Example usage for org.apache.hadoop.mapreduce Job getInstance

Introduction

In this page you can find the example usage for org.apache.hadoop.mapreduce Job getInstance.

Prototype

@Deprecated
public static Job getInstance(Cluster ignored) throws IOException 

Source Link

Document

Creates a new Job with no particular Cluster .

Usage

From source file:RunPageRankBasic.java

License:Apache License

private float phase1(int i, int j, String basePath, int numNodes, boolean useCombiner,
        boolean useInMapperCombiner) throws Exception {
    Job job = Job.getInstance(getConf());
    job.setJobName("PageRank:Basic:iteration" + j + ":Phase1");
    job.setJarByClass(RunPageRankBasic.class);

    String in = basePath + "/iter" + formatter.format(i);
    String out = basePath + "/iter" + formatter.format(j) + "t";
    String outm = out + "-mass";

    // We need to actually count the number of part files to get the number of partitions (because
    // the directory might contain _log).
    int numPartitions = 0;
    for (FileStatus s : FileSystem.get(getConf()).listStatus(new Path(in))) {
        if (s.getPath().getName().contains("part-"))
            numPartitions++;/*from  w  ww.  java 2  s.c  o m*/
    }

    LOG.info("PageRank: iteration " + j + ": Phase1");
    LOG.info(" - input: " + in);
    LOG.info(" - output: " + out);
    LOG.info(" - nodeCnt: " + numNodes);
    LOG.info(" - useCombiner: " + useCombiner);
    LOG.info(" - useInmapCombiner: " + useInMapperCombiner);
    LOG.info("computed number of partitions: " + numPartitions);

    int numReduceTasks = numPartitions;

    job.getConfiguration().setInt("NodeCount", numNodes);
    job.getConfiguration().setBoolean("mapred.map.tasks.speculative.execution", false);
    job.getConfiguration().setBoolean("mapred.reduce.tasks.speculative.execution", false);
    //job.getConfiguration().set("mapred.child.java.opts", "-Xmx2048m");
    job.getConfiguration().set("PageRankMassPath", outm);

    job.setNumReduceTasks(numReduceTasks);

    FileInputFormat.setInputPaths(job, new Path(in));
    FileOutputFormat.setOutputPath(job, new Path(out));

    job.setInputFormatClass(NonSplitableSequenceFileInputFormat.class);
    job.setOutputFormatClass(SequenceFileOutputFormat.class);

    job.setMapOutputKeyClass(IntWritable.class);
    job.setMapOutputValueClass(PageRankNode.class);

    job.setOutputKeyClass(IntWritable.class);
    job.setOutputValueClass(PageRankNode.class);

    job.setMapperClass(useInMapperCombiner ? MapWithInMapperCombiningClass.class : MapClass.class);

    if (useCombiner) {
        job.setCombinerClass(CombineClass.class);
    }

    job.setReducerClass(ReduceClass.class);

    FileSystem.get(getConf()).delete(new Path(out), true);
    FileSystem.get(getConf()).delete(new Path(outm), true);

    long startTime = System.currentTimeMillis();
    job.waitForCompletion(true);
    System.out.println("Job Finished in " + (System.currentTimeMillis() - startTime) / 1000.0 + " seconds");

    float mass = Float.NEGATIVE_INFINITY;
    FileSystem fs = FileSystem.get(getConf());
    for (FileStatus f : fs.listStatus(new Path(outm))) {
        FSDataInputStream fin = fs.open(f.getPath());
        mass = sumLogProbs(mass, fin.readFloat());
        fin.close();
    }

    return mass;
}

---

From source file:RunPageRankBasic.java

License:Apache License

private void phase2(int i, int j, float missing, String basePath, int numNodes) throws Exception {
    Job job = Job.getInstance(getConf());
    job.setJobName("PageRank:Basic:iteration" + j + ":Phase2");
    job.setJarByClass(RunPageRankBasic.class);

    LOG.info("missing PageRank mass: " + missing);
    LOG.info("number of nodes: " + numNodes);

    String in = basePath + "/iter" + formatter.format(j) + "t";
    String out = basePath + "/iter" + formatter.format(j);

    LOG.info("PageRank: iteration " + j + ": Phase2");
    LOG.info(" - input: " + in);
    LOG.info(" - output: " + out);

    job.getConfiguration().setBoolean("mapred.map.tasks.speculative.execution", false);
    job.getConfiguration().setBoolean("mapred.reduce.tasks.speculative.execution", false);
    job.getConfiguration().setFloat("MissingMass", (float) missing);
    job.getConfiguration().setInt("NodeCount", numNodes);

    job.setNumReduceTasks(0);/*from  www  .  ja  v a 2  s  .c  o m*/

    FileInputFormat.setInputPaths(job, new Path(in));
    FileOutputFormat.setOutputPath(job, new Path(out));

    job.setInputFormatClass(NonSplitableSequenceFileInputFormat.class);
    job.setOutputFormatClass(SequenceFileOutputFormat.class);

    job.setMapOutputKeyClass(IntWritable.class);
    job.setMapOutputValueClass(PageRankNode.class);

    job.setOutputKeyClass(IntWritable.class);
    job.setOutputValueClass(PageRankNode.class);

    job.setMapperClass(MapPageRankMassDistributionClass.class);

    FileSystem.get(getConf()).delete(new Path(out), true);

    long startTime = System.currentTimeMillis();
    job.waitForCompletion(true);
    System.out.println("Job Finished in " + (System.currentTimeMillis() - startTime) / 1000.0 + " seconds");
}

---

From source file:BigramRelativeFrequency.java

License:Apache License

/**
 * Runs this tool./*ww  w.ja va  2  s  .  c  om*/
 */
@SuppressWarnings({ "static-access" })
public int run(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));
    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("output path").create(OUTPUT));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("number of reducers")
            .create(NUM_REDUCERS));

    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        return -1;
    }

    if (!cmdline.hasOption(INPUT) || !cmdline.hasOption(OUTPUT)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(this.getClass().getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        return -1;
    }

    String inputPath = cmdline.getOptionValue(INPUT);
    String outputPath = cmdline.getOptionValue(OUTPUT);
    int reduceTasks = cmdline.hasOption(NUM_REDUCERS) ? Integer.parseInt(cmdline.getOptionValue(NUM_REDUCERS))
            : 1;

    LOG.info("Tool name: " + BigramRelativeFrequency.class.getSimpleName());
    LOG.info(" - input path: " + inputPath);
    LOG.info(" - output path: " + outputPath);
    LOG.info(" - num reducers: " + reduceTasks);

    Job job = Job.getInstance(getConf());
    job.setJobName(BigramRelativeFrequency.class.getSimpleName());
    job.setJarByClass(BigramRelativeFrequency.class);

    job.setNumReduceTasks(reduceTasks);

    FileInputFormat.setInputPaths(job, new Path(inputPath));
    FileOutputFormat.setOutputPath(job, new Path(outputPath));

    job.setMapOutputKeyClass(PairOfStrings.class);
    job.setMapOutputValueClass(FloatWritable.class);
    job.setOutputKeyClass(PairOfStrings.class);
    job.setOutputValueClass(FloatWritable.class);
    //job.setOutputFormatClass(SequenceFileOutputFormat.class);

    job.setMapperClass(MyMapper.class);
    job.setCombinerClass(MyCombiner.class);
    job.setReducerClass(MyReducer.class);
    job.setPartitionerClass(MyPartitioner.class);

    // Delete the output directory if it exists already.
    Path outputDir = new Path(outputPath);
    FileSystem.get(getConf()).delete(outputDir, true);

    long startTime = System.currentTimeMillis();
    job.waitForCompletion(true);
    System.out.println("Job Finished in " + (System.currentTimeMillis() - startTime) / 1000.0 + " seconds");

    return 0;
}

---

From source file:LungDriver.java

License:Creative Commons License

@Override
public int run(String[] args) throws Exception {

    Configuration conf = getConf();

    String author = conf.get("com.marcolotz.author");
    String jobName = conf.get("mapreduce.job.name");
    String inputPath = conf.get("mapred.input.dir");
    String outputPath = conf.get("mapred.output.dir");

    System.out.println("\nApplication author: " + author + "\n");

    System.out.println("Configurations stored at: conf/lungConfiguration.xml");
    System.out.println("Input path: " + inputPath);
    System.out.println("Output path: " + outputPath);

    /* For non-standard operation (i.e. with arguments) */
    if (args.length != 0) {

        /* terminates the program if there is an incorrect input */
        if (processInputs(args, conf) != 0) {
            return 1;
        }//from   w  w  w.  j  a  v a 2  s.c  o m
    }

    System.out.println("Bottom Threshold for nodules candidates detection:"
            + conf.getInt("com.marcolotz.grayNoduleCandidates.bottomThreshold", 110));
    System.out.println("Top Threshold for nodules candidates detection:"
            + conf.getInt("com.marcolotz.grayNoduleCandidates.topThreshold", 120));

    System.out.print("Cleaning output path: ");
    cleanOutputPath(conf, outputPath);

    System.out.print("Configuring the job " + jobName + ": ");

    /* Makes a new job */
    // The classic Job constructor is deprecated.
    Job job = Job.getInstance(conf);

    /*
     * This method sets the jar file in which each node will look for the
     * Mapper and Reducer classes.
     */
    job.setJarByClass(this.getClass());

    System.out.println("[DONE]\n");

    // Submits the job to the cluster
    System.out.println("Distributing the job:");
    return job.waitForCompletion(true) ? 0 : 1;
}

---

From source file:FindMaxPageRankNodes.java

License:Apache License

/**
 * Runs this tool.//from  www . j a  v  a2  s.c o m
 */
@SuppressWarnings({ "static-access" })
public int run(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));
    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("output path").create(OUTPUT));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("top n").create(TOP));

    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        return -1;
    }

    if (!cmdline.hasOption(INPUT) || !cmdline.hasOption(OUTPUT) || !cmdline.hasOption(TOP)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(this.getClass().getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        return -1;
    }

    String inputPath = cmdline.getOptionValue(INPUT);
    String outputPath = cmdline.getOptionValue(OUTPUT);
    int n = Integer.parseInt(cmdline.getOptionValue(TOP));

    LOG.info("Tool name: " + FindMaxPageRankNodes.class.getSimpleName());
    LOG.info(" - input: " + inputPath);
    LOG.info(" - output: " + outputPath);
    LOG.info(" - top: " + n);

    Configuration conf = getConf();
    conf.setInt("mapred.min.split.size", 1024 * 1024 * 1024);
    conf.setInt("n", n);

    Job job = Job.getInstance(conf);
    job.setJobName(FindMaxPageRankNodes.class.getName() + ":" + inputPath);
    job.setJarByClass(FindMaxPageRankNodes.class);

    job.setNumReduceTasks(1);

    FileInputFormat.addInputPath(job, new Path(inputPath));
    FileOutputFormat.setOutputPath(job, new Path(outputPath));

    job.setInputFormatClass(SequenceFileInputFormat.class);
    job.setOutputFormatClass(TextOutputFormat.class);

    job.setMapOutputKeyClass(IntWritable.class);
    job.setMapOutputValueClass(FloatWritable.class);

    job.setOutputKeyClass(IntWritable.class);
    job.setOutputValueClass(FloatWritable.class);

    job.setMapperClass(MyMapper.class);
    job.setReducerClass(MyReducer.class);

    // Delete the output directory if it exists already.
    FileSystem.get(conf).delete(new Path(outputPath), true);

    job.waitForCompletion(true);

    return 0;
}

---

From source file:DumpPageRankRecordsToPlainText.java

License:Apache License

/**
 * Runs this tool.//from  w w w . j a va  2  s  . co  m
 */
@SuppressWarnings({ "static-access" })
public int run(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));
    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("output path").create(OUTPUT));

    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        return -1;
    }

    if (!cmdline.hasOption(INPUT) || !cmdline.hasOption(OUTPUT)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(this.getClass().getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        return -1;
    }

    String inputPath = cmdline.getOptionValue(INPUT);
    String outputPath = cmdline.getOptionValue(OUTPUT);

    LOG.info("Tool name: " + DumpPageRankRecordsToPlainText.class.getSimpleName());
    LOG.info(" - input: " + inputPath);
    LOG.info(" - output: " + outputPath);

    Configuration conf = new Configuration();
    conf.setInt("mapred.min.split.size", 1024 * 1024 * 1024);

    Job job = Job.getInstance(conf);
    job.setJobName(DumpPageRankRecordsToPlainText.class.getSimpleName());
    job.setJarByClass(DumpPageRankRecordsToPlainText.class);

    job.setNumReduceTasks(0);

    FileInputFormat.addInputPath(job, new Path(inputPath));
    FileOutputFormat.setOutputPath(job, new Path(outputPath));

    job.setInputFormatClass(SequenceFileInputFormat.class);
    job.setOutputFormatClass(TextOutputFormat.class);

    job.setMapOutputKeyClass(IntWritable.class);
    job.setMapOutputValueClass(PageRankNode.class);

    // Delete the output directory if it exists already.
    FileSystem.get(conf).delete(new Path(outputPath), true);

    job.waitForCompletion(true);

    return 0;
}

---

From source file:ComputeCooccurrenceMatrixPairs.java

License:Apache License

/**
 * Runs this tool.//from w  w  w.j  a v a  2  s  .  c o  m
 */
@SuppressWarnings({ "static-access" })
public int run(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));
    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("output path").create(OUTPUT));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("window size").create(WINDOW));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("number of reducers")
            .create(NUM_REDUCERS));

    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        return -1;
    }

    if (!cmdline.hasOption(INPUT) || !cmdline.hasOption(OUTPUT)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(this.getClass().getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        return -1;
    }

    String inputPath = cmdline.getOptionValue(INPUT);
    String outputPath = cmdline.getOptionValue(OUTPUT);
    int reduceTasks = cmdline.hasOption(NUM_REDUCERS) ? Integer.parseInt(cmdline.getOptionValue(NUM_REDUCERS))
            : 1;
    int window = cmdline.hasOption(WINDOW) ? Integer.parseInt(cmdline.getOptionValue(WINDOW)) : 2;

    LOG.info("Tool: " + ComputeCooccurrenceMatrixPairs.class.getSimpleName());
    LOG.info(" - input path: " + inputPath);
    LOG.info(" - output path: " + outputPath);
    LOG.info(" - window: " + window);
    LOG.info(" - number of reducers: " + reduceTasks);

    Job job = Job.getInstance(getConf());
    job.setJobName(ComputeCooccurrenceMatrixPairs.class.getSimpleName());
    job.setJarByClass(ComputeCooccurrenceMatrixPairs.class);

    // Delete the output directory if it exists already.
    Path outputDir = new Path(outputPath);
    FileSystem.get(getConf()).delete(outputDir, true);

    job.getConfiguration().setInt("window", window);

    job.setNumReduceTasks(reduceTasks);

    FileInputFormat.setInputPaths(job, new Path(inputPath));
    FileOutputFormat.setOutputPath(job, new Path(outputPath));

    job.setMapOutputKeyClass(PairOfStrings.class);
    job.setMapOutputValueClass(IntWritable.class);
    job.setOutputKeyClass(PairOfStrings.class);
    job.setOutputValueClass(IntWritable.class);

    job.setMapperClass(MyMapper.class);
    job.setCombinerClass(MyReducer.class);
    job.setReducerClass(MyReducer.class);
    job.setPartitionerClass(MyPartitioner.class);

    long startTime = System.currentTimeMillis();
    job.waitForCompletion(true);
    System.out.println("Job Finished in " + (System.currentTimeMillis() - startTime) / 1000.0 + " seconds");

    return 0;
}

---

From source file:ExtractTopPersonalizedPageRankNodes.java

License:Apache License

/**
 * Runs this tool.// ww w  .ja va 2  s  .  c  om
 */
@SuppressWarnings({ "static-access" })
public int run(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));
    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("output path").create(OUTPUT));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("top n").create(TOP));
    options.addOption(OptionBuilder.withArgName("src").hasArg().withDescription("source node").create(SRC));

    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        return -1;
    }

    if (!cmdline.hasOption(INPUT) || !cmdline.hasOption(TOP)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(this.getClass().getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        return -1;
    }

    String inputPath = cmdline.getOptionValue(INPUT);
    String outputPath = "abc";//cmdline.getOptionValue(OUTPUT);
    int n = Integer.parseInt(cmdline.getOptionValue(TOP));

    //LOG.info("Tool name: " + ExtractTopPersonalizedPageRankNodes.class.getSimpleName());
    //LOG.info(" - input: " + inputPath);
    //LOG.info(" - output: " + outputPath);
    //LOG.info(" - top: " + n);

    Configuration conf = getConf();
    conf.setInt("mapred.min.split.size", 1024 * 1024 * 1024);
    conf.setInt(TOP_PG, n);

    Job job = Job.getInstance(conf);
    job.setJobName(ExtractTopPersonalizedPageRankNodes.class.getName() + ":" + inputPath);
    job.setJarByClass(ExtractTopPersonalizedPageRankNodes.class);

    job.setNumReduceTasks(1);

    FileInputFormat.addInputPath(job, new Path(inputPath));
    FileOutputFormat.setOutputPath(job, new Path(outputPath));

    job.setInputFormatClass(SequenceFileInputFormat.class);
    job.setOutputFormatClass(TextOutputFormat.class);

    job.setMapOutputKeyClass(PairOfIntFloat.class);
    job.setMapOutputValueClass(IntWritable.class);

    job.setOutputKeyClass(FloatWritable.class);
    job.setOutputValueClass(IntWritable.class);

    job.setMapperClass(MyMapper.class);
    job.setPartitionerClass(MyPartitioner.class);
    job.setReducerClass(MyReducer.class);

    // Delete the output directory if it exists already.
    FileSystem.get(conf).delete(new Path(outputPath), true);

    job.waitForCompletion(true);

    FileSystem fileSystem = FileSystem.get(conf);
    Path path = new Path(outputPath + "/part-r-00000");
    ;
    //MapFile.Reader reader = new MapFile.Reader(new Path(outputPath+ "/part-r-00000"),conf);

    // InputStream fis=new FileInputStream(outputPath+"/part-r-00000");
    BufferedReader br = new BufferedReader(new InputStreamReader(fileSystem.open(path)));
    String s;
    float key;//=new FloatWritable();
    int value;//=new IntWritable();
    while ((s = br.readLine()) != null) {
        String[] sources = s.split("\\s+");
        key = Float.parseFloat(sources[0]);
        value = Integer.parseInt(sources[1]);
        if (key == 0.0f) {
            System.out.print("\n" + "Source: " + value + "\n");
        } else {
            System.out.print(String.format("%.5f %d", key, value) + "\n");
        }
    }
    //reader.close();
    br.close();

    //while(!SysOut.isEmpty())
    //{
    //   System.out.print(SysOut.poll());
    //}

    return 0;
}

---

From source file:BigramRelativeFrequencyJson.java

License:Apache License

/**
 * Runs this tool.//from w  ww .  j  a  va  2s  . c o m
 */
public int run(String[] args) throws Exception {
    if (args.length != 3) {
        printUsage();
        return -1;
    }

    String inputPath = args[0];
    String outputPath = args[1];
    int reduceTasks = Integer.parseInt(args[2]);

    LOG.info("Tool name: " + BigramRelativeFrequencyJson.class.getSimpleName());
    LOG.info(" - input path: " + inputPath);
    LOG.info(" - output path: " + outputPath);
    LOG.info(" - num reducers: " + reduceTasks);

    Job job = Job.getInstance(getConf());
    job.setJobName(BigramRelativeFrequencyJson.class.getSimpleName());
    job.setJarByClass(BigramRelativeFrequencyJson.class);

    job.setNumReduceTasks(reduceTasks);

    FileInputFormat.setInputPaths(job, new Path(inputPath));
    FileOutputFormat.setOutputPath(job, new Path(outputPath));

    job.setMapOutputKeyClass(MyTuple.class);
    job.setMapOutputValueClass(FloatWritable.class);
    job.setOutputKeyClass(MyTuple.class);
    job.setOutputValueClass(FloatWritable.class);
    job.setOutputFormatClass(SequenceFileOutputFormat.class);

    job.setMapperClass(MyMapper.class);
    job.setCombinerClass(MyCombiner.class);
    job.setReducerClass(MyReducer.class);
    job.setPartitionerClass(MyPartitioner.class);

    // Delete the output directory if it exists already.
    Path outputDir = new Path(outputPath);
    FileSystem.get(getConf()).delete(outputDir, true);

    long startTime = System.currentTimeMillis();
    job.waitForCompletion(true);
    System.out.println("Job Finished in " + (System.currentTimeMillis() - startTime) / 1000.0 + " seconds");

    return 0;
}

---

From source file:PairsPMI_M.java

License:Apache License

/**
 * Runs this tool.// w  w  w  .ja v  a 2s .c om
 */
@SuppressWarnings({ "static-access" })
public int run(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));
    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("output path").create(OUTPUT));
    options.addOption(OptionBuilder.withArgName("num").hasArg().withDescription("number of reducers")
            .create(NUM_REDUCERS));

    CommandLine cmdline;
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        return -1;
    }

    if (!cmdline.hasOption(INPUT) || !cmdline.hasOption(OUTPUT)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(this.getClass().getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        return -1;
    }

    // First MapReduce Job

    String inputPath = cmdline.getOptionValue(INPUT);
    String outputPath = cmdline.getOptionValue(OUTPUT);
    int reduceTasks = cmdline.hasOption(NUM_REDUCERS) ? Integer.parseInt(cmdline.getOptionValue(NUM_REDUCERS))
            : 1;

    LOG.info("Tool name: " + PairsPMI_M.class.getSimpleName());
    LOG.info(" - input path: " + inputPath);
    LOG.info(" - output path: " + outputPath);
    LOG.info(" - tmp path: " + outputPath + "/tmp");
    LOG.info(" - num reducers: " + reduceTasks);

    Job job = Job.getInstance(getConf());
    job.setJobName(PairsPMI_M.class.getSimpleName());
    job.setJarByClass(PairsPMI_M.class);

    // Delete the tmp directory if it exists already
    Path tmpDir = new Path("tmp_wj");
    FileSystem.get(getConf()).delete(tmpDir, true);

    job.setNumReduceTasks(reduceTasks);

    FileInputFormat.setInputPaths(job, new Path(inputPath));
    FileOutputFormat.setOutputPath(job, new Path("tmp_wj"));

    job.setMapOutputKeyClass(PairOfStrings.class);
    job.setMapOutputValueClass(FloatWritable.class);
    job.setOutputKeyClass(PairOfStrings.class);
    job.setOutputValueClass(FloatWritable.class);

    job.setOutputFormatClass(SequenceFileOutputFormat.class);
    //    job.setOutputFormatClass(TextOutputFormat.class);

    job.setMapperClass(MyMapper.class);
    job.setCombinerClass(MyCombiner.class);
    job.setReducerClass(MyReducer.class);
    job.setPartitionerClass(MyPartitioner.class);

    long startTime = System.currentTimeMillis();
    job.waitForCompletion(true);
    double time1 = (System.currentTimeMillis() - startTime) / 1000.0;
    System.out.println("Job Finished in " + time1 + " seconds");
    numRecords = job.getCounters().findCounter("org.apache.hadoop.mapred.Task$Counter", "MAP_INPUT_RECORDS")
            .getValue();

    /*
     *  Second MapReduce Job
     */

    LOG.info("Tool name: " + PairsPMI_M.class.getSimpleName());
    LOG.info("second stage of MapReduce");
    LOG.info(" - input from tmp path: " + outputPath + "/tmp_wj");
    LOG.info(" - output path: " + outputPath);
    LOG.info(" - num reducers: " + reduceTasks);

    // set the global variable
    Configuration conf = getConf();
    conf.setLong("numRec", numRecords);

    job = Job.getInstance(getConf());
    job.setJobName(PairsPMI_M.class.getSimpleName());
    job.setJarByClass(PairsPMI_M.class);

    // Delete the output directory if it exists already
    Path outputDir = new Path(outputPath);
    FileSystem.get(getConf()).delete(outputDir, true);

    job.setNumReduceTasks(reduceTasks);
    FileInputFormat.setInputPaths(job, new Path("tmp_wj/part*"));
    FileOutputFormat.setOutputPath(job, new Path(outputPath));

    job.setMapOutputKeyClass(PairOfStrings.class);
    job.setMapOutputValueClass(FloatWritable.class);
    // job.setOutputKeyClass(PairOfStrings.class);
    job.setOutputKeyClass(Text.class);

    job.setOutputValueClass(FloatWritable.class);
    job.setInputFormatClass(SequenceFileInputFormat.class);
    //   job.setOutputFormatClass(SequenceFileOutputFormat.class);
    job.setOutputFormatClass(TextOutputFormat.class);

    job.setMapperClass(MyMapperSecond.class);
    //    job.setCombinerClass(MyCombiner.class);
    job.setReducerClass(MyReducerSecond.class);
    job.setPartitionerClass(MyPartitioner.class);

    startTime = System.currentTimeMillis();
    job.waitForCompletion(true);
    double time2 = (System.currentTimeMillis() - startTime) / 1000.0;
    System.out.println("Second job finished in " + time2 + " seconds");
    System.out.println("Total time: " + (time1 + time2) + " seconds");

    return 0;
}

---

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