Encounter recordEncounter = new Encounter(); recordEncounter.setEncounterType(recordEncType); recordEncounter.setPatient(patient); recordEncounter.setDateCreated(curDate); recordEncounter.setEncounterDatetime(dateVisit); recordEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); recordEncounter.setForm( MetadataUtils.existing(Form.class, CommonMetadata._Form.TRIAGE)); recordEncounter.setVisit(v); recordEncounter.setVoided(false); Encounter enrecordvitalresultNew = Context.getEncounterService() .saveEncounter(recordEncounter); if (!legacyData.get(25).isEmpty()) { String labResult = legacyData.get(25); Double lab = Double.parseDouble(labResult); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.WEIGHT_KG), null, null, null, lab, enrecordvitalresultNew, null, v); } if (!legacyData.get(26).isEmpty()) { String labResult = legacyData.get(26); Double lab = Double.parseDouble(labResult); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.HEIGHT_CM), null, null, null, lab, enrecordvitalresultNew, null, v); } EncounterType hivEnrollEncType = MetadataUtils.existing(EncounterType.class, HivMetadata._EncounterType.HIV_ENROLLMENT); EncounterType registrationEncType = MetadataUtils.existing(EncounterType.class, CommonMetadata._EncounterType.REGISTRATION); Encounter obstericEncounter = new Encounter(); obstericEncounter.setEncounterType(registrationEncType); obstericEncounter.setPatient(patient); obstericEncounter.setDateCreated(curDate); obstericEncounter.setEncounterDatetime(dateVisit); obstericEncounter.setLocation( Context.getService(KenyaEmrService.class).getDefaultLocation()); obstericEncounter.setForm( MetadataUtils.existing(Form.class, Metadata.Form.OBSTETRIC_HISTORY)); obstericEncounter.setVisit(v); obstericEncounter.setVoided(false); Encounter enobstericrecordresultNew = Context.getEncounterService() .saveEncounter(obstericEncounter); if (!legacyData.get(42).isEmpty()) { Concept pregstatus = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(42))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.PREGNANCY_STATUS), pregstatus, "", null, null, enobstericrecordresultNew, null, v); } if (!legacyData.get(43).isEmpty()) { Concept familyplanningstatus = Dictionary.getConcept(Dictionary.YES); handleOncePerPatientObs(patient, Context.getConceptService() .getConceptByUuid("5271AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"), familyplanningstatus, "", null, null, enobstericrecordresultNew, null, v); } if (!legacyData.get(43).isEmpty()) { Concept familyplanningvalue = Context.getConceptService() .getConcept(Integer.parseInt(legacyData.get(43))); handleOncePerPatientObs(patient, Dictionary.getConcept(Dictionary.METHOD_OF_FAMILY_PLANNING), familyplanningvalue, "", null, null, enobstericrecordresultNew, null, v); } DateFormat visitDatesInExcel = new SimpleDateFormat("dd-MMM-yyyy"); String dateChecks = visitDatesInExcel.format(dateVisit); if (legacyData.get(3) != null) { Date Datenew = new Date(); try { dateVisit = mysqlDateTimeFormatter .parse(dateChecks + " " + Datenew.getHours() + ":" + Datenew.getMinutes() + ":" + Datenew.getSeconds()); } catch (ParseException e) { dateVisit = Datenew; e.printStackTrace(); } } v.setStopDatetime(dateVisit); Context.getVisitService().saveVisit(v); if (flag == 1) { person.setDead(true); person.setDeathDate(dateVisit); person.setCauseOfDeath(Dictionary.getConcept(Dictionary.UNKNOWN)); Context.getPersonService().savePerson(person); } } } catch (IndexOutOfBoundsException e) { e.printStackTrace(); } } else { break; } } } catch (IndexOutOfBoundsException e) { break; } rowCountVisit++; } } inputStream.close(); // workbook.close(); return new SuccessResult("Saved Patient Data"); }
From source file:org.openmrs.module.spreadsheetimport.SpreadsheetImportUtil.java
License:Open Source License
public static File importTemplate(SpreadsheetImportTemplate template, MultipartFile file, String sheetName, List<String> messages, boolean rollbackTransaction) throws Exception { if (file.isEmpty()) { messages.add("file must not be empty"); return null; }//from w w w . ja v a 2 s . c o m // Open file Workbook wb = WorkbookFactory.create(file.getInputStream()); Sheet sheet; if (!StringUtils.hasText(sheetName)) { sheet = wb.getSheetAt(0); } else { sheet = wb.getSheet(sheetName); } // Header row Row firstRow = sheet.getRow(0); if (firstRow == null) { messages.add("Spreadsheet header row must not be null"); return null; } List<String> columnNames = new Vector<String>(); for (Cell cell : firstRow) { columnNames.add(cell.getStringCellValue()); } if (log.isDebugEnabled()) { log.debug("Column names: " + columnNames.toString()); } // Required column names List<String> columnNamesOnlyInTemplate = new Vector<String>(); columnNamesOnlyInTemplate.addAll(template.getColumnNamesAsList()); columnNamesOnlyInTemplate.removeAll(columnNames); if (columnNamesOnlyInTemplate.isEmpty() == false) { messages.add("required column names not present: " + toString(columnNamesOnlyInTemplate)); return null; } // Extra column names? List<String> columnNamesOnlyInSheet = new Vector<String>(); columnNamesOnlyInSheet.addAll(columnNames); columnNamesOnlyInSheet.removeAll(template.getColumnNamesAsList()); if (columnNamesOnlyInSheet.isEmpty() == false) { messages.add( "Extra column names present, these will not be processed: " + toString(columnNamesOnlyInSheet)); } // Process rows boolean skipThisRow = true; for (Row row : sheet) { if (skipThisRow == true) { skipThisRow = false; } else { boolean rowHasData = false; Map<UniqueImport, Set<SpreadsheetImportTemplateColumn>> rowData = template .getMapOfUniqueImportToColumnSetSortedByImportIdx(); for (UniqueImport uniqueImport : rowData.keySet()) { Set<SpreadsheetImportTemplateColumn> columnSet = rowData.get(uniqueImport); for (SpreadsheetImportTemplateColumn column : columnSet) { int idx = columnNames.indexOf(column.getName()); Cell cell = row.getCell(idx); Object value = null; // check for empty cell (new Encounter) if (cell == null) { rowHasData = true; column.setValue(""); continue; } switch (cell.getCellType()) { case Cell.CELL_TYPE_BOOLEAN: value = new Boolean(cell.getBooleanCellValue()); break; case Cell.CELL_TYPE_ERROR: value = new Byte(cell.getErrorCellValue()); break; case Cell.CELL_TYPE_FORMULA: case Cell.CELL_TYPE_NUMERIC: if (DateUtil.isCellDateFormatted(cell)) { java.util.Date date = cell.getDateCellValue(); value = "'" + new java.sql.Timestamp(date.getTime()).toString() + "'"; } else { value = cell.getNumericCellValue(); } break; case Cell.CELL_TYPE_STRING: // Escape for SQL value = "'" + cell.getRichStringCellValue() + "'"; break; } if (value != null) { rowHasData = true; column.setValue(value); } else column.setValue(""); } } for (UniqueImport uniqueImport : rowData.keySet()) { Set<SpreadsheetImportTemplateColumn> columnSet = rowData.get(uniqueImport); boolean isFirst = true; for (SpreadsheetImportTemplateColumn column : columnSet) { if (isFirst) { // Should be same for all columns in unique import // System.out.println("SpreadsheetImportUtil.importTemplate: column.getColumnPrespecifiedValues(): " + column.getColumnPrespecifiedValues().size()); if (column.getColumnPrespecifiedValues().size() > 0) { Set<SpreadsheetImportTemplateColumnPrespecifiedValue> columnPrespecifiedValueSet = column .getColumnPrespecifiedValues(); for (SpreadsheetImportTemplateColumnPrespecifiedValue columnPrespecifiedValue : columnPrespecifiedValueSet) { // System.out.println(columnPrespecifiedValue.getPrespecifiedValue().getValue()); } } } } } if (rowHasData) { Exception exception = null; try { DatabaseBackend.validateData(rowData); String encounterId = DatabaseBackend.importData(rowData, rollbackTransaction); if (encounterId != null) { for (UniqueImport uniqueImport : rowData.keySet()) { Set<SpreadsheetImportTemplateColumn> columnSet = rowData.get(uniqueImport); for (SpreadsheetImportTemplateColumn column : columnSet) { if ("encounter".equals(column.getTableName())) { int idx = columnNames.indexOf(column.getName()); Cell cell = row.getCell(idx); if (cell == null) cell = row.createCell(idx); cell.setCellValue(encounterId); } } } } } catch (SpreadsheetImportTemplateValidationException e) { messages.add("Validation failed: " + e.getMessage()); return null; } catch (SpreadsheetImportDuplicateValueException e) { messages.add("found duplicate value for column " + e.getColumn().getName() + " with value " + e.getColumn().getValue()); return null; } catch (SpreadsheetImportSQLSyntaxException e) { messages.add("SQL syntax error: \"" + e.getSqlErrorMessage() + "\".<br/>Attempted SQL Statement: \"" + e.getSqlStatement() + "\""); return null; } catch (Exception e) { exception = e; } if (exception != null) { throw exception; } } } } // write back Excel file to a temp location File returnFile = File.createTempFile("sim", ".xls"); FileOutputStream fos = new FileOutputStream(returnFile); wb.write(fos); fos.close(); return returnFile; }
From source file:org.openstreetmap.josm.plugins.opendata.core.io.tabular.XlsReader.java
License:GNU General Public License
@Override protected String[] readLine(ProgressMonitor progressMonitor) throws IOException { if (sheet != null) { Row row = sheet.getRow(rowIndex++); if (row != null) { List<String> result = new ArrayList<>(); for (Cell cell : row) { switch (cell.getCellType()) { case Cell.CELL_TYPE_STRING: result.add(cell.getRichStringCellValue().getString()); break; case Cell.CELL_TYPE_NUMERIC: if (DateUtil.isCellDateFormatted(cell)) { result.add(cell.getDateCellValue().toString()); } else { result.add(Double.toString(cell.getNumericCellValue())); }/* w w w . j a va 2 s.c o m*/ break; case Cell.CELL_TYPE_BOOLEAN: result.add(Boolean.toString(cell.getBooleanCellValue())); break; case Cell.CELL_TYPE_FORMULA: result.add(cell.getCellFormula()); break; default: result.add(""); } } return result.toArray(new String[0]); } } return null; }
From source file:org.pentaho.reporting.ui.datasources.table.ImportFromFileTask.java
License:Open Source License
private void importFromFile(final File file, final boolean firstRowIsHeader) { final ByteArrayOutputStream bout = new ByteArrayOutputStream(Math.max(8192, (int) file.length())); try {//from w w w .j ava 2 s . c o m final InputStream fin = new FileInputStream(file); try { IOUtils.getInstance().copyStreams(new BufferedInputStream(fin), bout); } finally { fin.close(); } if (Thread.currentThread().isInterrupted()) { return; } final Workbook workbook = WorkbookFactory.create(new ByteArrayInputStream(bout.toByteArray())); int sheetIndex = 0; if (workbook.getNumberOfSheets() > 1) { final SheetSelectorDialog selectorDialog = new SheetSelectorDialog(workbook, parent); if (selectorDialog.performSelection()) { sheetIndex = selectorDialog.getSelectedIndex(); } else { return; } } final TypedTableModel tableModel = new TypedTableModel(); final Sheet sheet = workbook.getSheetAt(sheetIndex); final Iterator rowIterator = sheet.rowIterator(); if (firstRowIsHeader) { if (rowIterator.hasNext()) { final Row headerRow = (Row) rowIterator.next(); final short cellCount = headerRow.getLastCellNum(); for (short colIdx = 0; colIdx < cellCount; colIdx++) { final Cell cell = headerRow.getCell(colIdx); if (cell != null) { while (colIdx > tableModel.getColumnCount()) { tableModel.addColumn(Messages.getString("TableDataSourceEditor.Column", String.valueOf(tableModel.getColumnCount())), Object.class); } final RichTextString string = cell.getRichStringCellValue(); if (string != null) { tableModel.addColumn(string.getString(), Object.class); } else { tableModel.addColumn( Messages.getString("TableDataSourceEditor.Column", String.valueOf(colIdx)), Object.class); } } } } } Object[] rowData = null; while (rowIterator.hasNext()) { final Row row = (Row) rowIterator.next(); final short cellCount = row.getLastCellNum(); if (cellCount == -1) { continue; } if (rowData == null || rowData.length != cellCount) { rowData = new Object[cellCount]; } for (short colIdx = 0; colIdx < cellCount; colIdx++) { final Cell cell = row.getCell(colIdx); final Object value; if (cell != null) { if (cell.getCellType() == Cell.CELL_TYPE_STRING) { final RichTextString string = cell.getRichStringCellValue(); if (string != null) { value = string.getString(); } else { value = null; } } else if (cell.getCellType() == Cell.CELL_TYPE_NUMERIC) { final CellStyle hssfCellStyle = cell.getCellStyle(); final short dataFormat = hssfCellStyle.getDataFormat(); final String dataFormatString = hssfCellStyle.getDataFormatString(); if (isDateFormat(dataFormat, dataFormatString)) { value = cell.getDateCellValue(); } else { value = cell.getNumericCellValue(); } } else if (cell.getCellType() == Cell.CELL_TYPE_BOOLEAN) { value = cell.getBooleanCellValue(); } else { value = cell.getStringCellValue(); } } else { value = null; } if (value != null && "".equals(value) == false) { while (colIdx >= tableModel.getColumnCount()) { tableModel.addColumn(Messages.getString("TableDataSourceEditor.Column", String.valueOf(tableModel.getColumnCount())), Object.class); } } rowData[colIdx] = value; } if (Thread.currentThread().isInterrupted()) { return; } tableModel.addRow(rowData); } final int colCount = tableModel.getColumnCount(); final int rowCount = tableModel.getRowCount(); for (int col = 0; col < colCount; col++) { Class type = null; for (int row = 0; row < rowCount; row += 1) { final Object value = tableModel.getValueAt(row, col); if (value == null) { continue; } if (type == null) { type = value.getClass(); } else if (type != Object.class) { if (type.isInstance(value) == false) { type = Object.class; } } } if (Thread.currentThread().isInterrupted()) { return; } if (type != null) { tableModel.setColumnType(col, type); } } parent.importComplete(tableModel); } catch (Exception e) { parent.importFailed(e); logger.error("Failed to import spreadsheet", e); // NON-NLS } }
From source file:org.protempa.test.XlsxDataProvider.java
License:Apache License
/** * Read a date value from the given spreadsheet cell. * * @param cell The cell to read the value from. * @return The date in the cell, if valid, null otherwise. *//*from w w w. j av a2 s .co m*/ private static Date readDateValue(Cell cell) { if (cell != null) { Date result; try { result = cell.getDateCellValue(); } catch (IllegalStateException ex) { String value = XlsxDataProvider.readStringValue(cell); if (value == null) { result = null; } else { try { result = SDF.parse(value); } catch (ParseException e) { result = null; } } } return result; } else { return null; } }