Example usage for org.apache.commons.lang3 StringUtils substringAfter

Introduction

In this page you can find the example usage for org.apache.commons.lang3 StringUtils substringAfter.

Prototype

public static String substringAfter(final String str, final String separator) 

Source Link

Document

Gets the substring after the first occurrence of a separator.

Usage

From source file:org.phenotips.vocabulary.internal.solr.MendelianInheritanceInMan.java

@Override
public VocabularyTerm getTerm(String id) {
    VocabularyTerm result = super.getTerm(id);
    if (result == null) {
        String optionalPrefix = STANDARD_NAME + ":";
        if (StringUtils.startsWith(id, optionalPrefix)) {
            result = getTerm(StringUtils.substringAfter(id, optionalPrefix));
        }/*  ww w.jav  a 2s. co  m*/
    }
    return result;
}

---

From source file:org.phenotips.vocabulary.internal.solr.MendelianInheritanceInMan.java

private void parseOmimData(URL sourceUrl) {
    try {/*from  ww  w . jav  a2 s  .  c  o  m*/
        Reader in = new InputStreamReader(sourceUrl.openConnection().getInputStream(),
                Charset.forName(ENCODING));
        for (CSVRecord row : CSVFormat.TDF.withCommentMarker('#').parse(in)) {
            // Ignore moved or removed entries
            if ("Caret".equals(row.get(0))) {
                continue;
            }

            SolrInputDocument crtTerm = new SolrInputDocument();
            // set id
            addFieldValue(ID_FIELD, row.get(1), crtTerm);

            // set symbol
            addFieldValue(SYMBOL_FIELD, SYMBOLS.get(row.get(0)), crtTerm);
            // set type (multivalued)
            for (String type : TYPES.get(row.get(0))) {
                addFieldValue(TYPE_FIELD, type, crtTerm);
            }
            // set name
            String name = StringUtils.substringBefore(row.get(2), TITLE_SEPARATOR).trim();
            addFieldValue(NAME_FIELD, name, crtTerm);
            // set short name
            String shortNameString = StringUtils.substringAfter(row.get(2), TITLE_SEPARATOR).trim();
            String[] shortNames = StringUtils.split(shortNameString, TITLE_SEPARATOR);
            for (String shortName : shortNames) {
                addFieldValue(SHORT_NAME_FIELD, shortName.trim(), crtTerm);
            }

            // set synonyms
            setListFieldValue(SYNONYM_FIELD, row.get(3), crtTerm);
            // set included name
            setListFieldValue(INCLUDED_NAME_FIELD, row.get(4), crtTerm);

            this.data.put(String.valueOf(crtTerm.get(ID_FIELD).getFirstValue()), crtTerm);
        }
    } catch (IOException ex) {
        this.logger.warn("Failed to read/parse the OMIM source: {}", ex.getMessage());
    }
}

---

From source file:org.phenotips.vocabulary.internal.solr.OmimSourceParser.java

private void loadField(String name, String value) {
    if (StringUtils.isAnyBlank(name, value)) {
        return;/*from   w w  w .  j  a v a 2 s .  co m*/
    }
    switch (name) {
    case FIELD_MIM_NUMBER:
        this.crtTerm.setField(ID_FIELD, value);
        break;
    case FIELD_TITLE:
        String title = StringUtils.substringBefore(value, TITLE_SEPARATOR).trim();
        String[] synonyms = StringUtils.split(StringUtils.substringAfter(value, TITLE_SEPARATOR),
                TITLE_SEPARATOR);
        this.crtTerm.setField(NAME_FIELD, title);
        for (String synonym : synonyms) {
            this.crtTerm.addField(SYNONYM_FIELD, synonym.trim());
        }
        break;
    case FIELD_TEXT:
        this.crtTerm.addField("def", value);
        break;
    default:
        return;
    }
}

---

From source file:org.phenotips.vocabulary.internal.solr.OrphanetRareDiseaseOntology.java

/**
 * Extracts property hasDbXref from an {@link RDFNode} and adds it to the {@link SolrInputDocument}.
 *
 * @param doc the Solr input document for an {@link OntClass} of interest
 * @param object the {@link RDFNode} object contained within the {@link OntClass} of interest
 *//*from  w  w w .  j a  v  a 2 s  . c  o m*/
private void extractDbxRef(@Nonnull final SolrInputDocument doc, @Nonnull final RDFNode object) {
    // If the node is not a literal, will throw a {@link LiteralRequiredException}. For ORDO, this is always a
    // literal.
    if (object.isLiteral()) {
        final String externalRef = object.asLiteral().getLexicalForm();
        final String ontology = StringUtils.substringBefore(externalRef, SEPARATOR);
        final String externalId = StringUtils.substringAfter(externalRef, SEPARATOR);
        addMultivaluedField(doc, ontology.toLowerCase() + "_id", externalId);
    }
}

---

From source file:org.polymap.rhei.fulltext.BoundsFilterQueryDecorator.java

@Override
public Iterable<JSONObject> search(String query, int maxResults) throws Exception {
    String boundsJson = null;/*from   w  w w  . j a v  a2  s  .  c  o m*/
    String searchQuery = query;

    // extract bounds:{...} param from query
    Matcher matcher = boundsPattern.matcher(query);
    if (matcher.find()) {
        String boundsParam = query.substring(matcher.start(), matcher.end());
        boundsJson = StringUtils.substringAfter(boundsParam, "bounds:");
        searchQuery = StringUtils.remove(searchQuery, boundsParam);
    }

    // next
    Iterable<JSONObject> results = next.search(searchQuery, maxResults);

    // filter bounds
    if (boundsJson != null) {
        final Geometry bounds = jsonDecoder.read(new StringReader(boundsJson));

        return Iterables.filter(results, new Predicate<JSONObject>() {
            public boolean apply(JSONObject feature) {
                try {
                    Geometry geom = (Geometry) feature.opt(FIELD_GEOM);
                    return geom != null ? bounds.contains(geom) : true;
                } catch (Exception e) {
                    throw new RuntimeException(e);
                }
            }
        });
    } else {
        return results;
    }
}

---

From source file:org.rippleosi.common.util.DateFormatter.java

public static String combineDateTime(Date date, Date time) {

    String dateAsString = toString(date);
    String timeAsString = toString(time);

    if (dateAsString == null || timeAsString == null) {
        return null;
    }/*from w ww .j  a v a  2  s  . c om*/

    return StringUtils.substringBefore(dateAsString, "T") + "T" + StringUtils.substringAfter(timeAsString, "T");
}

---

From source file:org.simplesite.commons.utils.excel.ImportExcel.java

/**
 * ??/*from  ww  w. ja  v  a  2  s  . c  o  m*/
 * @param cls 
 * @param groups 
 */
public <E> List<E> getDataList(Class<E> cls, int... groups)
        throws InstantiationException, IllegalAccessException {
    List<Object[]> annotationList = Lists.newArrayList();
    // Get annotation field
    Field[] fs = cls.getDeclaredFields();
    for (Field f : fs) {
        ExcelField ef = f.getAnnotation(ExcelField.class);
        if (ef != null && (ef.type() == 0 || ef.type() == 2)) {
            if (groups != null && groups.length > 0) {
                boolean inGroup = false;
                for (int g : groups) {
                    if (inGroup) {
                        break;
                    }
                    for (int efg : ef.groups()) {
                        if (g == efg) {
                            inGroup = true;
                            annotationList.add(new Object[] { ef, f });
                            break;
                        }
                    }
                }
            } else {
                annotationList.add(new Object[] { ef, f });
            }
        }
    }
    // Get annotation method
    Method[] ms = cls.getDeclaredMethods();
    for (Method m : ms) {
        ExcelField ef = m.getAnnotation(ExcelField.class);
        if (ef != null && (ef.type() == 0 || ef.type() == 2)) {
            if (groups != null && groups.length > 0) {
                boolean inGroup = false;
                for (int g : groups) {
                    if (inGroup) {
                        break;
                    }
                    for (int efg : ef.groups()) {
                        if (g == efg) {
                            inGroup = true;
                            annotationList.add(new Object[] { ef, m });
                            break;
                        }
                    }
                }
            } else {
                annotationList.add(new Object[] { ef, m });
            }
        }
    }
    // Field sorting
    Collections.sort(annotationList, new Comparator<Object[]>() {
        public int compare(Object[] o1, Object[] o2) {
            return new Integer(((ExcelField) o1[0]).sort()).compareTo(new Integer(((ExcelField) o2[0]).sort()));
        };
    });
    //log.debug("Import column count:"+annotationList.size());
    // Get excel data
    List<E> dataList = Lists.newArrayList();
    for (int i = this.getDataRowNum(); i < this.getLastDataRowNum(); i++) {
        E e = (E) cls.newInstance();
        int column = 0;
        Row row = this.getRow(i);
        StringBuilder sb = new StringBuilder();
        for (Object[] os : annotationList) {
            Object val = this.getCellValue(row, column++);
            if (val != null) {
                ExcelField ef = (ExcelField) os[0];
                // If is dict type, get dict value
                if (StringUtils.isNotBlank(ef.dictType())) {
                    //val = DictUtils.getDictValue(val.toString(), ef.dictType(), "");
                    val = val == null ? "" : val.toString();
                    //log.debug("Dictionary type value: ["+i+","+colunm+"] " + val);
                }
                // Get param type and type cast
                Class<?> valType = Class.class;
                if (os[1] instanceof Field) {
                    valType = ((Field) os[1]).getType();
                } else if (os[1] instanceof Method) {
                    Method method = ((Method) os[1]);
                    if ("get".equals(method.getName().substring(0, 3))) {
                        valType = method.getReturnType();
                    } else if ("set".equals(method.getName().substring(0, 3))) {
                        valType = ((Method) os[1]).getParameterTypes()[0];
                    }
                }
                //log.debug("Import value type: ["+i+","+column+"] " + valType);
                try {
                    if (valType == String.class) {
                        val = String.valueOf(val.toString());
                    } else if (valType == Integer.class) {
                        val = Double.valueOf(val.toString()).intValue();
                    } else if (valType == Long.class) {
                        val = Double.valueOf(val.toString()).longValue();
                    } else if (valType == Double.class) {
                        val = Double.valueOf(val.toString());
                    } else if (valType == Float.class) {
                        val = Float.valueOf(val.toString());
                    } else if (valType == Date.class) {
                        val = DateUtil.getJavaDate((Double) val);
                    } else {
                        if (ef.fieldType() != Class.class) {
                            val = ef.fieldType().getMethod("getValue", String.class).invoke(null,
                                    val.toString());
                        } else {
                            val = Class
                                    .forName(this.getClass().getName().replaceAll(
                                            this.getClass().getSimpleName(),
                                            "fieldtype." + valType.getSimpleName() + "Type"))
                                    .getMethod("getValue", String.class).invoke(null, val.toString());
                        }
                    }
                } catch (Exception ex) {
                    log.info("Get cell value [" + i + "," + column + "] error: " + ex.toString());
                    val = null;
                }
                // set entity value
                if (os[1] instanceof Field) {
                    Reflections.invokeSetter(e, ((Field) os[1]).getName(), val);
                } else if (os[1] instanceof Method) {
                    String mthodName = ((Method) os[1]).getName();
                    if ("get".equals(mthodName.substring(0, 3))) {
                        mthodName = "set" + StringUtils.substringAfter(mthodName, "get");
                    }
                    Reflections.invokeMethod(e, mthodName, new Class[] { valType }, new Object[] { val });
                }
            }
            sb.append(val + ", ");
        }
        dataList.add(e);
        log.debug("Read success: [" + i + "] " + sb.toString());
    }
    return dataList;
}

---

From source file:org.sleuthkit.autopsy.timeline.ui.detailview.AggregateEventNode.java

/** @param descrVis the level of description that should be displayed */
final void setDescriptionVisibility(DescriptionVisibility descrVis) {
    this.descrVis = descrVis;
    final int size = event.getEventIDs().size();

    switch (descrVis) {

    case COUNT_ONLY:
        descrLabel.setText("");
        countLabel.setText(String.valueOf(size));
        break;//w ww  .ja v  a  2s  . c om
    case HIDDEN:
        countLabel.setText("");
        descrLabel.setText("");
        break;
    default:
    case SHOWN:
        String description = event.getDescription();
        description = parentEventNode != null
                ? "    ..."
                        + StringUtils.substringAfter(description, parentEventNode.getEvent().getDescription())
                : description;
        descrLabel.setText(description);
        countLabel.setText(((size == 1) ? "" : " (" + size + ")")); // NON-NLS
        break;
    }
}

---

From source file:org.sleuthkit.autopsy.timeline.ui.detailview.EventNodeBase.java

void showFullDescription(final int size) {
    countLabel.setText((size == 1) ? "" : " (" + size + ")"); // NON-NLS
    String description = getParentNode()
            .map(pNode -> "    ..."
                    + StringUtils.substringAfter(getEvent().getDescription(), parentNode.getDescription()))
            .orElseGet(getEvent()::getDescription);

    descrLabel.setText(description);// w  ww . j a  va 2 s .  c  o  m
}

---

From source file:org.sleuthkit.autopsy.timeline.ui.detailview.EventStripeNode.java

@Override
void setDescriptionVisibiltiyImpl(DescriptionVisibility descrVis) {
    final int size = getEventStripe().getEventIDs().size();

    switch (descrVis) {
    case HIDDEN://  w  w w . ja  v  a 2  s .c  o  m
        countLabel.setText("");
        descrLabel.setText("");
        break;
    case COUNT_ONLY:
        descrLabel.setText("");
        countLabel.setText(String.valueOf(size));
        break;
    default:
    case SHOWN:
        String description = getEventStripe().getDescription();
        description = parentNode != null
                ? "    ..." + StringUtils.substringAfter(description, parentNode.getDescription())
                : description;
        descrLabel.setText(description);
        countLabel.setText(((size == 1) ? "" : " (" + size + ")")); // NON-NLS
        break;
    }
}

---

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