Example usage for org.apache.commons.lang3 StringUtils split

List of usage examples for org.apache.commons.lang3 StringUtils split

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Introduction

In this page you can find the example usage for org.apache.commons.lang3 StringUtils split.

Prototype

public static String[] split(final String str, final String separatorChars)

Source Link

Document

Splits the provided text into an array, separators specified.

Usage

From source file:ca.on.oicr.pde.workflows.GATK3Workflow.java

@Override
public Map<String, SqwFile> setupFiles() {

    List<String> inputFilesList = Arrays.asList(StringUtils.split(getProperty("input_files"), ","));
    Set<String> inputFilesSet = new HashSet<>(inputFilesList);

    if (inputFilesList.size() != inputFilesSet.size()) {
        throw new RuntimeException("Duplicate files detected in input_files");
    }//from   w  ww .j  a va2 s.c  o  m

    if ((inputFilesSet.size() % 2) != 0) {
        throw new RuntimeException("Each bam should have a corresponding index");
    }

    Map<String, String> bams = new HashMap<>();
    Map<String, String> bais = new HashMap<>();
    for (String f : inputFilesSet) {
        String fileExtension = FilenameUtils.getExtension(f);
        String fileKey = FilenameUtils.removeExtension(f);
        if (null != fileExtension) {
            switch (fileExtension) {
            case "bam":
                bams.put(fileKey, f);
                break;
            case "bai":
                bais.put(fileKey, f);
                break;
            default:
                throw new RuntimeException("Unsupported input file type");
            }
        }
    }

    int id = 0;
    for (Entry<String, String> e : bams.entrySet()) {
        String key = e.getKey();
        String bamFilePath = e.getValue();

        String baiFilePath = bais.get(key);
        if (baiFilePath == null) {
            throw new RuntimeException("Missing index for " + FilenameUtils.getName(bamFilePath));
        }

        SqwFile bam = this.createFile("file_in_" + id++);
        bam.setSourcePath(bamFilePath);
        bam.setType("application/bam");
        bam.setIsInput(true);

        SqwFile bai = this.createFile("file_in_" + id++);
        bai.setSourcePath(baiFilePath);
        bai.setType("application/bam-index");
        bai.setIsInput(true);

        //FIXME: this seems to work for now, it would be better to be able to set the provisionedPath as
        //bai.getProvisionedPath != bai.getOutputPath ...
        //at least with seqware 1.1.0, setting output path changes where the output file will be stored,
        //but the commonly used get provisioned path will return the incorrect path to the file
        bai.setOutputPath(FilenameUtils.getPath(bam.getProvisionedPath()));

        inputBamFiles.add(bam.getProvisionedPath());
    }

    return this.getFiles();
}

From source file:com.textocat.textokit.eval.matching.MatchingConfigurationInitializer.java

public TypeBasedMatcherDispatcher<AnnotationFS> create() {
    String targetTypeNamesStr = propertyResolver
            .getProperty(ConfigurationKeys.KEY_MATCHING_CONFIGURATION_TARGET_TYPE);
    if (targetTypeNamesStr == null) {
        throw new IllegalStateException(
                String.format("Can't create matcher because there is no property under key %s",
                        ConfigurationKeys.KEY_MATCHING_CONFIGURATION_TARGET_TYPE));
    }/*from  ww  w  .  j  a v a  2 s.co m*/
    TypeBasedMatcherDispatcher.Builder<AnnotationFS> builder = TypeBasedMatcherDispatcher.builder(ts);
    List<String> targetTypeNames = Arrays.asList(StringUtils.split(targetTypeNamesStr, ",;"));
    for (String ttn : targetTypeNames) {
        Type targetType = FSTypeUtils.getType(ts, ttn, true);
        CompositeMatcher<AnnotationFS> m = createTargetMatcher(targetType);
        builder.addSubmatcher(targetType, m);
    }
    return builder.build();
}

From source file:name.martingeisse.stackd.common.geometry.SectionId.java

/**
 * Constructor.//from  w w w  . j a va 2 s.c o  m
 * @param identifierText the text returned by {@link #getIdentifierText()}.
 * @throws IllegalArgumentException if the identifier text is malformed
 */
public SectionId(String identifierText) throws IllegalArgumentException {
    final String[] idTextSegments = StringUtils.split(identifierText, '_');
    if (idTextSegments.length != 3) {
        throw new IllegalArgumentException(identifierText);
    }
    try {
        x = Integer.parseInt(idTextSegments[0]);
        y = Integer.parseInt(idTextSegments[1]);
        z = Integer.parseInt(idTextSegments[2]);
    } catch (final NumberFormatException e) {
        throw new IllegalArgumentException(identifierText);
    }
}

From source file:com.nesscomputing.config.ConfigFactory.java

CombinedConfiguration load() {
    // Allow foo/bar/baz and foo:bar:baz
    final String[] configNames = StringUtils.stripAll(StringUtils.split(configName, "/:"));

    final CombinedConfiguration cc = new CombinedConfiguration(new OverrideCombiner());

    // All properties can be overridden by the System properties.
    cc.addConfiguration(new SystemConfiguration(), "systemProperties");

    boolean loadedConfig = false;
    for (int i = 0; i < configNames.length; i++) {
        final String configFileName = configNames[configNames.length - i - 1];
        final String configFilePath = StringUtils.join(configNames, "/", 0, configNames.length - i);

        try {//from   w w w.  j  a  v  a2  s.co  m
            final AbstractConfiguration subConfig = configStrategy.load(configFileName, configFilePath);
            if (subConfig == null) {
                LOG.debug("Configuration '%s' does not exist, skipping", configFileName);
            } else {
                cc.addConfiguration(subConfig, configFileName);
                loadedConfig = true;
            }
        } catch (ConfigurationException ce) {
            LOG.error(String.format("While loading configuration '%s'", configFileName), ce);
        }
    }

    if (!loadedConfig && configNames.length > 0) {
        LOG.warn("Config name '%s' was given but no config file could be found, this looks fishy!", configName);
    }

    return cc;
}

From source file:net.ontopia.topicmaps.nav2.plugins.PluginContentHandler.java

@Override
public void startElement(String nsuri, String lname, String qname, Attributes attrs) throws SAXException {
    super.startElement(nsuri, lname, qname, attrs);

    if ("plugin".equals(qname)) {
        String klass = attrs.getValue("class");
        if (klass == null)
            cplugin = new DefaultPlugin();
        else// w  w w.java2s  .co m
            cplugin = createPlugin(klass);

        if (cplugin == null)
            return; // createPlugin may fail...

        cplugin.setId(attrs.getValue("id"));
        String str_groups = attrs.getValue("groups");
        // split group containing string into elements
        if (str_groups != null && !str_groups.equals("")) {
            String[] grpArray = StringUtils.split(str_groups, ",");
            List groups = new ArrayList(grpArray.length);
            for (int i = 0; i < grpArray.length; i++)
                groups.add(grpArray[i].trim());
            cplugin.setGroups(groups);
        }

    } else if ("parameter".equals(qname)) {
        param_name = attrs.getValue("name");
        if (attrs.getValue("value") != null)
            cplugin.setParameter(attrs.getValue("name"), attrs.getValue("value"));
    }
}

From source file:io.wcm.handler.url.impl.UrlHandlerImpl.java

@Override
public String rewritePathToContext(final String path, final String contextPath) {
    if (StringUtils.isEmpty(path) || StringUtils.isEmpty(contextPath)) {
        return path;
    }/*  w w w .  j  a  va2s  .  co  m*/

    // split up paths
    String[] contextPathParts = StringUtils.split(contextPath, "/");
    String[] pathParts = StringUtils.split(path, "/");

    // check if both paths are valid - return unchanged path if not
    int siteRootLevelContextPath = urlHandlerConfig.getSiteRootLevel(contextPath);
    int siteRootLevelPath = urlHandlerConfig.getSiteRootLevel(path);
    if ((contextPathParts.length <= siteRootLevelContextPath) || (pathParts.length <= siteRootLevelPath)
            || !StringUtils.equals(contextPathParts[0], "content")
            || !StringUtils.equals(pathParts[0], "content")) {
        return path;
    }

    // rewrite path to current context
    StringBuilder rewrittenPath = new StringBuilder();
    for (int i = 0; i <= siteRootLevelContextPath; i++) {
        rewrittenPath.append('/').append(contextPathParts[i]);
    }
    for (int i = siteRootLevelPath + 1; i < pathParts.length; i++) {
        rewrittenPath.append('/').append(pathParts[i]);
    }
    return rewrittenPath.toString();
}

From source file:edu.rosehulman.sws.protocol.AbstractHttpRequest.java

/**
 * /*from  w  ww .j a  v a  2  s .  c om*/
 * checks given set of credentials
 * against requests credentials
 * 
 * @param username
 * @param password
 * @return isAuthorized
 */
public boolean isAuthorizedFor(String username, String password) {
    String credentials = this.header.get(Protocol.AUTHORIZATION);
    if (credentials == null) {
        return false;
    } else {
        String[] credentialParts = StringUtils.split(credentials, Protocol.AUTHORIZATION_SEPERATOR);
        String requestUsername = credentialParts[0];
        String requestPassword = credentialParts[1];
        return username.equals(requestUsername) && password.equals(requestPassword);
    }
}

From source file:de.mirkosertic.desktopsearch.SearchServlet.java

private void fillinSearchResult(HttpServletRequest aRequest, HttpServletResponse aResponse)
        throws ServletException, IOException {

    URLCodec theURLCodec = new URLCodec();

    String theQueryString = aRequest.getParameter("querystring");
    String theBasePath = basePath;
    String theBackLink = basePath;
    if (!StringUtils.isEmpty(theQueryString)) {
        try {/* w w  w .  j  ava2 s .  c o m*/
            theBasePath = theBasePath + "/" + theURLCodec.encode(theQueryString);
            theBackLink = theBackLink + "/" + theURLCodec.encode(theQueryString);
        } catch (EncoderException e) {
            LOGGER.error("Error encoding query string " + theQueryString, e);
        }
    }
    Map<String, String> theDrilldownDimensions = new HashMap<>();

    String thePathInfo = aRequest.getPathInfo();
    if (!StringUtils.isEmpty(thePathInfo)) {
        String theWorkingPathInfo = thePathInfo;

        // First component is the query string
        if (theWorkingPathInfo.startsWith("/")) {
            theWorkingPathInfo = theWorkingPathInfo.substring(1);
        }
        String[] thePaths = StringUtils.split(theWorkingPathInfo, "/");
        for (int i = 0; i < thePaths.length; i++) {
            try {
                String theDecodedValue = thePaths[i].replace('+', ' ');
                String theEncodedValue = theURLCodec.encode(theDecodedValue);
                theBasePath = theBasePath + "/" + theEncodedValue;
                if (i < thePaths.length - 1) {
                    theBackLink = theBackLink + "/" + theEncodedValue;
                }
                if (i == 0) {
                    theQueryString = theDecodedValue;
                } else {
                    FacetSearchUtils.addToMap(theDecodedValue, theDrilldownDimensions);
                }
            } catch (EncoderException e) {
                LOGGER.error("Error while decoding drilldown params for " + aRequest.getPathInfo(), e);
            }
        }
        if (basePath.equals(theBackLink)) {
            theBackLink = null;
        }
    } else {
        theBackLink = null;
    }

    if (!StringUtils.isEmpty(theQueryString)) {
        aRequest.setAttribute("querystring", theQueryString);
        try {
            aRequest.setAttribute("queryResult",
                    backend.performQuery(theQueryString, theBackLink, theBasePath, theDrilldownDimensions));
        } catch (Exception e) {
            LOGGER.error("Error running query " + theQueryString, e);
        }
    } else {
        aRequest.setAttribute("querystring", "");
    }

    aRequest.setAttribute("serverBase", serverBase);

    aRequest.getRequestDispatcher("/index.ftl").forward(aRequest, aResponse);
}

From source file:com.jdy.ddj.common.orm.PageRequest.java

/**
 * ???./*w ww.java2s. c o m*/
 *
 * @param orderDir ?descasc,?','.
 */
public void setOrderDir(final String orderDir) {
    if (orderDir == null) {
        return;
    }
    String lowcaseOrderDir = StringUtils.lowerCase(orderDir);

    //order?
    String[] orderDirs = StringUtils.split(lowcaseOrderDir, ',');
    for (String orderDirStr : orderDirs) {
        if (!StringUtils.equals(Sort.DESC, orderDirStr) && !StringUtils.equals(Sort.ASC, orderDirStr)) {
            throw new IllegalArgumentException("??" + orderDirStr + "??");
        }
    }

    this.orderDir = lowcaseOrderDir;
}

From source file:de.adorsys.multibanking.hbci.job.LoadBalanceJob.java

private static boolean initFailed(HBCIExecStatus status) {
    return Stream.of(StringUtils.split(status.getErrorString(), System.getProperty("line.separator")))
            .anyMatch(line -> line.charAt(0) == '9');
}